Array 1 685256-684617 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNXZ01000002.1 Labedaea rhizosphaerae strain DSM 45361 Ga0310470_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 685255 29 100.0 32 ............................. CGCACCTTGCGGCCGCGCTTGTCGGTCACGAC 685194 29 100.0 32 ............................. CTGGTACTCGAGTTGCGGTCCTACCGGAACAT 685133 29 100.0 32 ............................. GGGCCGTACCCCGTCAGCTCGGCTCTGCCCCC 685072 29 100.0 33 ............................. GTGTCGGTCACCCTGATCCGGTCAATCGGCGGA 685010 29 100.0 32 ............................. CCGTGGCCCGGACGGGATTGCCAGGCATCGCC 684949 29 100.0 32 ............................. CACACCAACGCCTTCATGTCGGGCCTGAGAAC 684888 29 100.0 32 ............................. GAGGGGACGATCGGCGAGCTGGACGCCGTGCC 684827 29 100.0 32 ............................. GTGAAGCTGCCGCCGGTCGCCCCGGACCCGGC 684766 29 96.6 32 ............................G GACCCGCCGCACCTGGTGCACGTGGTCACTCC 684705 29 96.6 32 .............A............... CCTTCGGGAAAGAGCTTGCGCAAGTTGAGCCC 684644 28 89.7 0 ........-....A..............G | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.4 32 GTCGTCCCCGCGCCCGCGGGGCTGTTCCC # Left flank : ACATCGTCTTCCTTGGGACGGCAGCGGCCGAATGGTGCCGGGGCGGAGTTGCTACGGAGACGACTCTGGTGGCGACGACTCTGATGGAGACGAGGAGTGACCGTCATCGTCCTCGCCGCATGCCCAGTCGGCCTCCGCGGCCACCTCACCCGATGGCTGCTGGAAATCTCGCCAGGGGTGTTTGTCGGCAAAGATCAGCAGCTGTGTCCGCGCGCTCATGTGGAACCGCGTCACCGAAATGGTCAAACCGGCCGCCCGATCATGATCTACAGCGCCACCAACGAGCAAGGCCTCACCTTAGCCGTGTACGGCCACGATTGGACCCTCACCGACTTCGACGGCATCCAACTCTGGCTCCGGCCCGACAAGACCAACCCCACTAACCAACCAGCGGGTTGGAGCAGCGCCACGCGCCGCCGCCGCGGCCGTAGGCCAAGATAGCCACGTCACAACTAAACAAAAAGAGCCTTCGCTTGCGCCAAACCCGCAGGTCAATAAGT # Right flank : GACGCCACCCGGGAGGTGTCCGAGGAGCTGGCGTTGTCCCCGCGTGCACCCGCGCGGCACGCGCCGCCTTGACGAATCCGGCTGCGGTGCGACGGTCGTCTCGGACCAGGCCGATCACCAGAACGCTGGGATGGGCGCCGAGCAGGGTCTGAACCCCACGCGCGTCAGGGTCGAGTTCGCTGTCCACCAGCACGACGTGCGGGTGCAGATCGCGAACGGCACAGACGGCCGCATCCATGCTGCGGGCCGCGCCACACCAGGCAAGGCTGCGGGTCTGGCCAACAAGCGCATGCAAGCCGTAGGCAGCCAGCGGCAGGGCGTCCACCGCTAGCACCCTCAGCACCCCGCTCCGGGGCAGGGCGGCTGGTGGCCGGGCCACATCGATCGTCGTTACGGTCACGGATACGCCTCGAGGTCGAACGGCAGGGACTGATGAGGAGAGCCTCGGGAACAGGCTCCATGACACGAAACGCCTCGACGGATGCGGTTCCGGGTGATGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCCGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 690902-690272 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNXZ01000002.1 Labedaea rhizosphaerae strain DSM 45361 Ga0310470_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================================================================== ================== 690901 25 100.0 36 ......................... TCCCAGCCAGTCATGCAGCGTCCCCCGCGCGGCCGG 690840 25 100.0 35 ......................... TCGGTGGACCACATCGACCAGAAGGTCGACGGGGC 690780 25 100.0 36 ......................... TCCCCCCTATGGCACCCAGAGACGCAACCCTGTCCG 690719 25 100.0 36 ......................... TCCCGTCATGTTCTCGGTGTCGATGGGCTCGACTTC 690658 25 100.0 36 ......................... TCCCTCCGGTGACGTGCTGGTCGTGTACGGGGTCAC 690597 25 100.0 36 ......................... TCCCGCGGACACCGGCCGCCAACTGGCGTTCAACGA 690536 25 96.0 36 ..T...................... TCCCCCATCGAGCACCTTGTCCTCGGCGAGCGACAG 690475 25 92.0 36 ...........A..C.......... TCCCGCCGGCATCACCGACGCGCAGTGGGACGAGCT 690414 25 72.0 94 ..G..T.....AT.C....CT.... TCCCCATGCCGATGACGTTCGGCACGACGAACGGACGTGCTCCCCGCACCGCGGCTGTTCCCGAGCCGAGGACCTGGCCTGACGACGCGGCGCC 690295 24 84.0 0 ..-..T.....A.G........... | ========== ====== ====== ====== ========================= ============================================================================================== ================== 10 25 94.4 42 GTCGTCCCCGCGCCTGCGGGGCTGT # Left flank : GTACTCAGCCAACTCGGGTACCTGCACGACGAAGGCCGGCGAACACTTCCCGCAGTCGTGTACGGCGGCCAGCCAGCAGGCGAGTTGGCGGACCTCGTTGACACCGCCTGGCAGATCGTTTCCTATGCAAGACAACGCAAGCGGGGAAACCCACTCATCGACCAGCCGCCCAGCGACACCCTCGGCATCGTCCAGGTGCTGAAACAACGGAAGCCACCCGACGCACCGACCAGACTCATCCCGCGCAGACTTGCCCCACAACGCCACGATCGCGTCGAGTGAACGCATCCACGCCCCATTGCCGGACAGCACGAACCTACGGCCGCTACATCTCAGACCACGACCTTCGCGTTTCAGCGAGTCTCAAACTGTCCGGTTTAGATGACTGGCCAGAATCTAGACAAGCAGGACAGCCTGCCTATGGGCTTGCGACAGCTGGACTCCGCGACAAACCGACCCGGAACGGCTGCCAACGTCCGATAACATGCAGGTCAGCAAGT # Right flank : TCTCCACCGAGATGCACGTTTGCAACATCACCGCGAGTGCTCCTCGCACCGCTGAGTCTGTGGACTGCGGCGTCCCTGAGTTGTCGGCGCGTTAAATGATGTGAATCAAGCGAGTTGCTTCGTCTGCTACGGCGACCACGGCGTCCGGATCGACGGCCGCGAGCGCCGGCAGGCAGGGCACGACGCCGCCAGTTCGGATCGCCTCGGCGACCAGCGCGCGGTTGGCAGGGGCTCCGGCGTGGGTGGCGATGGCGGTGACGGCGGTTGCCCTTCGGGTCGGATCGCTGATGGAGCGTGCGAGGTCGAGGGCCTGGTCGATGCCCGCTGATTCGGCGAGCGCCAGGGCTGCAGCTGCCTGGGCGTCGGCCTGCGGGAGCCCGACACCCGTCATGCCCAGGTGCTCGCGCACGGGCCCGATGGTATTTGTGAGCGCGAGGATTTTGTCGATCTCACCACGTTTCGCGTGCCACAGTGCTGCGGCAGCCAGCACGCGTCGGGCG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.57, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGCTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGCTGT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //