Array 1 19921-21478 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYE01000004.1 Halolactibacillus alkaliphilus strain NBRC 103919 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 19921 31 100.0 36 ............................... CCAGTCGGCATTGACATGGAACCTTTGCACCCTAAG 19988 31 100.0 35 ............................... ATATATATCACTCCTTATAATTTTAAGAAATAAAG 20054 31 100.0 35 ............................... TTCACCTTTACACTTTGGACAAATAACTTCCCTTG 20120 31 100.0 35 ............................... TATTTTCATCGCTAAAATCAATGTGATATTCTTTG 20186 31 100.0 36 ............................... TTAGTTTCACCGTTTACCTCTTTTTCCGTTATCTCG 20253 31 100.0 35 ............................... AATCAAAAAACCATTTAAAGATTATTTTGTTAGAG 20319 31 100.0 34 ............................... AGATAAAGTTAATGCTATACGTTTATTAATATTG 20384 31 100.0 34 ............................... AAAAAAATTACCGGTGCTCGTGCTTAATTTAAAG 20449 31 100.0 34 ............................... TTAAAAGTTTGACGTAGTGAGTTATAACTCTGTG 20514 31 100.0 34 ............................... TTGTATTTACGCTTTAAACGAGTCATAAAACGCG 20579 31 100.0 40 ............................... AGTTTGTAACTGTAATTGTTCTAGTATTTCAGAATTAAAG 20650 31 100.0 35 ............................... TATCAACATTAGATTGATAATGAGATTCAGAAAAG 20716 31 100.0 36 ............................... TTTTGTACCATCCCAGACAGCTTTCGTTGCTTGTCG 20783 31 100.0 35 ............................... TTGATTCAGCGATTATTAATGCTTCGTGCGTTGCG 20849 31 100.0 37 ............................... TAAACTTTGATTTAGTATTACCATTTTTAGCACCAGG 20917 31 100.0 35 ............................... ATAAGATAAGCAAGACAAAAACAAACGAAAGAAGG 20983 31 100.0 35 ............................... GCTCAGTTAAGAATCGGTACAGATGACCGTAAAGG 21049 31 100.0 35 ............................... TTGAAAAAACGGATCGAGTGTATCAATATCAATCG 21115 31 100.0 36 ............................... CAGACTGTTCAACGGTTATTATGCTAAGACCAACGG 21182 31 100.0 36 ............................... TCGCCATTAGAAGTTAAGCGTTCAGATGACGTTAAG 21249 31 100.0 34 ............................... ATCAAAAAAATTAGTTCCAGAACTAGAGCCTAAG 21314 31 100.0 36 ............................... AATAAAGGCGCGTATGACGTCGACTATTTCTTATCG 21381 31 100.0 36 ............................... TTTTGATTAAATGTTAAGTCGTACTCTACACCTTCG 21448 31 80.6 0 .......T..C.A....A.A..T........ | ========== ====== ====== ====== =============================== ======================================== ================== 24 31 99.2 35 TCGCACCCCATGTGGGTGCGTGGATTGAAAT # Left flank : TTAGAAGAATATCCTCCGTTTTTCTGGAAGTAGGTGATTGGATGCTTATTTTAGTAACATATGATGTTCGTACTTCAAGTATAGGAGGGACAAAGAGGCTAAGAAAAGTATCAAAGATTTGCCAAAATTATGGTCAGCGTGTGCAAAATTCAGTATTTGAATGTATTGTCGACTCTGCCCAATTCACTGAATTGAAATATACCTTAGAAAAAACTATAGATGTTCAAGAAGATAGTTTAAGATTCTATCGCTTAGGAGAAAATCATAAAAATAAAGTGACACATATCGGCACTAAAGAGTCTATTGATATAGAAGACCCACTTATTTTTTAGTGCGAATCATAAGCGCACATAAATTCTTTTAGTCATTCGCACTAAAAATTGCGTCAATTAGTCATTATATTAGATAAAACGTTTTAATATCTATATATTATTGAGATGAAAAGTGGAATAATAGTTGTTTTTTTCAACACTTGTGCTTAATAGTTGAAAAAAACGCAG # Right flank : TGACGATGAGGTTATGGTACTTTAAAATTAATGTCTGAAAGTATAGTTAATAATATTAAGATATTTTTAATAGTAGTCAAGAACCCTCGTAACTTCAGTCATGGGGTGTTGACAAGAAATATCAATCTGTACCAAGTCATGATCAAAGGGAGTTAAATGATGAATAAAATACTTATCGCGACAAAAAATCAAGGAAAAGTAGAGGATTTTAAAGTTCTATTTGAACCGAAAGGGATTGAAGTCGTCTCATTATTAGATTTGGATCAAACTATTAGTAACATCGAGGAGACGGGAAAAACATTTAGTGAGAACGCAATATTAAAATCAGAAGCCATCTCGTCCTTGCTAAAAATCCCAGTAATTAGTGATGACTCGGGATTAGAGATTGACGCATTAGATGGTGAGCCTGGCGTATACTCTGCACGTTATGCAGGGCTTGAAAAGGATGATCAGGCTAATATTGATAAAGTGTTAAGTAATCTAAAAGGTATCAATGAAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17584-18081 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYE01000006.1 Halolactibacillus alkaliphilus strain NBRC 103919 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17584 36 100.0 30 .................................... TAACTGTGATTTGGTTAAAGCATCAAAGGA 17650 36 100.0 30 .................................... CTCTGTAGCAACACCTTTTCCTTGGAATGT 17716 36 100.0 30 .................................... ACTTGGAAATACAGCTATTGATCTTCACAT 17782 36 100.0 30 .................................... AGTATAACAAAGACCAAGTGGAGCATTTAA 17848 36 100.0 30 .................................... AAGAAGAATAAAGATTTAATAAAAGCGAGA 17914 36 100.0 30 .................................... TTTTGATAAGCATTATGAGATATATAAAGT 17980 36 100.0 30 .................................... AGTTAATTATGCACGATACATGCTCGTCTT 18046 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTTTAGAGCTGTGTTGAATTGAATGATTCCAAAAC # Left flank : ATGGTCAAAACAGAATTAGAAAAGCTGATGATGTCCATTAATGACATCATCAGCGATCAATTACTAGAGCATGACTTAGATATTCAAACAACAGATATTACTTTTCCAGCATTATTTAAAGCCTTAAATATAAAAATCAATAATCAAGCGGCATCCATTAATGATAAAATCGCAGATATCATTCAACTATTTAAATATCAATCAAGAAAAAAGCTATTGGTCTTAGTTAATGCATGCTCATATTTAACAAAAGATCAAGTAGAGGAAACGCGTAATTATTTATCACTAAATAATGTTACCGCACTGTTTATTGAACCTAGAACGGTGAAAGGTTTTTGGCAATATATATTAGATGAAGACTATTATCTTACTTATGAAAATGTGCTATAATTGTAAAAAATGGGCCTTGAAAATTTAATATGCAAAAATAAAACATTCAATTCTGAAGTCTTGCCATGGGCGAATAGCGCGATTACGAGATCTCAATTTTATTCTACGAG # Right flank : TAAAAGTTTCAAAAAAGGGGAGGGGGAGTAGTATGCGTATAATTATTTCACCAGCAAAGAAAATGAAAATTGATACTGATGCATTTACGTATGAACAATTTCCGCAATTTCTTGAACAAACGAAAGAATTGTTAGCGCATTTACAAACACTTAGTTATGATGAGTTAAAAAAGATCTGGAAAGCTAGTGATAAAATATCGACAGAAAATTATGAACGCATTCAACATATGGATTTAGAATCAAATCTAACACCGGCGATTTTATCGTATGAAGGTATTCAATATCAACATATGGGGCCAGGTGTGTTTGAGCAGCAACAATTCGATTACTTACAAGAGCATTTGAGGATTCTGTCGGGGTTTTATGGTGTTTTAAGGCCATTTGACGGCGTGACGCCATATCGGCTTGAAATGCAAGCAAAACTGCATGACGATACATATAAATCAGTGTATCATTTTTGGTCTGATCAATTAGCAAAACAGTTATTTAGTGAGACAGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGAATTGAATGATTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //