Array 1 925-158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBAI010000008.1 Klebsiella pneumoniae strain DGL6 NODE_8_length_307852_cov_32.705960, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 924 28 100.0 33 ............................ TATCATCCCTATCGCGCAGCACTTCGACGGCGA 863 28 100.0 33 ............................ TACCGCCGCGATACTGGCAGTTTTCAGCTGAAT 802 28 100.0 33 ............................ CAGCGGCGGCGGTAACGCCGCCAGGAGCAACCT 741 28 100.0 33 ............................ CACCGATCTGCGCCAGCTGGGTGAGACGATGAC 680 28 100.0 33 ............................ TACACTCAAGAAAACAAAATCTCAGGTTGATAC 619 28 96.4 33 ......................G..... TGGAAGGCGCGATTTGGAGATAGAGCAGCATGA 558 28 100.0 33 ............................ CTCGCACAGCATCGCCCGGATCCGCTTCCACGC 497 28 100.0 33 ............................ CACCCGCGTTTTCGAAAGGGATGGCGGCTATGT 436 28 100.0 33 ............................ CGACGGGGCAGGTTTACGTCTACCCGGGCAGGG 375 28 96.4 33 .G.......................... CATACCAGTCTCCGCCGCGGTCGTACTCAATAT 314 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 253 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 184 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ========================================= ================== 13 28 98.3 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGGGAAGGTGCGAATAAGCAGGTCATTTCTTCCCAAGCTGACTCGCTGATTAAAATTTCGCGGATCTGGGCCGATTTTTTTCCCGCAAACACATCGAATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10256-9678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBAI010000008.1 Klebsiella pneumoniae strain DGL6 NODE_8_length_307852_cov_32.705960, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10255 28 100.0 33 ............................ TGCCTCCAATGCAATCACCGGCCTGCTAACCGG 10194 28 100.0 33 ............................ CGTGTCGAAGCGCACCTCGTAGCCGAGCCAGTC 10133 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 10072 28 100.0 33 ............................ TCCAGTCGTCGTAGTCCTCGGTAATGTCCTCGA 10011 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 9950 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 9889 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 9828 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [9823] 9766 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 9705 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5930-6689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBAI010000045.1 Klebsiella pneumoniae strain DGL6 NODE_45_length_7111_cov_64.845506, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5930 29 93.1 32 ............TG............... AGCAACGTTTCCGGATTATATGGCTGGAACGT 5991 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6052 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6113 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 6174 29 96.6 32 ............................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 6235 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 6296 29 96.6 32 .........................A... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6357 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6418 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 6479 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 6540 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 6601 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 6662 28 93.1 0 ......................-.....A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.0 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //