Array 1 26-457 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAR01000051.1 Helicobacter sp. 13S00401-1 NODE_248_length_482_cov_47.3606_ID_495, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 .................................... TTGTTTCCTTCTAAAGTTAGTATCTTTACA 92 36 100.0 30 .................................... CTATTGCCTTCATAAAAGCACGGGTATGTG 158 36 100.0 30 .................................... TAGTTGATAGGGCTAGGATAGTTAAAGACT 224 36 100.0 30 .................................... TAGTTGATAGGGCTAGGATAGTTAAAGACT 290 36 100.0 30 .................................... CAAAAAAAAATAAAAATCCACTAAAAAAAG 356 36 100.0 30 .................................... TCTATAACTTCTAGACTAAAGTTTTCTACT 422 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 ATTATAACATGTAGGATTTTAGGGGACTCTTATAAC # Left flank : AAGTGTATGTTTTATAGCTTGCCTCA # Right flank : CATTCAAAAAGCACAGTTGACTTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATGTAGGATTTTAGGGGACTCTTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1-631 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAR01000046.1 Helicobacter sp. 13S00401-1 NODE_131_length_631_cov_123.472_ID_261, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1 36 100.0 30 .................................... AAAAAGACATCGCCGTACTTGGTAATTTCT 67 36 100.0 31 .................................... TTAGTGGTTTGTTGTTTTGGGGAGCTTTTGG 134 36 100.0 30 .................................... ATAGGCGCTTAGTTGCTAATAATGTCTTAC 200 36 100.0 30 .................................... TAAAATATGTCTAAACCTATACTTTCAATA 266 36 100.0 30 .................................... CTTGCTACCCAAATGAAGTAGTGGTTTTTG 332 36 100.0 30 .................................... TGTGCCTAGCCTTTAATCTTTCGCTTTAAA 398 36 100.0 30 .................................... CTCGTAGTCATACTCTCTTAGGCCTATAGA 464 36 100.0 30 .................................... AGTCTATAAGTCAACTGTGCTTTTTGAATG 530 36 100.0 30 .................................... AGTAGAAAACTTTAGTCTAGAAGTTATAGA 596 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTATAAGAGTCCCCTAAAATCCTACATGTTATAAT # Left flank : | # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAAGAGTCCCCTAAAATCCTACATGTTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 26-193 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAR01000058.1 Helicobacter sp. 13S00401-1 NODE_708_length_217_cov_54.4889_ID_1415, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 .................................... AGAAATTACCAAGTACGGCGATGTCTTTTT 92 36 100.0 30 .................................... CCTATATTCCTTGCCTGATGATGAGGTAGG 158 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 ATTATAACATGTAGGATTTTAGGGGACTCTTATAAC # Left flank : GCTCCCCAAAACAACAAACCACTAAA # Right flank : CAGAAAAAATCATAAAAGATTATC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATGTAGGATTTTAGGGGACTCTTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 8351-11359 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAR01000005.1 Helicobacter sp. 13S00401-1 NODE_5_length_134624_cov_77.0427_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 8351 36 100.0 30 .................................... ATTTAAGTACTCTAAAAACTACTAGTATAA 8417 36 100.0 30 .................................... GCGTTTGAGTGGTGCGGCAAATCCTTTGGA 8483 36 100.0 30 .................................... CTTACTAGCTATATCAAATCCAAAAATTGA 8549 36 100.0 30 .................................... AAAACAATCTAATAACGGAATTATTGCAAT 8615 36 100.0 30 .................................... AAAAAATATAGCTGAGTTTGCAAAAATTGA 8681 36 100.0 30 .................................... TAGCTGATATTTCAGTTAACGGCAATGATT 8747 36 100.0 30 .................................... TGTTTTTATTTGCGTCTTTGCTGAAACGCG 8813 36 100.0 30 .................................... CTCTAATAAGCTTAGCCCTACTTTAATAGA 8879 36 100.0 31 .................................... TGGATTTACGAGTGGCTTTTATATCAAGTGG 8946 36 100.0 29 .................................... TAAATCACTAGCCATAAATACACGTTTGT 9011 36 100.0 30 .................................... ACGAGATAGCTAAAAAGCTTTATGATGCTA 9077 36 100.0 30 .................................... TTTTATTCTTATGCAGCAAAGAAAAGCATA 9143 36 100.0 30 .................................... ATAAAAGTGAAGCACCCAAAGTAGAGACTG 9209 36 100.0 30 .................................... TTTTTTGTTTTTTAAATTCATAAACTATTA 9275 36 100.0 30 .................................... ACAAGAACAAACTGAAGAAGAGACAATAAG 9341 36 100.0 30 .................................... TGTTGCTAGTACTCCAACGATTGCAGGGCG 9407 36 100.0 30 .................................... TAAAGATAATGAAACAGCTTTAAAGTACTT 9473 36 100.0 30 .................................... AAATAATTTCTAAGAGTTTCATCTGTTATG 9539 36 100.0 30 .................................... TTGGTGTTCCAATAGCCATAATATTTTTGT 9605 36 100.0 30 .................................... CCTATATTCCTTGCCTGATGATGAGGTAGG 9671 36 100.0 32 .................................... CAGAAAAAATCATAAAAGATTATCAAGATAGA 9739 36 100.0 30 .................................... CCATAAAGTGTATGTTTTATAGCTTGCCTC 9805 36 100.0 30 .................................... TTGTTTCCTTCTAAAGTTAGTATCTTTACA 9871 36 100.0 30 .................................... TAGTTGATAGGGCTAGGATAGTTAAAGACT 9937 36 100.0 30 .................................... TCTATAACTTCTAGACTAAAGTTTTCTACT 10003 36 100.0 30 .................................... CATTCAAAAAGCACAGTTGACTTATAGACT 10069 36 100.0 30 .................................... TCTATAGGCCTAAGAGAGTATGACTACGAG 10135 36 100.0 30 .................................... TTTAAAGCGAAAGATTAAAGGCTAGGCACA 10201 36 100.0 30 .................................... CAAAAACCACTACTTCATTTGGGTAGCAAG 10267 36 100.0 30 .................................... TATTGAAAGTATAGGTTTAGACATATTTTA 10333 36 100.0 30 .................................... GTAAGACATTATTAGCAACTAAGCGCCTAT 10399 36 100.0 31 .................................... CCAAAAGCTCCCCAAAACAACAAACCACTAA 10466 36 100.0 30 .................................... AGAAATTACCAAGTACGGCGATGTCTTTTT 10532 36 100.0 30 .................................... TAAATCGCTAGCCATAAAAACACTTTTTTT 10598 36 100.0 30 .................................... CTCCTTCAATGAGCCTTTATAATGCCCTTG 10664 36 100.0 30 .................................... CGCAAGTATCTAAAGTATCTAATATCATCT 10730 36 100.0 30 .................................... AAATAACCACTAAACCCATTTTGCAATCTA 10796 36 100.0 30 .................................... ACCTTTGTTCATATCGAACAACCTAATCTA 10862 36 100.0 30 .................................... TAACATAAATCCATTTGTAAAATTTTTAGA 10928 36 100.0 31 .................................... TAAGTTTTGAATTTGGGCTCTTGCTTGCTTT 10995 36 100.0 30 .................................... CATAGCATAAGCTATATCTCGCTCGCCTAT 11061 36 100.0 30 .................................... TAAAAAAACTGGGATAAGTGTAGGTGAGGC 11127 36 100.0 30 .................................... TCCCTTAAGCGGTCGTTTATATAAATAGTT 11193 36 100.0 29 .................................... AAAAGAGGATAGATTATAACTACTTTAGA 11258 36 100.0 30 .................................... TCTTTTAAAAGATGTCTTATCCTACTATCA 11324 36 86.1 0 ......C.............G..A..A........G | ========== ====== ====== ====== ==================================== ================================ ================== 46 36 99.7 30 ATTATAACATGTAGGATTTTAGGGGACTCTTATAAC # Left flank : TTGTGGAGTTGCTAATAGCATAGAAAGTCAAGAGTTTATACTAAGCCCAAGTGATAAAAAGCATCTACTTAGAATCTTTGATCACAAAATCTGTGTGGATGATAAATATTATTTGATAGATACTGCAATAGAGCAAAGTATAGGGTCTTACTTACAAGTTATCTTAGGAGAGAGGGAACATCTGCAACTACCTGTGTTAGATGAAAGATATATAAAAAATATAGCTAGTTAGTGATAGGTTGATGAACAAAAAGCGTGTCTATATGAAAAATGTTTTATATATTTCTTAAGACAAGACCCAGAAGATCTTGGCTTTAAGAAAACCGTGGTAAATCCACGTGTGTACGACTTAAGACTTTAAAATCTTAAGTCTTATTATAAGAGTCCCCTGAAATCCTACCTTCAGAGATTTGAAGTATAGCATTTTAAAGTTTAAAACTTTTTTAAGCTCTAAAAATATGCTTTTAAATCCCTATATTACGGGCCCAATCCCATCACGT # Right flank : GCTTTGCTACACTCACTAGCTTATCTTCCCTATACCAGTTCCAAGACCTTGAGGAGTAGTAACGCTTGTATTTACAACGCCTGCAGTTGTGATGTGTTCTATAAAAGCTTCGGCTAAACTTTTTATAAAAACTTCATTTTCTTTTGTTCTTTTAAAGCCTTGGGCCTCTATCTTTAGTAAAACCAATTCTTTTAATGCGCTCGCACTTAACATCTTTACCCTTATGTTGTTTTTTTAGTTATAAAGATTTAAGGGATAAAAAGATTCTGAAGTATAAATATATCGTTACAAGGGTGTCCTAGACCCTTGGTAACAAAACTAACTATAAGGCTTGAAGATGAAAATCTTAAAACTTATGTGAATACGTTTTTAAGTATAGTAGCATCTATAGTTACTATTATAGCATTTTTTCTAAACGTTCTCTAAGATAACCCCCTAGCTTTTGCTAGGGCGGCTTAGAGAAAAGTTTATTTAAAAGGATAGATATGCAAGATGTGGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATGTAGGATTTTAGGGGACTCTTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //