Array 1 73688-73323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063081.1 Helicobacter cinaedi strain D7095 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73687 36 100.0 30 .................................... TGTGTGTCCCATGTAATTGGAATTTTGCCG 73621 36 100.0 30 .................................... TGATTTGATTATCGCGTTAATACTTTTTGG 73555 36 100.0 30 .................................... ACTGCTAAACGCATAGGTGTTCAGCTCTAC 73489 36 100.0 30 .................................... ACTGCTAAACGCATAGGTGTTCAGCTCTAC 73423 36 100.0 30 .................................... ACTTGCCATAAAGGGCTGTTGTTCTTTTAT 73357 34 86.1 0 ....................A--.........T.T. | T [73328] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : TCTATACAAGCCCATACAATACAAAGCCATTATGCTAATTTTGCCTAGCCACCTAGCTTAAGATCTCTTAAAACCTTTAGACTGCCCCTCTTAACACATCTCATCTTTTAAAGCCTACGATTTTAGAATCTTGCCATACTTTTAAAACCTTGTCATACTGAGACTTTTGCCGAAGTATCTATATTCTAAAATTCTTATAAAACCCTCATATACGAATCCACCAAACCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCAG # Right flank : ACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTAAAAAAATGACGTATTTAAAAGGAAATAGATGAATAACTTCAGCAAAATCGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACACCCACACAAGATCACAATACCACAGATTCTAAGTCTGGCTCTTCACTTATGTGGCTTGGCTTTTCTA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 593964-597375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063081.1 Helicobacter cinaedi strain D7095 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 593964 36 100.0 30 .................................... TTAAAACTTTATTTGAAATATAGAATTACT 594030 36 100.0 30 .................................... GATATAGTCTGAAAGCCTTTAGCAAACTGC 594096 36 100.0 30 .................................... ATTAGAAAAAGAAAACTACGAACGACTTTT 594162 36 100.0 30 .................................... GCTTAGCATACTTGCTCCAATCACCGCTCC 594228 36 100.0 30 .................................... ATAAGAAACAGCATTCCATTACACTTTAGA 594294 36 100.0 31 .................................... TAAAAATTTCAAAAAGGAGAATCTAAATTAT 594361 36 100.0 30 .................................... GATGAAGTTATCGACAAAAGCAAATCAAAA 594427 36 100.0 30 .................................... AGGAAGCGGTATATATCCCCACGAAATGTA 594493 36 100.0 30 .................................... GATACACTCACACATTCCACACCTAGAATC 594559 36 100.0 30 .................................... CTTCCAAGAAAATGAAAAGATTCTCCAATT 594625 36 100.0 30 .................................... AGCGACATCGGGGATTGCACCGAGTCCAAG 594691 36 100.0 31 .................................... TTTAGACATCCGCGACCTCCGCCTTGCTTCT 594758 36 100.0 30 .................................... ATGCAAAACAACATTAACTCTTTGATCAGA 594824 36 100.0 30 .................................... GAGGTTCTTTTTGCAAAAAAACAAATCGGC 594890 36 100.0 30 .................................... ATCATGGCTTTTCGTTTCTATCGCCGCAGA 594956 36 100.0 30 .................................... ACACTATGTTATCGGAAGTGGGCGCGTGAA 595022 36 100.0 30 .................................... ACGATAGATAAAGAAACTGCGGAATTAGCA 595088 36 100.0 30 .................................... AGAAATTTCTTATGCTGGTGGCCTTGATAC 595154 36 100.0 30 .................................... CCGCGTAGTAGCCGCAATTATCGGTGAATT 595220 36 100.0 30 .................................... CTTAGCGTCATTAACCTTCCACTGAATAGA 595286 36 100.0 30 .................................... CGACCAAAGCACCGGAAGTAATATTTATCA 595352 36 100.0 30 .................................... GAGGTGTAGTATGGCTTTTAAGTTTTATCG 595418 36 100.0 30 .................................... TACACTCTCGCAGGGCACTATGTTGTCGGA 595484 36 100.0 30 .................................... TAAAACAGTTAAAAGAAAAAAAAGCGACAT 595550 36 100.0 31 .................................... GCTTCGCAATAATGTTATTGCATATCGCCCC 595617 36 100.0 30 .................................... TTTTTCAGTAATAGAACGACCGAGGCCGAG 595683 36 100.0 30 .................................... ACAGAGGCACAAGATATAAAGAATTTGATG 595749 36 100.0 31 .................................... CGCCTCGACGACATTGCTCATCATATTGGAA 595816 36 100.0 31 .................................... GGAACTGCGACTGTTTATGACGGTGTTTCTT 595883 36 100.0 30 .................................... CAAAGTTGTGTTGTATCAACCTTATCTTTA 595949 36 100.0 30 .................................... CGCTAGTGAAAGCCTTCTTGGACTCGGTGC 596015 36 100.0 31 .................................... ATGATTTGCCGTGAAAATATGCAAGGTGGCG 596082 36 100.0 30 .................................... TGACGTAAATAGGATCACTCGTGCGGTGTT 596148 36 100.0 30 .................................... GATTCACCCCATGGCGTCTCTTAATTCTCA 596214 36 100.0 30 .................................... GGCGTGAGTGGAGCAATGCGTGGCCTCGGT 596280 36 100.0 30 .................................... TCTTTTATGTCTATCATATCCATAGGATTT 596346 36 100.0 30 .................................... GCGCCGGTTTTGAACTCTTCATTCATAGAT 596412 36 100.0 31 .................................... CCTTGTGCCGGTTTTTCTCCAAGAAACAATT 596479 36 100.0 30 .................................... TATTTCCTCACGCTCTTTATCACTTGGTAT 596545 36 100.0 32 .................................... TTTTAAAAACTCTCTTAACTTTCATAATCCAA 596613 36 100.0 30 .................................... GCCGATCGATACCAGGAGTATCGTTATCGA 596679 36 100.0 30 .................................... CGTCCTCAATGCTTTTTACTCTGTTTCTGA 596745 36 100.0 30 .................................... AGATTCAATAGTAGGATTTGATAAAATTAA 596811 36 100.0 30 .................................... ATATGTCTCATCATTTATAAATGTGCGTAT 596877 36 100.0 30 .................................... ATGACACAAATAATTATAATAGCGGGATTA 596943 36 100.0 31 .................................... CACAACATCGGGGATAGCACCAAGTCCAAAA 597010 36 100.0 30 .................................... GCCGAAATCGCTCATCTTATTGGAATTTGT 597076 36 100.0 30 .................................... CAAGAGCTTTATGCTACAAAAGACAACAAA 597142 36 100.0 30 .................................... TATCGCCGCCGAAGGCGTCGTTTTTCTTTT 597208 36 100.0 30 .................................... CATCATTGGTTCGTCCCTTATCGTCTTTTA 597274 36 100.0 30 .................................... CCACCGACACTTCCATTACCGGCTTTTCTA 597340 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ================================ ================== 52 36 99.9 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : TTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCATAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTACAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //