Array 1 65049-63859 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKZF01000019.1 Klebsiella pneumoniae strain AS012246 AS012246_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 65048 28 100.0 33 ............................ CCTGGGAGACTCGGACGATAGTAGCCGCAAAAA 64987 28 100.0 33 ............................ CAACCCATCCTTTTAACACCTCGCGACAGCGTT 64926 28 100.0 33 ............................ TCCTATTTACACAGTACCTGGCGCGCCAGGCGA 64865 28 100.0 33 ............................ TGTCGATAAAGTCGAGCTCGACGTCGACGCGCT 64804 28 100.0 33 ............................ CAAAACCGAAGCGCTGTCACGCCTGAAAGAGCT 64743 28 100.0 33 ............................ CCAGAACCATGCCCCCGTGGTGGACATTGGTGG 64682 28 100.0 33 ............................ CCATGCGCACCTCTGCTGGCCATACTGTTTCCT 64621 28 100.0 33 ............................ TAGCTTTTAAGGGGAATAAAAAGCCCCCGGGCG 64560 28 100.0 33 ............................ TCGGGGCTTTGCTATTCTGCTATTTTGCTATTC 64499 28 100.0 33 ............................ CGCAACCACTGCCACCGATCGCATCGTAGCCGG 64438 28 100.0 33 ............................ TCGATGGGTCCAAAGTCACCGGACCGAGCTGGC 64377 28 100.0 33 ............................ CGCCAAGTGGAAGCCGGTTTACCGCGTGACCTT 64316 28 100.0 33 ............................ CTCACCAGCTCTGCGGCCTTCTTGCGATACCGC 64255 28 100.0 33 ............................ TAAATGAGGCTAACTGGACGCAGCGAGAGAACG 64194 28 100.0 33 ............................ CTCTTTTGTCTCTATCCCTGTCTACTGGGTTTT 64133 28 100.0 33 ............................ CGACTGGATCACGTACCTGATCAGCGTAGTGGT 64072 28 100.0 33 ............................ CACTGGGGTAACTGGGCATTCAGCCCGGCCGAG 64011 28 100.0 33 ............................ CGAGTTCGCACGCCACGATCTCGCAGGAGAGCA 63950 28 92.9 36 ...........A..T............. CTACCGGCGCTGACTGCGCATGGCGATAGTAGATCT 63886 28 67.9 0 ..........T...T.C....T.TAGCA | ========== ====== ====== ====== ============================ ==================================== ================== 20 28 98.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74256-73801 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKZF01000019.1 Klebsiella pneumoniae strain AS012246 AS012246_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 74255 28 100.0 33 ............................ CGATATTTACCGGGATTTCAGCCAGCACGCTCG 74194 28 100.0 33 ............................ CGAGCTCATCGCCTCCCTGGAGACGGCGGGCGA 74133 28 100.0 33 ............................ TATAGTATGACGATTGATTCCACTCATCAATTT 74072 28 100.0 33 ............................ CAAGACACCTGCAAACGGTATATCTTTGGAGTG 74011 28 100.0 33 ............................ CTGTTTCATTCGCTCCGATGGCTCGATCTCCGC 73950 28 100.0 33 ............................ TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 73889 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 73828 28 85.7 0 .C....T.............A......T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTTGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //