Array 1 168349-173601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 168349 37 100.0 37 ..................................... GGGTAAGTTGCTGTCATTGAGTAAGGGGTCAGTTTTG 168423 37 100.0 35 ..................................... GTAATTCTGACGTAGTTTTCCAGTCCCCCGGCTCT 168495 37 100.0 33 ..................................... TGACGAAACCACACCAGGACTTAGTAGCCAAGA 168565 37 100.0 35 ..................................... CTACCGAATCAATGAGGACAGGGTGTCCAAGATGA 168637 37 100.0 34 ..................................... GCGTTGAGGGCAGTCTCCTGTATGGCTGCGTTGG 168708 37 100.0 37 ..................................... GCACCTTTGGGTTCGTGCCAGATTCTTTTGTCGTTGT 168782 37 100.0 34 ..................................... TGTGTTTAGGATGATTAGTGTTGATGGCTATGTT 168853 37 100.0 35 ..................................... CGAAACTACCAAAGGAGAAGTACGGGCGTTCTATG 168925 37 100.0 33 ..................................... AGGCTTTTAGAGGAAGCCAACGCCGATGAAGCC 168995 37 100.0 41 ..................................... ACAATGAACCCATGCTTAGTTACCCATCTCTACCTATGAAA 169073 37 100.0 31 ..................................... CTGTCCAGCCGCCCTGAAATCCCGCGACGGA 169141 37 100.0 34 ..................................... GGTAGTGGGGAAGGCGAAGGGCGATCGCCTCTCG 169212 37 100.0 36 ..................................... TCTGTATTTAAGGTTAGAACTCCCGCCCCGTATAGT 169285 37 100.0 33 ..................................... AGATTACCTACTAGGCAGTTCGCGCTACGATAC 169355 37 100.0 34 ..................................... TCCTTTAGATAACTATCTTCTCTCAAAAAAAATG 169426 37 100.0 34 ..................................... AAACAAGGCTAGGAGCAACCATTGTGATGGCTGC 169497 37 100.0 42 ..................................... CTTCCAGCCAGAAGGGCGGAAAGAGACGGAGGAAGCGGTTAA 169576 37 100.0 39 ..................................... TGGAAACTGCTATCCGAGAGATAGCACTCTTGTAAATTT 169652 37 100.0 39 ..................................... GAGGAGAAGTCAGGGAGAATTTATAACACGCCGATTAAG 169728 37 100.0 34 ..................................... AAAACAGATGCGGCAAACTTAGGATCTGACAAAA 169799 37 100.0 41 ..................................... TGACTTTCGATGGGTGACAGACCTTCTTAAGGATTACGGGT 169877 37 100.0 34 ..................................... TTTTATTATTAGTCCCATGTGACAATAACATCGA 169948 37 100.0 38 ..................................... GGGTTCAGGCCCGGGGGCAAAACTGCCTAAGAGGCCGC 170023 37 100.0 33 ..................................... AGCCTCACCAGCAGACCCCGGACTGGGATAACC 170093 37 100.0 45 ..................................... TAATCTGTCTTATGTCGCTCGGATCAACGTAATGTTGATCACGAC 170175 37 100.0 35 ..................................... GCTGATGGGTTGAATGAAAACACGCTTGTGCTAAA 170247 37 100.0 33 ..................................... AGACCAACCCAACACCAATAAACCTTAGACCCA 170317 37 100.0 34 ..................................... CAGGACTCCGTTCTGGTACAGAATCATCCCCCGT 170388 37 100.0 32 ..................................... GAAACAAGGGGAGAACCACATCCGATGGATAG 170457 37 100.0 32 ..................................... AAGCAACACCTACAGGAGGAGAAATCATGCCA 170526 37 100.0 34 ..................................... AATACCCAACGAAATGTAAAGAGCATAATCGGTA 170597 37 100.0 31 ..................................... TCAGCTACAAATATTGACCAGTATGCGGCCA 170665 37 100.0 39 ..................................... CCCATCATTGCACCTTGAAGGTCTTTCCCCGTGTGTCCT 170741 37 100.0 34 ..................................... TGAGAAACAGGCGGCAGCAGCGTTTCAAGCCGGG 170812 37 100.0 35 ..................................... ATTGAAAAGAAGACAGCATGAGGAAAAAACACCCG 170884 37 100.0 33 ..................................... GCCCAAGCGGTGCAACGCGCCGCCCAAGCCAAA 170954 37 100.0 38 ..................................... CCAAGCCAGTGATTCCGCATCTTGCCCCGTTGTGGAGA 171029 37 100.0 35 ..................................... GATTTTTCCCTCGGGGATGGGTGCATCAGGTGCGA 171101 37 100.0 39 ..................................... CGTTTTCCGCTCGGAGTGCGCTTGCTCCAGAGTCGGTAA 171177 37 100.0 37 ..................................... GTAGTAAGCACGCTCCGATATTTTGGCGACTCGGGGG 171251 37 100.0 34 ..................................... CTTGGCAAGTTTTCCCTCTGCTGATGCCAGCTTA 171322 37 100.0 42 ..................................... CCACCCGAAGGCAATCCACGCCACAAACTGAGCGACTCTGTA 171401 37 100.0 35 ..................................... TTGTACTGCCTTGGGTGGGCTGCGCAAGGATTACC 171473 37 100.0 34 ..................................... AATATGTGCAAGGATGGGGGGGGAGACAATCCCC 171544 37 100.0 36 ..................................... GAAAAGAAAAACTCAGTTGTATTTATCCGGTTGCTA 171617 37 100.0 33 ..................................... TTGAATGCCTTCAAGTAGAGATTGACTACTTGA 171687 37 100.0 34 ..................................... TGATGATCTGTCCTGCAAGCTCTTTAAGAAGAAA 171758 37 100.0 34 ..................................... ATCATCGTCTCCAGTCAACGTGCAACTTGTTGAT 171829 37 100.0 33 ..................................... AAGGAAGCTTAAACCCTTACTGGGAGAGGGTTT 171899 37 100.0 39 ..................................... CAATCACATCAATCTCTTTAACCGACTTCACGATTGAAA 171975 37 100.0 39 ..................................... TCTATAATTAGTAGGCATTATTTTTTAACTCAGTAAATT 172051 37 100.0 36 ..................................... TCGTACGGAGACGTCTTGCCGGGCCGGCAAGTACTT 172124 37 100.0 34 ..................................... TTGGGCAAAGCGATCGCTAGGATTCAAACCTAGT 172195 37 100.0 36 ..................................... TTACAGTATGGGTTCAAGCCATGAGTAGTTACCCAT 172268 37 100.0 34 ..................................... AAAATATGCTGAATTAAAAATACATGGCATCCCT 172339 37 100.0 38 ..................................... CAAGCGAAACTTAGCCAAACTGTAAGGCCTATACTTAG 172414 37 100.0 32 ..................................... TGCTCATCAAGCCCGCTCCCTTCTGCGAGTTC 172483 37 100.0 35 ..................................... TATTAAACGAGTCCCCATTGAAATCCCCCGCATTA 172555 37 100.0 34 ..................................... GGTACACTTCGTCGTCAAAGAACCTGAACAGCAA 172626 37 100.0 35 ..................................... CTTCGGCCGGGTGGGTGGCACGGATTAGTACAGCC 172698 37 100.0 34 ..................................... CCGGATGTCGCTCATGATGGGGCGCTTGTTGTTC 172769 37 100.0 35 ..................................... AAAGCGAGAAAGCAGGCAAAAATTATAAAGGGAAA 172841 37 100.0 38 ..................................... GTAAAAGAAGACCGAAAATTATCGGGATTACATCCAGC 172916 37 100.0 33 ..................................... AATTCAGGGGAATGACACAGCAAGCCTGGCTGA 172986 37 100.0 32 ..................................... AGAGTGTACGGAAACGTTCCCATACGCCCCTC 173055 37 100.0 35 ..................................... ATTGCGATAATTACGGGGATAAATGAACTCTTCTG 173127 37 100.0 35 ..................................... TTTGCCCAAACACATAAACGCTCTAATGATGTAAT 173199 37 100.0 42 ..................................... AAAATCGGGATCAATCACTTGTCGAATCCAGTCGCGTTGCGA 173278 37 100.0 34 ..................................... CCCCTATTTGTTCTCTGACGGTGGTCGCGATTAT 173349 37 100.0 36 ..................................... AGCCGGGACAGTTCCGCCCCCGGCGAGGGCAGGAGC 173422 37 100.0 36 ..................................... GAGAGTCCCCGGAAGCCCGCACAACATTAAACCGGA 173495 37 100.0 33 ..................................... ATAACTCAAATCTCTCTCTCCTTAAAGCGTGAT 173565 37 94.6 0 ........A....................G....... | ========== ====== ====== ====== ===================================== ============================================= ================== 73 37 99.9 35 GTTGAAATGCTGTATAATGCCTATGAGGTATTGAAAC # Left flank : TTTTACCCAACAATTGAGCAGCATTTTGGACTATTTCGAGCAACTCGAAGAATTAGACACGGACAACGTTCCTCCCACGACTCGCGCTATTGAGATTAGCAACGTCACTCGGCCGGATACTTTAAGGACGATGGAAGACCGGGAGAAGATGCTACAAGAAGCACCGGAACAAGAGGGGGATTTTTTCCGAGTCCCTCAAATCCTCAGTACAGAGGATTAGGGACTGATCTTTTCACCCTACCCTATCCCACGATGAGGGGATTTCCCCCAATTTGCGCGACGGGGTAGGTGTTTTTTTTTGGCTTTGGACAGATTCGGCTGAAAGGCTTGGGGGGATTGGGTTTGATGGGGGTGGTCAAGTTGAGGGTGTCGCGCACCTTACAGGGCAAGGGTTTCAGCCGTTTCTTGCTTTTGCTGGGAGGCTGTGTTATAGTTTTGGGGTGGGTGTCGCGCAAGTCAAGCGGGAAAACCAGATAGAGTAACGCTTTCAGGCTGCCGCA # Right flank : CGTAGATAAAAGAAAATCGCGGAAGAAAGCAAAATGATTAAGTGGCAGACTTATCGCGGATATATGTCTCTTGACACCAGCGATCCAAACCAAATAACGAAAATTTTGTTAGAAGGCGAGGGAAAGGAATTTTTAGAGCAAAGATTAGCAGAAGGGTGGTATGGACGGTATGGCCACCTATATCACGATCATGCAAGAGCTATTGATCTACTCGCGGCCATTACTCTTTCTCCGGGAGATTTTGCCTTTCCGAAAATTGTAGAAGGTCAGGAAATACTGGAGAAGTACGACTCACGGAAGAAGTACGACTCAGCACCAAGATCAAGCCAAGAAGAATATCGGACATATTGAGATAGAGACATGAATCTCTCGGAAAATCCAACGACAGAGCGGTTAATACTGGCAAAATTAATCAACGGTGTAGCATTACTATCCTCAGCTAAATCATCGGTGTCGTAGTGCCGAACAATATGATGTTCCCCTAACGGTTTTTGAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATGCTGTATAATGCCTATGAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 650839-653484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 650839 37 100.0 36 ..................................... TAGGGGATCTCGCTTATTTCTCCGTTTTTGTCGGTT 650912 37 100.0 36 ..................................... ACTTTTGTTCAGGATTTTAATGATTCTTATGAGCAA 650985 37 100.0 35 ..................................... AGAGAATGAGAATCGGCAGGGCGGATAATTTTTAT 651057 37 100.0 35 ..................................... ACAAAAGACAAGACAGAATAATTGAAAAACGAGTT 651129 37 100.0 36 ..................................... AATCGGCAATCAAGCTGGCGATCTCGCACTCCAAGG 651202 37 100.0 35 ..................................... CAGAATCGCTCTCGCAGACAGCCAATCGCCCTTTT 651274 37 100.0 37 ..................................... TTAAAAAATAACTACCATCGGGTAACGCTGGGATGCG 651348 37 100.0 34 ..................................... GTTCGACAGATTCAACGGGGGGTTTAAATTCTTC 651419 37 100.0 35 ..................................... GTAGTAAATTCGGCTTTGGGACACCCGTTTGTTAG 651491 37 100.0 38 ..................................... TCAAGGACAGTGGTAAATAGGAATTTATTCACCAAAAT 651566 37 100.0 37 ..................................... CCGAACCCGTGGAGATTGCCCAAACCGCGACTGCAAC 651640 37 100.0 36 ..................................... TTAGCCCTAGGTCAACAAGCGGCAATGGAGGGGATT 651713 37 100.0 35 ..................................... ACGCACCCTCCCTAGATAGCTTACTAACTGGAAGT 651785 37 100.0 36 ..................................... TCTCCCGCTTTTGTGGAGGTACTCGGACTCTGATAC 651858 37 100.0 37 ..................................... TTTAGTATGCGTTGGTATATTGGAGAGCCTCGTCAGT 651932 37 100.0 36 ..................................... TTACACGGGGGTTGTCCCCCCGAAAAATTGTACTAT 652005 37 100.0 37 ..................................... GGTAGAGGTTAGACTTTGCCCCTTTAAAAACCTAAAT 652079 37 100.0 33 ..................................... TGCCTCAGCACTGCTTTCCGTCCTAAATCGAAA 652149 37 100.0 37 ..................................... AACCTCAGAGCGTCGTAGTAGGCTTCAATCGCCAGTT 652223 37 100.0 36 ..................................... GACTTAATCAGAAAAGCCTATGCGGGTTTTTACTTG 652296 37 100.0 33 ..................................... ACAGTAGCCTAAAACAAACTTTGCTTCTTCATC 652366 37 100.0 34 ..................................... GATCTAATCCCGTGCGGCTACACACCGCGAAAAA 652437 37 100.0 34 ..................................... TTCTCCCCCAGTCCTTACGCTTTCCAACAAGTTC 652508 37 100.0 36 ..................................... CGTGGTGGTCAATTCCACATCTCCCGGCTCATCTTC 652581 37 100.0 35 ..................................... CTGGGGGTGTCCGTGGCATCTTGCGGCGGTCGGTG 652653 37 100.0 36 ..................................... CCTGTTTGACGACCAGCGCGCCACCAGTGCGGAAGC 652726 37 100.0 36 ..................................... TGTTGATTTTTCAACACGCGGCGGCGGAATATATGC 652799 37 100.0 34 ..................................... GGCAACGTAACACCCCGATTGCTACAGAAGAAGG 652870 37 100.0 35 ..................................... TTGCTCCACGATTTGGGAATAGGGATGGCAAATCC 652942 37 100.0 38 ..................................... TGATCAACAACCATGAACAAATAAGCAAAAAACAGAAT 653017 37 100.0 34 ..................................... CAGGATTCTGAAAACAGCGATATCGAAAAGTAAA 653088 37 100.0 34 ..................................... CAGGATTAGAAAAACATCGGTAACGGAAAACGAA 653159 37 100.0 35 ..................................... CGGGGGAATAAGTGACATTGATTGCTATGGTCAGA 653231 37 100.0 36 ..................................... GTTTTGACATTATACCATATAGTTGCGATGTCTGAC 653304 37 100.0 35 ..................................... AATGGAGAGGTAAAAAATGGCTATGCTGGCATAGA 653376 37 100.0 35 ..................................... TTATGGCACTGGTTTGGGTATTGCTGAGATAATTG 653448 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 37 37 100.0 36 GTGATCAACGCCTAATGGCGATCTAAGGTTATTTCAC # Left flank : GCTTGTCAGGGATTTTAGAAGGCGATCGCGTCCGCAACCTCGAAACCATGATTTTAACCGCCCTCACCCGTCCCCCCAGTCCTCGAAATACTGACCCTTGGGCCGTCTTTGGCAGCGAAAAACCCACCCCCGCCCCCCCCGAAACCCTCCTCACCCGCACCCAGCGCCTGACCCACCATGCCATCATCGGCCTCCAGTCCACCAACACCCCCAAAGCGCTCAAACTCGCCGAATTTCTCCAACAATTACAAACCATCCTAGTCGCCACCTCAGAATTTAGCGAAGAGGATCAAATCACCGCCCTTGAACAAATCCGCATCCTCGCCGAAGTGGGGCTAGAGAATCCCGACAGTAGCCACCGCAAAGCCGCCAAAACCGCCCTCCATCTCCTCAAGGGCAGTTTCATGGACTTATCTACTCCTGCGCCCTTAATGGATGCCTCGGAAGTCTTACCGAAGATTGCCACCTTATTGGGTCTGGAACTCTAAGGGATCAACGCC # Right flank : CAGCAGCCGCCAGAACCCTTACAGAACAAGACCTCTCAGACAGTTTTGCAAGCACCCCCTTCACCTCTATCAACTTACCCCCCCATTTTACCATTTTTCCCAAAAAGTCAACACCCAGAACCCAGACTTCATAAAGGTTTTAGGATTTTGCAAGCACCTCCTGCCCCCTCTCACCCCCCTCAAACCCAGAACCCACAACACTTACAGCAATTTTCAGCCCCCCCTTTCCCCTAACAGCCCCAGGTGCTTGCATTTTTTCAAATCACCCGAAACCCCCCCTCATCCAACAGCCAAGTATTCGGACGATTGTACTTCGGCAAATCCTGCACACACTGCCGAGACAACCGAATCAAAATCAAATCATCCTCCTTCGTCAACACCCGCTCCAACTCCCAGCGCAACTTCTCCCGCATACGCTGACTCAACCAACAGCGAAAAATCGAATACTGCAACCGCTCCCCATAGCCTTCCAACACCTTATACGCCTTCCGCCACCGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCAACGCCTAATGGCGATCTAAGGTTATTTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1249760-1247841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1249759 37 100.0 36 ..................................... TCGCTAAATAATCTTTAATAGATCCTGCTAAATCAT 1249686 37 100.0 33 ..................................... TTGATGGCGATCGCCCAAGCAGCAAATCTCCCT 1249616 37 100.0 35 ..................................... AGGAACTCATTCACCGAGGGTACACCCGTTCGCTC 1249544 37 100.0 32 ..................................... ATCCGTAACAACGTCACAGCCCACATAAGATG 1249475 37 100.0 34 ..................................... ATTTACCCTTACCGGGCAGACCGTAGATCGCAGA 1249404 37 100.0 35 ..................................... GGCAGATGGTTGAAGATATCACCGAAACTTTCCAC 1249332 37 100.0 35 ..................................... AAAGGCGTAGAATCCATAGTCAAAATGCAGGAAAT 1249260 37 100.0 34 ..................................... CTATCATAGCACACTGCTGACACTATGCCCAAAT 1249189 37 100.0 42 ..................................... AAAGTGATGCCAACGCCCCCAGCCTTGATCGTACCGATGAAG 1249110 37 100.0 39 ..................................... AAGAGAGATGGTATGATAGGGGAAATAGGAGGAACTATG 1249034 37 100.0 35 ..................................... GCGCTCAAGGGGGCGCAGTCTGCCCGCCCATCCTC 1248962 37 100.0 37 ..................................... TACTGGCAAACCACTGATTTATCTCCTCTTCTAACTC 1248888 37 100.0 34 ..................................... CTGGTACTGGTGGGTCTATTTTGCTTTCCTCGAC 1248817 37 100.0 34 ..................................... TTCTCCTAACGACGCGTTCGTACATTTGGCTTCC 1248746 37 100.0 34 ..................................... CTCAAAAACATCCTCAAACCTCACGGAAAAACGA 1248675 37 100.0 36 ..................................... GCCATTGTACGATGAGCGGTGCTAGCGTCAAGACCA 1248602 37 100.0 43 ..................................... CCCTTAAAAAGCGTTAATGCTAACGCTCTACCTGCTACTACTT 1248522 37 100.0 33 ..................................... ACACCCGAAGACCGAAACGCAGGGGCAGCAAGG 1248452 37 100.0 36 ..................................... AAGACCCCGGAATCTGTCGTCCTGCCGGGCCGCCCC 1248379 37 100.0 39 ..................................... TTTGAAACCGCTTCTAAGTTCTGGAAACCTTCATCTAAA 1248303 37 100.0 30 ..................................... TCAGCCCAATTCCCTGCCCTACTTATCCGA 1248236 37 100.0 33 ..................................... CCATTTCTCGCTTTCATAAGCGGCTTTGATGCT 1248166 37 100.0 34 ..................................... GGAATAAGACCCGACGACCAACACGGTGCTAAAC 1248095 37 100.0 38 ..................................... TAGATTTTTGTTGAGCATTGGGACGGACAATCTCTAAT 1248020 37 100.0 35 ..................................... TTCTGATCTTCAGATCCGCTTACTTAACTATTTGT 1247948 37 100.0 34 ..................................... AGAAAAATTAGGATAAAACACAAAAGAATAGAAA 1247877 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 27 37 100.0 35 CTTGAAATGCTGTATAATGCCTATTAGGTATTGAAAC # Left flank : GGACTTAAGCCACTTTTTCGCCAAATTAGTCCCCGAAGATGGCAAAAGCTACATTCACGACGCAGAAGGCCCCGATGATATGCCCGCTCATATTCGTTCTGCTCTCACTCGCACCTCGGAACAGATTCCCGTCGCTCACGGGCGTTTAGTTTTGGGAACGTGGCAGGGGGTTTATTTGTGGGAACATCGCCAACGCCCCCATCAGCGCCAAGTGGTGATTCATGTCCAGGGGGCGTGATTGGGTGAGCAGGAATGGTTTCTCTGGGGGTTTTTTGCGCGACGGGGTAGGTGTTTTTTTTCGAGGAACGCTGAGGCGGGCTGAACCCCAAGGTGGCTCTGGTTTTGGGGGCTGTCGAGGTTTGGAGGGTGTCGCGCACCTTACAGGGCAAGGGTTTCAGCCGTTTCTTGTCTTTTCCCGGAGGCTGTGTTATAGTTTTCTTGTGGGTGTCGCGCAAGTGAAGCGGGAAAACAAGGTGAGGTAACGCTTTCAGACCGCCGCT # Right flank : ATTAGGCGTTGAAATTAAATAGGGTCTGCTGAATATCCCTCTAAGCAGTGTTACTAGGACTTTTAGCCGTTTATACCAAATTAAATAGACTTGAGGGCAAAAACCTGAATTTCCCCTGTTCCCTGTTCCCCGTTCCCTGTTCCCTAGCCCCACGAGTAGAGTTATATTGCTACGCAACGCTTCGCGAACAGCAAGCCCTAAATAAATTTCTGATTATTCTGCAATATCCCGATGGGTAAAAGGTTTAGCCTCTTTCCCTGAATAAGTTGCGGCAATATGACCTTGCCCAATCAACTTATATTTATAAGTCACTAATCCCTCTAATCCCACAGGGCCACGGGGGGGCATTTGTTGGGTGCTGATGCCCACTTCTGCCCCGAATCCGTAGCGGAAACCATCCGCGAAACGGGTAGAACAGTTATGATAGACTCCGGCCGCATCGACAAGATTTAAGAAGAGTTGCGCCGTTTCTGGGTTAGTGGTGGCGATCGCATCCGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATGCTGTATAATGCCTATTAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 4 1263700-1265664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1263700 36 100.0 39 .................................... TTTGACTGGATGACAGAAGCCTGGGGCGAAGTGATTGCG 1263775 36 100.0 38 .................................... TGAGAGGTTGCGTATAAGAGTTTGGCCAGGGTGGTGAA 1263849 36 100.0 40 .................................... TGTTGTCACCCCCGCTGAAGTTCGAGAAGGTTCCTTTATA 1263925 36 100.0 38 .................................... GGAAGACGTTTGCAAGGAAGGACCGACGGCCTTGTATG 1263999 36 100.0 38 .................................... GAAAAAGCAAACAAAGCAGGAAAACAGGATTTGGTTGA 1264073 36 100.0 40 .................................... AAAATCAATGGATTTGGCAGGATTTTAACTTAACCCTTTA 1264149 36 100.0 37 .................................... TACATTTTGAACTGCAAGAACCAGACGGAACACCAGT 1264222 36 100.0 38 .................................... ATCACTGGAATTGCCTGCTGTAGCAAATCCCATACCTC 1264296 36 100.0 38 .................................... TTTCAAATCGTTGATGACTGTCTAGGCCCAACTTGTTT 1264370 36 100.0 39 .................................... AGCCATCTAATCGCCCGCATTGATGCGGCGCAAAAAGAG 1264445 36 100.0 39 .................................... TGTCTTTTTGGCCGGTGTCTTTTTGGCCGTTGTCTTTTT 1264520 36 100.0 36 .................................... CCATAGAAGATGTTGCTGCTATAACAAAAAAACTGG 1264592 36 100.0 37 .................................... TTCGTGAGTAGAGGTGGAACCTCCTTCCTCCTTCAAA 1264665 36 100.0 38 .................................... ATCTTCCCACATATCGCACGCTTGACCACGTTTCGGGA 1264739 36 100.0 38 .................................... CATCTGCTCTGGGTTAAGCAGTGTTTCCGTTTCTGTTT 1264813 36 100.0 36 .................................... AGCAAATTCTCCTGACGCAAGAGTTTGTTCAGATCC 1264885 36 100.0 37 .................................... CAAAATCTGGCCAAAACTATCAAAAACCTCCGAAGGA 1264958 36 100.0 43 .................................... CGATTTCTTCCTTGTCCAAAACCGTTTCCTCGAAAGAAACGGT 1265037 36 100.0 39 .................................... TTCTATTCCGGTGATTGTGTAATCAGAAATCGTGATTTC 1265112 36 100.0 39 .................................... AGTGAGGATGTCTGCGATCCAGTATTCGTGTTGAACAAG 1265187 36 100.0 38 .................................... CTTTTTTAGCGATTGCCACTTCCTCCTCTCGCTCCCAG 1265261 36 100.0 36 .................................... CCACCCACGGGGGACTGTCTCCCTCATCCCTGCAAG 1265333 36 100.0 40 .................................... GAAAAATAGGATAAGCTAAAGGTAGCCCGTCAAGGCTGAA 1265409 36 100.0 40 .................................... ACCCGGTGGACAGTCCCCTCCTGTGGGGCGATCGCGAAAA 1265485 36 100.0 35 .................................... ACGCATAGTTTTGATAATGTGGCTGCGAATTTCTC 1265556 36 100.0 37 .................................... GAATCCATTGGATTCCATATGCCTGAGAGATAGTTAA 1265629 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 27 36 100.0 38 GTTCCTCTTTAATGGGGGACTAAATTGAATGGAAAC # Left flank : GGGGGATATTCCCCTTATCTGATTCGCTGATGTTGTATGTCATCGCCTATGATATCCCGGTGGATAAACGCCGTAAGAAGGTGGCGGACTTGTTGGAGGGTTACGGCCAGCGTGTTCAGTATTCTGTGTTTGAGTGTGTGTTAGATAGTCGTCGTTATGAGGAGTTACGGAATCGGTTACGTCGTCACTACTGTGAGGGAGAGGATAGCATCCGTTTTTATCCGCTCTCGCAGCACACTTTGGGACAGGTGGAGGTGTGGGGGGAACCGCCTGTTACAGGTTTGCCGAGTTCGGTCATTGTTTGAGGATGGGGGGGTTTATCGAACAGTCGGGCAAAGTGCCTCAAACCCGCATTCTTTCGTCGGACTGTTCGATAGTCCACAGGGCAAGGGTTTCAGCCATTTTTTCGGAGGAAATTTCCCTAAAGTTTTGTCAATTTTTGCTAGTGTTCGCAAATGGGGTCTAGACATCAGGCAGGGCAAGGGGTTAAAATGGGGGGG # Right flank : CCCCAGTAGGTACCGCTACGAGAGCATAGTGCTCCTTGACCGTGTAGGTCATCTGCGTCATTTCTTCAGCAGTTGCGGCACTGCCTTCAACGGGTGCAGTGGAGCCCACGAGCTTTTTCCACATATTGCTATCGATGGTGTTTTTTTCTTCATCGTAGCTGTTAGTGATGAGCTCTAGGACTTCATGGAGCTTTAGAGGTTTTTGTTTCAGCCCTTTCTTTTGGCTGACGTCAGCGAAGAAATCAAGTAGATCAGGATTCTTCTTCCATTCCCCAAACAGGGTGTTCCTCTTTAATGGGGGACTAAATTGAATGGAAACACTGGTTCAGGAGTTGTGGAGTCTGACCAATGTTGCAGTTCCTCTTTAATGGGGGACTAAATTGAATGGAAACCTGATCTCTATCTCTAAAAAGCACTCTTTTAGGATTAAGTTCCTCTTTAATGGGGGACTAAATTGAATGGAAACAATCCAAACTATCGCTTGGATCTCGAACACCAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCTTTAATGGGGGACTAAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 1266347-1265947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1266346 36 100.0 35 .................................... ATGGATTTTCAGAACATAGATTTTCAAAACCCTAA 1266275 36 100.0 38 .................................... CAAGTTCCGTATAAAGTACGTAAAGAGTGCTATGAGGT 1266201 36 100.0 36 .................................... TCTTTGGTGTTCGAGATCCAAGCGATAGTTTGGATT 1266129 36 100.0 38 .................................... TTAATCCTAAAAGAGTGCTTTTTAGAGATAGAGATCAG 1266055 36 100.0 37 .................................... TGCAACATTGGTCAGACTCCACAACTCCTGAACCAGT 1265982 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 100.0 37 GTTTCCATTCAATTTAGTCCCCCATTAAAGAGGAAC # Left flank : TCCGACGCTTGTTCCGAGTGTCCCCTGAATTTTGGTGAGTGGTTGTTGAGTTCCCATGTTCTCAATTGGTATCGGCTGTTTTTCTACTATAGTCTAGGGAAGGGGGGAATGTCTCAAAAAAGACGGGATTTATGAATGTTTTTTGGAGGGGCTGGATAGCTTTTTTTATAGGGGTTTGGGTGGATTAAGAGGGACTGTTTTAAATAGTTTCTTTTTTGGGGTTTGGGAGGGGTCGCTCTGGTGTGGGTCATTTGTTCGCTGTTGGGTTGCGCTTAGAATGATGTTTTGGGGGTGGGGGGAGTTACGGTTTCAGGAAGGGGGGGGGGAGAGGGTGGTTCATCTGGTGATGATTCCGTATTGTTCATGAATACCAAAACTGAGGCGTTTGAGTGCTACAGCAATGGCTGAACCACTGCCATAGTTTTGACTACTGGTGGCCATTATGAAAACAAAAATTCAATAGGGAAAAGGGGGTGAAAATAATCACCCCCTTTTCCTTT # Right flank : ACCCTGTTTGGGGAATGGAAGAAGAATCCTGATCTACTTGATTTCTTCGCTGACGTCAGCCAAAAGAAAGGGCTGAAACAAAAACCTCTAAAGCTCCATGAAGTCCTAGAGCTCATCACTAACAGCTACGATGAAGAAAAAAACACCATCGATAGCAATATGTGGAAAAAGCTCGTGGGCTCCACTGCACCCGTTGAAGGCAGTGCCGCAACTGCTGAAGAAATGACGCAGATGACCTACACGGTCAAGGAGCACTATGCTCTCGTAGCGGTACCTACTGGGGTTTCCATTCAATTTAGTCCCCCATTAAAGAGGAACTTAACTATCTCTCAGGCATATGGAATCCAATGGATTCGTTTCCATTCAATTTAGTCCCCCATTAAAGAGGAACGAGAAATTCGCAGCCACATTATCAAAACTATGCGTGTTTCCATTCAATTTAGTCCCCCATTAAAGAGGAACTTTTCGCGATCGCCCCACAGGAGGGGACTGTCCACCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTTAGTCCCCCATTAAAGAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 1360306-1358298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1360305 37 100.0 33 ..................................... ACATCGGTAGGCCGCATCCTTGCAGGAGATTTC 1360235 37 100.0 35 ..................................... GCTTAAGTATTCCTCGCAGTAGTGCGAGGTTTTAA 1360163 37 100.0 35 ..................................... ACTACTAACAAAGGACATGGCTAAACGGAAAGGCA 1360091 37 100.0 39 ..................................... AGATACGCTATATTGAGACAATAGTTTCACACTAACAAA 1360015 37 100.0 34 ..................................... GGGCTCTTTTCCGCTTTTATCGTGCTTTGTATTT 1359944 37 100.0 34 ..................................... GCGAGGAGCTTACACTTTAAAGGATTTTTGCGGA 1359873 37 100.0 36 ..................................... ACGGATAATGTTTTTTTCAGGCCTGTGAATCCTCCT 1359800 37 100.0 36 ..................................... ACTCGGGTTGATCTGGCGTGCGACGATTATACTAAT 1359727 37 100.0 37 ..................................... CCCATCATTGCATCTTGAAGGTCATCGTCCAAGTCAG 1359653 37 100.0 35 ..................................... GCCTAGCGGCAAGGCTAAAGCCTCCGATTCCGCCA 1359581 37 100.0 40 ..................................... AGAGAATAACACGAGATTAGAAGATATCATGATGCCAATT 1359504 37 100.0 36 ..................................... CAATCCCGTATATTGCAAGACATCGACAACAACTTG 1359431 37 100.0 34 ..................................... ACCCCTAACGATTTGGCAATAACGGAATCAGGGA 1359360 37 100.0 36 ..................................... GTACTCATGGTTGTCCTTATGTTTGCATAGATGGGG 1359287 37 100.0 35 ..................................... CAATTTGTACTTACATCCTGACGGCTCGGAGTACA 1359215 37 100.0 34 ..................................... ACGGTAACTCCCCCCAACTGGGTATTCAAGCCGG 1359144 37 100.0 35 ..................................... TTTTTTGGGAGTGTTGGCGGTGAAGTCTGGCAAGT 1359072 37 100.0 41 ..................................... GCCTTTTTCTGGTCGGCGAGGGCTTTAGCCTGTAACTCTGC 1358994 37 100.0 36 ..................................... TTCTGTGAGACCCGTAACCGTGACCGTGGCTGTAGC 1358921 37 100.0 42 ..................................... TTACGCGGAGGAGGACTTCCTCCCCAAGTATAAGGAGCAAAT 1358842 37 100.0 34 ..................................... GGACCAAGAGAGCGAGCGCGATCACCTTATCCAA 1358771 37 100.0 35 ..................................... GGACTGCAATCAACCCCGAAAAACCATCTCCTTTG 1358699 37 100.0 38 ..................................... AAACTTTGATCCACTTCTGGGCTTTACGTTCCCATCCC 1358624 37 100.0 39 ..................................... TCGATGTTCAATCCTGATTTTTTCTTCTTTTTCCAAAAA 1358548 37 100.0 34 ..................................... GTTCGTTCCTCGGGTGACTCCCAACGGTTGTTAT 1358477 37 100.0 36 ..................................... ACTCCCATCCAGACGTTGGTGAGGGGGTAGGGAAAG 1358404 37 100.0 33 ..................................... CTTTTATCCCTTTTGAGGATAGATTGTGTCTGC 1358334 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 28 37 100.0 36 CTTGAAATAACGTATAATGCCTATGAGGTATTGAAAC # Left flank : ATTGTGCAGCAAATTTATGGGCCGTTCCGTTTGGGGGTGCAGTCCTCGGTTAACTTGGACACCGGGCAAGAAATTAGTACAGATTTCTCTCTAGAATATAGTCGTCGCACCTATAGTTTAATGTTGCGCTATAACCCTACGTTGGCTGTGGGTTCTTTTCAGATTCGGATTGGTGACTTTAACTGGATTGGTACTCCGGATCCGTTTGGGGGGAGTCAGCGCATTCGCCCCGTGGTTAATGGCGTCACCAATTGATACTCCCCTGTTACAATTAGCGCGACGGGGTGGGTGTTTTTTTGAGGGGATCGGGGAAAATGGCTGAAACTCAAGGAGGGTCTGGGTTTGAATGGCTCTTGAGTTCAGAGACCGTCGCGCACCTTACAGGGCAAGGGTTTCAGCCTTTTCTTGTCTTTTCCCGGAGGCTGTGTTATAGTTTTGGGGTGGGTGTCGCGCAAGTCAAGCGGGAAAGTTCCACTAGGTAACGGTTTCAGAGTGCCGCT # Right flank : ATAATTTCTAATACATATCTTTTTCTCGCAACATTTTTGCTTGAAATAACGTATCGTCTGTGTCAACTCAAAACTTTTTCAAGGCTAGACCATAGTCTACTTTGGCATTATGTCGAGGATCAACGGGGATGTGGGGGACGATTTGGACTTGCTGGAAATGCGCCCAGTCCAAACGGGCGAGGAAGGGGCGCAGGGGTGAGTAAGGGGTGAGTAAGGGGTGAGGGGGCCAGTCTGAGGACTGGTGGCGGGAAATAATACCGAAGCGGGGGAAAAAGGACAATAACAGTCGCCAGAGGAAAGACTTTAAACCCCAACCCTTGGGGCTTAACTCTAACACTAACACCCGTTGCCCCCGACGGGAGAGCAGGAAGGAACGCACCACAGCCGGACATTCCGCCAAAACCCCCGCCACCCCTAGGGGATAGAGAATGCCCTGTTCATCTGCCACACAGCCTACACAGCGCCCCAATAACCATAACTGCCCCTCGTTGTCCCGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATAACGTATAATGCCTATGAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 7 1630783-1632941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1630783 37 100.0 37 ..................................... CTAACAATAAATTGGCCAACCTTTCTCGCTGCTCGCG 1630857 37 100.0 37 ..................................... ACAACATCGCAACCGACATAGGATGGGGAAGCGCGAA 1630931 37 100.0 43 ..................................... AAGCATCTGACCAAGGGGATGGGTAAGGAAGGTAAGGCTGCGA 1631011 37 100.0 36 ..................................... TGGCAATATTGACATTTCAAAAGCAAAAGAAGCAGC 1631084 37 100.0 36 ..................................... CGGCAACTCGTGGAGGAGGGGGAACACTCCCGAATT 1631157 37 100.0 35 ..................................... CTCCGAAAGCTGTATCTGTGCCTGTGCCGCCGTAA 1631229 37 100.0 34 ..................................... ACAGAATTGGTGAGGAATCGTAGCTCATGGTCTG 1631300 37 100.0 35 ..................................... AGAAGTAACTGATTTTTTAGAAGAAGTAAAACTAA 1631372 37 100.0 32 ..................................... ACACTGAGGGATGGCATGGATGCAGCGAAAGC 1631441 37 100.0 36 ..................................... AATTATTTGGCTTCCTCCTAAGTCTAAAAAGCTTAG 1631514 37 100.0 34 ..................................... ATCAGCGAGGTTAACCACCGCTATGAGGAGCGGG 1631585 37 100.0 35 ..................................... AAAAACGTTTAAGGAGTCAATTTCAACCCTATCTA 1631657 37 100.0 37 ..................................... CCTGTATCGTGACGAATACTACGACCCCGACAGCCTT 1631731 37 100.0 35 ..................................... TGTTAGGGGGTGGGTGGGTGAAGTATCAGGTAAAT 1631803 37 100.0 34 ..................................... GCACAGATACGGAGCGACTGCCGCTCTGTATTGG 1631874 37 100.0 36 ..................................... CCTTTATCGTATACCCGGTGGCGGTATACTGCCCCA 1631947 37 100.0 35 ..................................... GTAGCCATTGACTCTATCCCCTAGGCTAACTTCCA 1632019 37 100.0 31 ..................................... TTGAAAATTTTTCGGATTTACCGTAACCACT 1632087 37 100.0 34 ..................................... GAAAGAGTAGGGAAAAGCTTCCGCGAGAATGTGA 1632158 37 100.0 36 ..................................... TGGTGATTTGCATGATATTTTTGAGATTCTTATTGA 1632231 37 100.0 41 ..................................... GAGCCTCCCGTAAGCGTTCCAGACCCGTGGGCGGAACACTT 1632309 37 100.0 35 ..................................... GCCCGTAAGCCTCGGCTTTGGTCACAATTTGGTTA 1632381 37 100.0 45 ..................................... GTCAAATTCTAACCACCGCTCAATTTCCTCTTCGGAGAGGTGTTC 1632463 37 100.0 33 ..................................... TAGAATGCTGTATTCATGCAGCATTACGGCTAA 1632533 37 100.0 39 ..................................... TGAGCTATTTTAGTGAGTTGCTTGGAGTCGCGCCATACA 1632609 37 100.0 41 ..................................... GATTTACGGCTTGAGATGGCACGGGCAAGGGAACGGGAGAG 1632687 37 100.0 34 ..................................... TCAATGATCCCGGTGAAGTCCTCGGGGACTTCAC 1632758 37 100.0 33 ..................................... CTTGGAGGCCGGCGGCGATTGAGTCTCGCCCGT 1632828 37 100.0 40 ..................................... CACCCTCGCTTGCACCACCTTCTCATCCTTCACGGCGGAA 1632905 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 30 37 100.0 36 CTTGAAATGAGCTATAATGCCTATGAGGTATTGAAAC # Left flank : ACGGCCGTAGTAGGGGAAGATCGGGTGAGGATTGAGATTGCCGACAACGGCCCCGGAATGTCTGAGGAGGTACGGGGGAAACTGTTTGATCCCTTTTTTACCACGAAACCCATCGGTAAAGGGACGGGTTTAGGGATGTCGATTAGTTATTCTATCATTGTGGAACGCCACCAAGGCACTATTACCTGTGATTCTCGACTGGGAGAGGGGACAAGGTTTTGTCTGGAAATCCCCCTGCGGCAGGTGAGGGGGTAGGGATTGATTGCTGTGATTTGCGCGACGGGGTGGGTGTTTTTTTGACGGCATTCGGGAAAATGGCTGAAACTCAAAGAGGGTCTGGGTTTGAATGGCTTTGTCATTCGGAGACTGTCGCGCACCTTACAGGGCAAGGGTTTCAGCCTTTTCTTGTCTTTTCCCGGAGGCTGTGTTATAGTTTTGGGGTGGGTGTCGCGCAGGTCGGGCAGGAAAGTCCCACGGGGTCACGGCTTCAGAGTGCCGCT # Right flank : CTCTAACCTCAAACAACCTCGGTTTTCCCATTCCCTATTAACGATTAGACATCTCCCCTAATTAGACTGAAACGCCTATGCTGCCATTCCGAAAAGGGGGTTTTAGGAGATGTCTACTACCTAGGATCTGCTGAATATCCCTCTAAGCGCTGTAATATGGCTTTTATCGACTTGGAAGCGAGAAAGTGCAAGGTTTTAGGGACAAAGAATCAAAAAGGCTTGCCTTTTTCTGACTCCCCTCTGTTCCCTGTTCCCTTGACTTCTCACTTTGAGTCTTAACTTGTCAAGATTGCCAATTGCCGAACAAACCTACTCATCCGGCTCAATCGTACTGGTTAAGCCATGATTTTTAAGCGTTTCACAATAGAACTCCGCGTGTTCTAAAGCACAAGTAATGACCAAAGCTAAACCATTCGTATGGGCTTCCATCATAATACTAACCGCTTGAGGTTGAGTGAGTCCGGCTACCGTACTCATCAAAGTTTGCACCACATATTCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATGAGCTATAATGCCTATGAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 8 2445775-2442370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 2445774 37 100.0 35 ..................................... CTGAAATATTTAGAGCCATGAAAAATAACCTCTAG 2445702 37 100.0 35 ..................................... GGCAAATCTTCCTACCAACTCCAACAAACTTTAAA 2445630 37 100.0 34 ..................................... GGCCAGTGGAGGGCTTTCTGAACTGTCTGGATTT 2445559 37 100.0 40 ..................................... CTCACAGCCGAGATAGGCTGGAGAAGCGCGAAGACTACCA 2445482 37 100.0 34 ..................................... TCACCTCCTCTATCTTCTCGTAGCAATACTCAAC 2445411 37 100.0 33 ..................................... TTGCTCATTACCCCGACGACGGCGGCTGACCTC 2445341 37 100.0 36 ..................................... TGAGCTTGAGCGGGATTTTGTAACAATAGATTTATA 2445268 37 100.0 35 ..................................... GAAGGTCTTGCCGACCAACTTACAGACCTCGGATT 2445196 37 100.0 46 ..................................... TTGCAGGTGCCTAAATCCTCCATCAGTTCACTTACCGATGCTTTAG 2445113 37 100.0 34 ..................................... TTGCAGGTGCAACGGTAAGTGGTAGATAAGATTT 2445042 37 100.0 32 ..................................... ACCGTACAAGAGGGCTGCATCCTCCGGGTAAA 2444973 37 100.0 38 ..................................... CGAGGTCTTCCCACCTCCCCCCGTTGGTGTATTGGAAG 2444898 37 100.0 36 ..................................... ATATCCAAAACCGCGCCCCTCCTTACAATCCTCAAT 2444825 37 100.0 34 ..................................... ACTGATATTTGCTTGTAAAACTGCCCGCCGGGCC 2444754 37 100.0 37 ..................................... GCTTAGATATAAGCCACTGCTCCCATCGAATACTCCC 2444680 37 100.0 33 ..................................... TAACCTGAATAAAAAATCAAATAAAAATGCAAT 2444610 37 100.0 39 ..................................... TGCTGCGGGGCAAAATTTAGATGAGTATAAAAGATTAAA 2444534 37 100.0 35 ..................................... CTGCCGGGTCGCCCCCGCCCACGATTGATCTCCAA 2444462 37 100.0 38 ..................................... AGATACATCCCTTTCTGTGTAGGTGCATTGAAAATATG 2444387 37 100.0 35 ..................................... ATTCTACGGGGGAGGAAGATATATTAAACAAGATC 2444315 37 100.0 33 ..................................... CAATCAAGATGATCTAGACACTATTAACTTGAT 2444245 37 100.0 42 ..................................... TCCCGGATTTCCTCCACATCACGCCAGATAGCGTGTACTCCC 2444166 37 100.0 35 ..................................... CTATTAATTCTAGTTCCGATGCCATACCGTGTTTC 2444094 37 100.0 34 ..................................... ATTCCAAAAGGAGACGCACAATGAACGCTAAAGA 2444023 37 100.0 34 ..................................... CCATTCCCCCTCGATTTGACCACGACGGGGGAAG 2443952 37 100.0 34 ..................................... GAGAGAGCGATCGCCAACGGAAGTAATAACCAAA 2443881 37 100.0 41 ..................................... GCCGATATCTCCAGAAGCTGTAATCATAGTGTTATACAAAG 2443803 37 100.0 35 ..................................... TTTAGGCACTAGTCTAGATCCCGCTCAGTCCATTG 2443731 37 100.0 34 ..................................... CAAGAGGGCTTAGAGAGCCTCCTAGGGGCTTCTG 2443660 37 100.0 34 ..................................... CTACGAGAAACGGAAAAGCTTCTCCCAAATCGAG 2443589 37 100.0 42 ..................................... CTGAGAGTGTCTAGAGAGGGGATTTGGAGCGGTGTGCTTGAA 2443510 37 100.0 40 ..................................... GACAACACGAACCTAGAGCGCGATTTCCAGCGAATCTCGA 2443433 37 100.0 32 ..................................... GAGTCTTTGCATCGGCTCTCTCCTCGGCAAAC 2443364 37 100.0 40 ..................................... AAAAAAGTTATGGATGGCTTAAATTAGGGAGGTTATTATG 2443287 37 100.0 35 ..................................... AATAATACGTTTCTGTAAGTTGGGTTAGAACTCTT 2443215 37 100.0 45 ..................................... CATGCGGTACAAAGAACCTACCTTAAACGGGGTTGAAGGAAAAGA 2443133 37 100.0 36 ..................................... ATCGAAATCTATGGAGATGGATACGAGCAGCAGCAG 2443060 37 100.0 40 ..................................... ATACTTGGGGGGATGTTAACTACTAACAAAGGACATGAAT 2442983 37 100.0 35 ..................................... TTGACTATTTACTTTCCCAGTGGCGCGCTGCGAAT 2442911 37 100.0 36 ..................................... TGGAAGGCATAGACGAACCGAGCATAGTCGGACGGC 2442838 37 100.0 33 ..................................... CTATTTTCATATAGGCAGTCCTCCCCCCGATCC 2442768 37 100.0 36 ..................................... TCCATCCATTCCATCCATTCTCCGTTTGCCCATCGA 2442695 37 100.0 36 ..................................... TGGACAAACTCGCTCCAGAGAGCAACCCGCACTAAT 2442622 37 100.0 34 ..................................... GGGCTTGTATAAGGATGAAACTGACCACAATGCT 2442551 37 100.0 36 ..................................... TTCTTGGCCGAGCTTAAAAAAGGAGCGAAGGGCTGC 2442478 37 100.0 35 ..................................... TCCGCTCCCCTGAGCGCCCCAAATCAAACAACAGG 2442406 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 47 37 100.0 36 CTTGAAATAATGTATAATGCCTATTAGGAATTGAAAC # Left flank : GGGTTTACCTGCGATCGCCCTCCCAGTCCTGTTTGACCCCCAAGGTTTACCCGTCGGCGTTCAACTGATCGGGAAACCTGCCGATGATGGGACTATTTTGGCTGTTGCCGCTCAATTAGAACAGCGTCAACCTTGGATTCAAAACCGCCCTGTGACGGGTTCCTAAGTTCGCTAGGGCTTAGGGAGTCGGGAAAAATAATCAATTCTCCCCTGCTCCCCTGCTCCCCTGCTCCCCGTTCCCCGTTCCCCGTTCCCCGTTCCCTATTACAATTTAGCGCGACGGGGTGGGTGTTTTTTTTGCAGGATCTGGAAAAATGGCTGAAACTCAAAGAGGGTCTGGGTTTCAATGGCTTTGTGTTTCGGAGACTGTCGCGCACCTTACAGGGCAAGGGTTTCAGCCGTTTCTTGTCTTTTCCGGAAGGCTGTGTTATAGTTTGAGGGTGGGTGTCGCGCAAGTCAAGCGGGAAACTCCCACAGGGTCAGGGTTTCAGAGTGCCGCT # Right flank : TTGAAACCGAGGACAGCGCAGGCTGCCCCCACTTTGGTTAAGCGTTGATACGGAGAGGGTGGGATTTGAACCCACGGTACCTTGCGGTACACTCGATTTCAAGTCGAGCGCAATCGACCACTCTGCCACCTCTCCAAGGGGTTTTTCCCCGATGGCTTTCCTATAATAGCAAGCTTTTGCCGGAGTTGTGTAGGATCTGGGCGTTTTTTTTGGGAATAGGCAAGAGAGGGGAATAGTCGTGTGACACGGGCATTGCGCGACTCTGCCGCTTGGAGTGGAGGCAGAGTCTCCGAGAGGGCGTTACTTGGCTCCAGCCAAGTAACGAGGGTGACGATTACCTATTCCCTATTCCCCGTTTCCCACCCGGAGCAGAGTTATATTGCTACGCAACGCTTCGCGAACAGCAGACCCTAATTATTGTAGATATGAACATCCCGTTGTGGGAACGGAATATTAATTCCTTCTGCATCAAAGCGGCGTTTCATAGCTTCTTGTAAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATAATGTATAATGCCTATTAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 9 2630653-2629218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 2630652 37 100.0 34 ..................................... TCAGTGTCAGATTGATAAGCTCCAAAAGTTGGCG 2630581 37 100.0 50 ..................................... ATGGGGAACGGAAAAGAAGGCGGGAGTTAGTGGCCACTCAAGAAGGTTGG 2630494 37 100.0 34 ..................................... CTCGAATTTTGTGATCTCCCGAATTCAGTGATTC 2630423 37 100.0 36 ..................................... ACTCGGCTATTCCCGCCCCTCACCTTCGCTAGTTCC 2630350 37 100.0 36 ..................................... CGGTCAGTGGTGGTATGCCTCGGATACGGGAGACTA 2630277 37 100.0 40 ..................................... ATTCATTCCCCACCCCCCAGCAACTGCTTGAGTGCCTCCC 2630200 37 100.0 37 ..................................... GACAAGCTGATCCCGCTCCCGGGCGGCTGTAAGCAGA 2630126 37 100.0 35 ..................................... TCTGCCCAATGGAGGGCGGGATGGTTGCAGTCATA 2630054 37 100.0 35 ..................................... TCTCTGCTTTATTAACGGCGTCCTCTTCAGTCATC 2629982 37 100.0 38 ..................................... TTTTTACCGCAGTAGTTGCGGTAGTTACCCTCATCCCA 2629907 37 100.0 42 ..................................... GTGCGTGACGGGGCTTCTAAGAACTATCCAAAAGATTCAGAA 2629828 37 100.0 38 ..................................... AACGGTATTTTTTACCATCAATTCAGCAACACTATAGG 2629753 37 100.0 34 ..................................... CGGCACTTGTCCGCCCCTGATGCCCAGAAATGGC 2629682 37 100.0 34 ..................................... ATTATATAGAGCAATGAACGCTAATTCTAAGAAA 2629611 37 100.0 34 ..................................... TTTTATAAATTTCCTAAAACCCCCGCCATCATTA 2629540 37 100.0 37 ..................................... AGCTTGTTGCCCCATTTCTTCGGGGCTATACAAACCC 2629466 37 100.0 34 ..................................... AACATCAAAACCTAGGTAATTCTCACCATAGACG 2629395 37 100.0 33 ..................................... TGCACGTTGGCAGGTACTTGCCCGCCGCCAGCC 2629325 37 100.0 34 ..................................... ACACAGCTTTCCTCCGTGGAAATCAGTTTCAATT 2629254 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 20 37 100.0 37 CTTGAAATCACCTATAATGCCTATGAGGTATTGAAAC # Left flank : GGGGAGTTGAGCCACGAGGAAACGCCGGATTGAGATAAGGTGGCTCTATCCCACACCCCCCAATCTTGACAAGTTAAGGCTCTAAGTTATAAGTCAAGGCATTGGGAGTCGGGAAAATGCGGTTGTGTCCAAAATTGAAGACCCTATAAATAGTGTCGCCCAATTTGTTGGACGCTATATCTGGGGCTTGACAAAATGCACACAAGCTTAACAAGTTAAGGTTGCACGCCCCCCCATTGCGTTTTGCCTTGCTCCTCTCTGGGCTTTCTGGAATAGCGCGACGGGGTGGCTGTTTTTTTCCCTTCAGGTGAGGATGGCTGGAAAGGTAGGGCTGGACTGGGTTTGAAGGCAGTTCTGGGTCAGAGGGTGTCGCGCACCTTACGGAGTAAGGGTTTCAGCGATTTGTTGTGTTTTCGGGGAGGCTGTGTTATAGTTTATCTGTGGGTGTCGCGCAAATCAAGCGGGAAATCTACACAGGATAAGGTTTTCGGGCTGCCGCT # Right flank : ACTGACCTCCTCACTGAGATCCATTGCCATTCTGTCTTGAAATGAGCTATAATGTTTAGCCTAAATGTCGCAATTTATCTCACTGTTAAAACGCAGCTTAACAGTGAGATAAATTGCGACCAACTGATGAGGAAGGTATTAGAATCCTGTCAGCCAATACGGCGGGACACGCAGAATTTAAAGCTTGTGGAGAGGGCGTAAGACTCGAAGCGTAAAAGTAGAAATACTGGTGCTAGAAAGCGGCGCTCAATTAAACAAGAAACTCCGGCCACAGCCTAGCTTGGCGGTGAGAGTGTCAATTACTGATAATGGACAACTGCTATGAGTCAAATTCTATCTTTAGAAGAATCAACTACTGTTATTTATCCCAGTGAGGACGGTGAGCCTTTGGCGGAGACATACGATCATATGTATGCAATTTTGATGACCCTAGAAGTGTTACGACAATACCTGAGTGGTCGTCAAGCAACGGTATTAGCAGACCAATTTCTTTACTATTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATCACCTATAATGCCTATGAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 10 2662623-2659540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2662622 37 100.0 34 ..................................... GTGGCTGACATAGGCGATCGCAAAATCTCCCACT 2662551 37 100.0 37 ..................................... CGGTGTGAGTAGCAACAAAACTCCAAAAAGTAGTAGT 2662477 37 100.0 37 ..................................... TTGTTATTGGGAGTCCTCCGTCTGATCCTGTTCCTGT 2662403 37 100.0 36 ..................................... TTGTTACGGATAACGTTTTTTTCCGTCCTGTGAGTC 2662330 37 100.0 35 ..................................... GTTACTCTCTTCCTTCTTCTGATTCTTCTGATTCT 2662258 37 100.0 36 ..................................... CTTGGGAGCCGCGTTCGTTGTTCAAAAGACCGTTAC 2662185 37 100.0 35 ..................................... TTTCCCCCTATCCCCCTATTCACCTAGGACATCAT 2662113 37 100.0 38 ..................................... CTGCCATTCTGCCTTTAGGTGCGGTCTTTCTATCTCCC 2662038 37 100.0 34 ..................................... TACGGTTCTGTGGGATAGATGCCCCTGAATCGGA 2661967 37 100.0 36 ..................................... GGTGGTTTGATCCTCGCTTATTCTCACCCTACTCCT 2661894 37 100.0 37 ..................................... ATACAGCAACAACAACAGTAACAACAACAAAAAAATG 2661820 37 100.0 34 ..................................... ACATTACTCCTCAGAATGTGCGGAGGCTGGCTCA 2661749 37 100.0 37 ..................................... TCTGAAGTGTACGAAAATTTGGGACTTTCAGATTAGT 2661675 37 100.0 35 ..................................... GACACCAAGCCTGATCAGGAATTGGGTGGAAGGAT 2661603 37 100.0 34 ..................................... AATAACGCCGAATATCACATCGAACGAGTTATCG 2661532 37 100.0 34 ..................................... TTCAAAGATGGCGGGAGCTTTAAGGGGGTAAGGA 2661461 37 100.0 37 ..................................... GCAACGTCAGAACCATTTTTGCAAGACTGACGGACTT 2661387 37 100.0 33 ..................................... TTAGTGTTCATAATGTTCATAAGTTTGTCTAAT 2661317 37 100.0 34 ..................................... TATTTTATACTTGTGTGGCCTCACTTCCTTGTGG 2661246 37 100.0 30 ..................................... CGTCGTTAGGTGAAAAATCGTCCGGCGGAT 2661179 37 100.0 35 ..................................... TATCTCAATAAAAAATCTACTCACCTGCGATTAGC 2661107 37 100.0 38 ..................................... GCCACATATAGCGACGAGTCTTGCCCCATTTGTGGAGC 2661032 37 100.0 38 ..................................... ACGCGTTTATACATTTGGCTTCCGACTCTTACCAGGAT 2660957 37 100.0 35 ..................................... CCACATTGAGTAAATCCCTGACTAAGTGTTAGTTC 2660885 37 100.0 34 ..................................... AAGAAAAAAAAGGAGGGCTCAAAATCCAAAGACC 2660814 37 100.0 36 ..................................... GCGAACCGAACGATAAAAAAGACGGTCATGCCCTAA 2660741 37 100.0 35 ..................................... TTTATTTTTCGGTATCGCTGTTTTTCTAATCCGCG 2660669 37 100.0 36 ..................................... AGTCCGAATCTGGACATTGGACGGCGTGTTACTAAT 2660596 37 100.0 36 ..................................... AGGCTCATTTATACTGGTTGCGTCGTGCTTATGGTC 2660523 37 100.0 34 ..................................... AACTCAGGGATAGGGGTATCGACCCGGACACCAG 2660452 37 100.0 36 ..................................... CGCTCTTTTGTTTCTTCCTTTTCTGCCTCCCCCGGT 2660379 37 100.0 36 ..................................... GGATGCGATATTGCTGGAATAAGCTAGCTCCCTTTG 2660306 37 100.0 35 ..................................... AAAAGGGGATTGTATAAAATCCCTCGCCCTAAGCA 2660234 37 100.0 35 ..................................... AATGTTGGGTGAATGGTGACAAAATCTTACTCCCC 2660162 37 100.0 40 ..................................... GACTACGTTTTCAGGATTATCCGATAGGAAACCCCGTAAT 2660085 37 100.0 36 ..................................... GTGTCTTGAATCCCGGGATTAGCCAGCCCGAAACAC 2660012 37 100.0 34 ..................................... GAGGATGAACCGGGGGATGTGCTATTTACCACCA 2659941 37 100.0 37 ..................................... AATTGGTGGGCTTGCTCCCACTCCTCCGATTCCAGCT 2659867 37 100.0 37 ..................................... ATGCTCTTTTGATTGGTCAAACTCCCGTCCCTCTTGT 2659793 37 100.0 35 ..................................... CCTAAAAAAGCAAAGAAAAAGGAATTTAAGAAAGC 2659721 37 100.0 35 ..................................... ACTTTAAGCACTTTTTGGAATTTAATCGAAGCAAT 2659649 37 100.0 36 ..................................... TCTTTCATTTTGAAACCGTACCATGACGCGATTAAA 2659576 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 43 37 100.0 36 GTGAGTTAACCTTAGATCGCCGTTAGGCGTTGATCAC # Left flank : CCGAAGGTTTATTAAACCGCGTGGAGGCCGGGATCCGGTGTTTTGACCCCTGTCTGAGTTGTTCCACCCACGCGGCCGGACAAATGCCCTTGCACGTTGAATTAATTGGTGCCGATGGGGCGCTGTTAAATGAGGTTTACCGCCGTTAGGATTTTTTCCGGTGGAAGTCTTGAATTTTCTACCTCAGTTGTTCTGAACGCCACACTCTTGGAGGGTGTGGTTTTTTTTTGTTCCTGTTGGGGAAAAAATGCAAGCACCTGGTGACTGTTGGGGGAAAAAGGGGGAGAAAAAGGGCTGTAAGTGTTATTGGGTAAGGCTTAGAGGGGATTTAGTGTGGTCGGGAGGTGCTTGCAAAATCCTGAACCCTTGATGGGGGTTGGGTTTGGGCTGTTGCAATTGAGCGAAAAATGGTGTAGAATGGGTTTGATTTGGTTGGATTGCTGGGGGTGCTTGCAAAACTGTCTGAGGCGTGTTGTCCTGTAAGGGTTTTGGCGGGTGCT # Right flank : AAGCGCACTGGGCTGTATCTCACTCAAGGGGGAGTCTTGCCTAAGCCAAAAACCCTACTTTAGGGGCTTCTTGCCTAAACTGTATCGCGTTACAATACAAAATATAAATTAACGTAACTTAACATTTAGGGCAGTCATGCAGGCAACGGCAACGGCAGAAAACCTAACCCTCCCCGGGGCTTACTGGCAATGGCAGGGAGAGTCCATTTATTACGTCAAAACCGGACAAGTTAAAGGAGGACACCCTCCTCTCCTCTTGGTTCACGGATTTGGGGCATCAACAGACCACTGGCGCAAAAATTTAAGCGGACTACAAGATCATTTTGAGGTTTGGGCGATTGATTTGTTGGGCTTTGGACGTTCGAGTAAGCCCAATCGGCAATATAGCGGCGATTTATGGCGGGATCAACTGCATGATTTTATTCAAACCGTGATCGGTCAGCCTGTTATTTTAGCCGGGAACTCCCTTGGGGGCTATAGTTCCCTCTGTGTAGCCGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGTTAACCTTAGATCGCCGTTAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 11 2799208-2794307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 2799207 37 100.0 41 ..................................... CAGAATTTCGATGGTTTCTTGAATCAAACTGAGTGCGTCGC 2799129 37 100.0 34 ..................................... AAGAAGGGGAAGAAGAACCAATAACCAAAGCTTT 2799058 37 100.0 36 ..................................... TAACTGAAGGCCCTTTGGCGGTTGAAGATTATTTTC 2798985 37 100.0 34 ..................................... TTTTAGTTTTTCCATTCCCTACTTATTTTTCAGG 2798914 37 100.0 35 ..................................... TGGGTGGAGGTAAAACTCCAAAAATTAGCAGTATA 2798842 37 100.0 36 ..................................... AAGGGCCTTCTGGAGTTCGTCCATCTGTGCTTGCAT 2798769 37 100.0 35 ..................................... GCAGGTTTGTCCCTCGTCTGGGCAGAACCAAATCG 2798697 37 100.0 34 ..................................... GCCGCTTGCCCCAACCTGGACAGCATCGACCGGA 2798626 37 100.0 35 ..................................... GCAAATCTCAAGGATGCCGCGCTCTCCTCCACTTC 2798554 37 100.0 36 ..................................... CATTCTCGGATGGGCGATTGATTCTGCCCCAGAGTC 2798481 37 100.0 37 ..................................... CCTCTACTGGGGCGGCACAGAACCCGAGGCGAGGGCG 2798407 37 100.0 33 ..................................... CTTTACAGTGGGAATCCCATTTCCCCACCTCTC 2798337 37 100.0 33 ..................................... AGATATTAATACTCAAGTGGGTATTCATTCGAG 2798267 37 100.0 36 ..................................... CTGATGAGATTTGCCCCTCCGCCTGTGCGGTCTGGA 2798194 37 100.0 38 ..................................... ATAGTCCCCCGCCGCCGGGAGAATGTTTGCATCTGTGC 2798119 37 100.0 39 ..................................... CAGTGTGCCGGAGAAACGGCAGACCGGAAGAAGTCCTGA 2798043 37 100.0 33 ..................................... TTCAACGGAACAAGTAGTTGTAGATGTACTCCA 2797973 37 100.0 32 ..................................... GTGGCTGACACCACCGTATTTCGGGATGGTGA 2797904 37 100.0 37 ..................................... AAACACACAACTGTTAAGGCTTGCCAGTAAGCTTGAA 2797830 37 100.0 34 ..................................... AAGGCGATCGCAATCCCCACCACTCATCAGGGGT 2797759 37 100.0 33 ..................................... CTGAGGGGAAAGCTGAAATTGTACAATTGCCAA 2797689 37 100.0 37 ..................................... AACACTTTTCTATAAACTCCTCAAAACCCCTGCCATC 2797615 37 100.0 31 ..................................... TGACTCCATGCCTGCCAGATCCAAATCACCT 2797547 37 100.0 35 ..................................... CACTCCGGCGGGAAGTCTCTCCACGCTTATCTAAC 2797475 37 100.0 36 ..................................... CAGAAAAACCAAGGGCGTAAGAATCGCGAACGAAGC 2797402 37 100.0 40 ..................................... AGATGCTTGCTTTACCTGTGACATCGCAGGACAATTCAAA 2797325 37 100.0 34 ..................................... ATCTATCCCTCCATCCTCTCTCCCGCCCTGTGAC 2797254 37 100.0 38 ..................................... AAAGTGGTTAACAACGCGGTATCCCTCGGCTCGGAGGG 2797179 37 100.0 35 ..................................... AATGGGAATGACAATAATCGCACTTATAGCAATTG 2797107 37 100.0 32 ..................................... TACCGCTTTTATCGTGCTTTGTTTGTCTACTT 2797038 37 100.0 42 ..................................... ATCCGGATTACGGATGTCTTTAAATTTGAGGGACGAGGACAA 2796959 37 100.0 33 ..................................... GAAGACTACCCCGACCTTACCGCCACGAACATG 2796889 37 100.0 39 ..................................... ACTGGGGCATTCCTCCCCGGGTTCTCCACAGTCTCCCGG 2796813 37 100.0 37 ..................................... GTCTGCTTTGTTAGCTATTGCCTTAAGGATAAAATAA 2796739 37 100.0 35 ..................................... CGATGACTCATTCTAGGTGAATATGCCGCCAAAGT 2796667 37 100.0 36 ..................................... TTAGTACAGTGTTCGTGCTTCGGGAGGGGACTCCGG 2796594 37 100.0 37 ..................................... CTGGACAACGTGGCAATCACTCCCTTGAAACTGGCTC 2796520 37 100.0 35 ..................................... CGTTGAACGGCGGCTTCTCGCTCGTCTAATGTGCC 2796448 37 100.0 34 ..................................... AACAGTTTTGAAAAAACCCCTAGGGCTTGCTGTT 2796377 37 100.0 39 ..................................... GAACTTCTCACCGGGAAAATTTCCCTCAGTGAGATGAGG 2796301 37 100.0 35 ..................................... TAAAGAATTGCAATCGTCCGCCGATTTCAGCCCGA 2796229 37 100.0 34 ..................................... TCCGGAGAGATTGCGGGATATCCTTATGAGGCTA 2796158 37 100.0 33 ..................................... GCGGTCAATGAGCGCGTTTATAAGAAGCGTTCT 2796088 37 100.0 34 ..................................... TACCTATTTTGGAGCTAGCACTAAAACGGGTATG 2796017 37 100.0 31 ..................................... CCATTTCCATCAGCGATGATAACGTGGGTGA 2795949 37 100.0 41 ..................................... AGGGTGTACCGCAACATATCCGCACCAGAACGTCCCCCGAG 2795871 37 100.0 33 ..................................... ATTGAAATCATCTACTCCCGCCTAGCGAATACT 2795801 37 100.0 33 ..................................... AACAATTAACGGGCCTGCTACCCAATCCTCGGA 2795731 37 100.0 36 ..................................... CTTTTAACTCCCACTTAAGTTCATCTGCGAGTAAAA 2795658 37 100.0 41 ..................................... GATTACTTAATTGAATCGCTTGATTCAAATCGTCATACAAA 2795580 37 100.0 37 ..................................... GGATCTAAATTTCCGACCATACACTCAATTCTGTAAG 2795506 37 100.0 35 ..................................... AGGAGCCATCCTGCAATTGAAAGTAACAGACTGCT 2795434 37 100.0 34 ..................................... TGTATTTTCTGCTTCCCAATTGCCCCCTATATAT 2795363 37 100.0 34 ..................................... AGGGGGATAGTTGCAGGTGCGGTCAGGGCAAACT 2795292 37 100.0 34 ..................................... CAAAAGGATGAACTCCAGCGCGACCTGGACAGGC 2795221 37 100.0 32 ..................................... GCATACAGAGATCGCCACATAGGCGATGGCGT 2795152 37 100.0 35 ..................................... TTGCATATGAGCGAAAGCTGGCACACCCATGCAGG 2795080 37 100.0 35 ..................................... TGATAAGGCTTGCCGTTGTCCTCTTTTGCCTTGGT 2795008 37 100.0 42 ..................................... CTTCAGAATTTCCAGATCCCGCTTTTGCAAACGGTTGCGGAA 2794929 37 100.0 47 ..................................... ATCATTGAGTACGAGACTCTTGGCTCTGACGAACTCTCTAAATCTTT 2794845 37 97.3 35 .........G........................... ATAATGGAATTCGCTCAAGAATTCCTCTTGATCCC 2794773 37 97.3 34 .........G........................... CTATTCTTTCTCCTGCTGTTGCTGTAAATATTGG 2794702 37 97.3 33 .........G........................... CCCAATGGGGGAAATAGAAGCCTATAGCCCCTT 2794632 37 97.3 34 .........G........................... CCAACTCCCGGTTCGTCCGGCTGCGCCGAACGCA 2794561 37 97.3 34 .........G........................... GTGAGGACGAGGAAGTTGTCCTGGATTGTTTCTC 2794490 37 97.3 35 .........G........................... ATAACATCACACCCAATATAGCTGGGAGACGCCCG 2794418 37 97.3 38 .........G........................... GCGCGTCGTGTCTGCGTTTCAGGTCTTGCCGTACTCTT 2794343 37 97.3 0 .........G........................... | ========== ====== ====== ====== ===================================== =============================================== ================== 68 37 99.7 36 CTTGAAATGATCTATAATGCCTATTAGGTATTGAAAC # Left flank : TCTACGGAGTCGCCCCCGGTGCCGTCTCCTCCAGTGACTCCCCCCCCTGTTGCGCCTACGGTGTCGGAGGAGGAGGAGGAGAGTCTGGCGAAGTCGGAGGAAAAAGCAGCTTCTGATGCGGAGTCTAGTCTCCCGGAGGTGGATAGCGCTCCGGTGTTGCCGAGTGATCCTCTGGGGGAGTTGGAGGAGCACCAAGGCTGACCAGTTAAGGGGGAACGTTAGACGTTAAGAGCATCGGGAGGGGGGAATTTTCAAGGATTGTTTCCCTGAATTTGCGCGACGGGGTGGGTGTTTTTTTTGCGCTTGGGCAACTGTGGGCTGAAAGCGTTGGGGGGATTGGGTTAGAGGGGGTTTGTTCAGTTGAAGGTGTCGCGCACCTTACAGGGCAAGGGTTTCAGGGATTTGTTGCTTTTTTGGGAGGACGGTGTTATATTATTTTTGTGGGTGTCGCGCAAGTGAGGCGGGAAAGTCCCACAAGGTCACGGTTTCGGAGTGCCGCT # Right flank : TTGAAACTTGAAACTTAAAACAGATCACTTTCCCCCTCATTACTTGGCTCTGCCAAGTAACGCCATCTTGAAGGCTCTGCCTCCATTCCAAGCAGCAGAGCCACGCAATACCCGCGTCACGGCAAAGCCATGACACGAGACGGATGACTCATCACGATTCCCACCTATTGCAAGAGTGCCTCTTCTCGACACCCCTATTGCTGCTTCGCTTAATCTCGCTTTAACATGGCCACTAAAGTACGGTGTGCATCGTCTGAATCAGTTAGAGTGTGATCAAAGGGGATGCGTAAGGGAACAATTTCCCCCTCAATGGAAGCGTTTAAATTCATCCCCTCAGCATCAATGGAGAGCATTTCTGCGGTTTCTGTGTTGGGTGCATTGCCGAAAGTTTGAGCATAAAAGCGCACCGCATCCCCATGATCTTTGTTCATGTGTTTACAAATGCGATCGCTTACTGCCGGAGTTAATGGATCAGCCATAATAATCGTCTTTGTTTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATGATCTATAATGCCTATTAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 12 2848622-2850758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2848622 37 100.0 36 ..................................... TGGGAAAACATAAAGCCCAAAACAAAAATAAACAAA 2848695 37 100.0 37 ..................................... CGGAGTGGAAAATATACCAAGTCAGGTTTCACTCCGT 2848769 37 100.0 35 ..................................... GACAAACACCCAGCCTGAGCAAGCCCAACTTGTTC 2848841 37 100.0 36 ..................................... TTGATTAGCTCGGCGAGTAGTAAAAGCGGGTTGCCC 2848914 37 100.0 34 ..................................... CCTGTATGGCTGCATTAGCTGCCTGAATCTCCCC 2848985 37 100.0 35 ..................................... TGGAAAGTCGCAATAACAAGCGCCCTATTATGTCA 2849057 37 100.0 34 ..................................... AGAACCGGGCATTGGTGGCACGATTCAAGAGCGT 2849128 37 100.0 36 ..................................... AGCATTGGAAATGCTCTGGTCAGCCCTTCGATTGCA 2849201 37 100.0 34 ..................................... TTGAGCCTGCCCTGACCCCATTAATCAAAGAAGC 2849272 37 100.0 37 ..................................... AGCCAAACAACTCCACCATCCGAAGGGCGAGGGCTTT 2849346 37 100.0 36 ..................................... GACATAGGAAGGAGAGGCACGGAGCGATCCAAACTT 2849419 37 100.0 38 ..................................... CGAATGTTTTGGTTTCTTCCAAAGTAGAGTTTAAGGCA 2849494 37 100.0 35 ..................................... GAAAATCCCACCAAAAGGAGAAGAGACAAAGCAGA 2849566 37 100.0 34 ..................................... GCCAAATAAAATCAATCGACAAATCAGCATAGGC 2849637 37 100.0 35 ..................................... GCCTTGAGGATCAGACCCATCTCATCAATTAAAAT 2849709 37 100.0 37 ..................................... CCTGCCCCCCTTGCTACAAGTTCCCGTCCCCGGGCCT 2849783 37 100.0 35 ..................................... CCCGGGCCTGAGCAGGTGTTTGGAGTCGATGCTGA 2849855 37 100.0 35 ..................................... GTTCGGATGGTCGACCCTCGGAAAAGGTTACAGGG 2849927 37 100.0 32 ..................................... CCGTAAATCCCGTGATGGTAGTTATACCGTTA 2849996 37 100.0 40 ..................................... TTTGGCGGAAGTTCACAGAAACCAGAAAATTGGTGTAATT 2850073 37 100.0 35 ..................................... TTTAGGTTGATTGCAGACATCAAATCATCGTAAAT 2850145 37 100.0 34 ..................................... CCATCTCTGTTGCCTCTCGGTGACGTAATAGTGG 2850216 37 100.0 36 ..................................... ATAAAATCCAAACAAAGAAATCTGTAAAAGTTTTTT 2850289 37 100.0 36 ..................................... GTGAACCAACAAAATACCACCTCCCTCCGAAGTTTA 2850362 37 100.0 35 ..................................... TTAATGTGATGTAAGGAAGAACGGATATAGATCTA 2850434 37 100.0 36 ..................................... TCAATTTCAAGTCGTCGGCAGGCAGTCCTAACTGAT 2850507 37 100.0 34 ..................................... TCAAGCAAGCGTTAGAGTTTGCTTGGACTAAAGC 2850578 37 100.0 35 ..................................... TGAAGTCCCTTTTTTTAGTGGGTTTAATGCTGCAA 2850650 37 100.0 35 ..................................... ATTTGCGGAACTTCTCCAACAAAAACTCTACAAAA 2850722 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 30 37 100.0 35 GCTTCAATGGAGCCACTCATTTAGAGGGAATTAAAAC # Left flank : ACGCACCAAGGACTGAATATTTAACTGGTCCGGGCCGATGCCATCCATCGGGGAAATAACCCCGCCCAAGACATGGTACAGGCCGTTATACTCCCGGGTTTTTTCCAAAGCAATAACATCCCGACTATCCGCCACGACGCAAACCGTCGTTTTATCCCGATTGGGATGGCGACAAATGGGACAAACTGGCTCCGCCGAGAGATGAAAACAGACTTGACACAAACCGACACGCTTTTTCGCTTCCACTAAAGCCTGAGCGAGGGCTTCCACTTCATCCTCTGGGCGTTTGAGGATATGTAACGCTAACCGTTGGGCTGTTTTGGGGCCAACACCGGGTAAGCGTTGTAATTGTTCAATCAGACGGGCAAGGGGGGCTGTGTAAACCGTGACGAAACCTCCTTGTTATGATGGAGTCACTCTAGAGAGGAGTACAATCCTATTGTACCTGTTCATGGTTTCTATGGAAAAGGGAACGGGGAGTCGGGGGACAGCCGGGATGT # Right flank : CTGCGGCAGTCTGAAAGTCCTGATACATAAGGTTTTCAAGGTGCAGTTGCGCGACACTCACCCAAAATAGGCGATACAAGATCATCATACCCGATTTTCCTCCTGATGAAAACCCCCGAAACCCAGACCCCATAAGACCTTGAGAAACTGCGCGACAGTCCCCCAGCACCGAAAACGCTCAAACCCAGACCCCATAAGACCTTGCCCCCCTTTTCTGCCCCCAGCCAAAAAAAACACCCACCCCGTCGCGCAAATTCCCCCTAATCCGGCCTGAATGCGGGAGTCGGGAATCGGGAATCGGGAGTCGGGAATCGGGAATCGGGAGTCGGGAATCGGGAGTCGGGAATCGGGAGTCCGGGAACTCTCCCCCCCTGTTCCCTGTTCCCTGTTCCCTGAAGAGAGGGAATCGTTGTAGGGGCGCAATGCTTGCGCCCTAGGGAGTCGGGAGTCGGGAGTCCGGGAACTCTCCCCCCTGTTCCCTGTTCCCTGAAGAGAGGGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGAGCCACTCATTTAGAGGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.40,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 13 3450067-3452557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3450067 37 100.0 36 ..................................... TTTGAGCAAATTTTTTATCCGATTGAGCAAGCTGCT 3450140 37 100.0 37 ..................................... CGGCTGGTCGTGAGGATTGGTTGTTGTTGCTGGTCAA 3450214 37 100.0 32 ..................................... ACATGGGGACTCAAAGGACATCAAAAACAACA 3450283 37 100.0 35 ..................................... ACTTTAAGCGACGGTATCAAAATCAGTGCCTACCT 3450355 37 100.0 33 ..................................... GCAAAACTCTGGGTCGGTTTCGGAGATTGTAAC 3450425 37 100.0 36 ..................................... GAGTTGAAAATACAAAGGGGCGTTACTGGTGCATCT 3450498 37 100.0 36 ..................................... TTCCCTTTAAGGATATCCATTTAAAGGAAATCCAAT 3450571 37 100.0 36 ..................................... AAAATTTGAAATGGCTCGAAAATTCCCCTACGAAGA 3450644 37 100.0 33 ..................................... GAGTGCAGCCTTAACCTGTGCATTCCTTGCCGC 3450714 37 100.0 35 ..................................... AACAAATTTTGTGGCAATAGTGCAACAATTGCAAC 3450786 37 100.0 36 ..................................... TTGAAACTGTGTTTGAATTACAATCCAATCCGTCCC 3450859 37 100.0 32 ..................................... GTATGTTTTCATTCTTCCTTCTTCCTTGCTTC 3450928 37 100.0 32 ..................................... ATTGATCCTGACTACGATCTGACCATCTCCAA 3450997 37 100.0 34 ..................................... GGTGTATTCGGGCAAGAGATCATCTTCTAGCTGC 3451068 37 100.0 34 ..................................... AATCAATATGATTGGATCATTTATTCGTCCGACG 3451139 37 100.0 36 ..................................... CGGCGAGGTTGGCAGCGTTGGCATCGATGGCGGATT 3451212 37 100.0 36 ..................................... TGAGACATAGACAAACCCTCCGCAAGAGAGGTTGCG 3451285 37 100.0 38 ..................................... TTCTCTACCGAATACCTTGTTTTCCCATACTGGTTCCC 3451360 37 100.0 36 ..................................... TCCTATGTCGGGCAGCCCTGGCGGATTCCCTTTGGA 3451433 37 100.0 34 ..................................... CAGTCCCTGAATATCCTGTGCCGGGTGAATTCAG 3451504 37 100.0 35 ..................................... GAGGAGGTGGAAAATCTCCTGCTCCTCAGATATCA 3451576 37 100.0 35 ..................................... CGGAAAATCCCCGAACGGACTCGCTCAGTTGTACC 3451648 37 100.0 32 ..................................... ACTTTCTTGAAAGCCATAACAGATTTAACAGA 3451717 37 100.0 35 ..................................... CTATGGCCGCCAGTGTTGGCAATTTCGCCACCGTA 3451789 37 100.0 36 ..................................... CAAACGCTAGAGCCACACCGATTCTAAAGGTTTCAA 3451862 37 100.0 37 ..................................... ATTGAATAATAAATACTGCAATAATCATCCCTGTTGA 3451936 37 100.0 33 ..................................... CTGACCAAACACACCGAAACTCCCATCGTAAGA 3452006 37 100.0 35 ..................................... GCCGTCCATTTTCTCTCGTTAGTACCCCATTACTC 3452078 37 100.0 36 ..................................... TCGTAATTTCATGCTGCATAAAATCATAAAGAGTGC 3452151 37 100.0 39 ..................................... GCATCAAAGATTCCCAAAATTTGCATGGGTTCCAAAATC 3452227 37 100.0 34 ..................................... CAGTTACAAGGGCGATCGCTTCCGGTGTCAAAGA 3452298 37 100.0 43 ..................................... GGGGGGCGGGACTCCTCGGCCGAGCATATACACCAAGAATCGG 3452378 37 100.0 35 ..................................... CTTGGGAAACACTGGCCACAGACTCACCCTGTATG 3452450 37 100.0 34 ..................................... GCAAAACTCCAAAACAGGAATTTCTGTAAATTTA 3452521 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 35 37 100.0 35 CTTGAAATGAGCTATAATGCCTATGAGGTATTGAAAC # Left flank : GGAAATGTTCACCTTTACAGCCGGGGAAGCGTGGATGATTCGCAATGGGGAATTAGCGGAACCCGTGCGGGATGTTACGCTTTCGGGCAATGTGTTTAAAACCTTGGCTAATATTGAGGCCATTGGGGATGATTTTTATTGGGATGAGTCGGGAGGATGTGGCAAAGGGGGACAAAGTGGTTTAGCGGTAGGCTGTGGGGGGCCAAGTTTACGGATTAGAAATGTGGTCGTGGGGGGAGAAGCGGATTGAGTTGTTTGTCTCTCCCGGGATTTTGCGCGACGGGGTAGGTGTTTTTGAGAGGGGGTGTTTGAAAAGGGCTGTAACTCAAGGTGGCTCTGGTTTTGCTGTGTGTTCAGGGTTGGAGGGTGTCGCGCACCTTACAGGGCAAGGGTTTCAGCCGTTTCTTGTCTTTTTCCGTTGGCTGTGTTATAGTTTTTTTGTGGGTGTCGCGCAAGTGAGGCGGGAAAGTCCCACAAGGTCACGGTTTCAGAGTGCCGCT # Right flank : CCCATCACTCACCCCCGCCTCCATTCCAAGCGGCAGAGCCGCGCAATCCCCGCGTCACGGCAGAGCCATGACACGAGAGGGAGACAGGAGAAAGGTCTACTGCTCCATCGGTTCAATGCCCAAAGAAACCCGATCTCCTCCTATAGTTTTCATCGCGGCTAACCATTGAATCACCACCTCATAGGGAACATCTGGTTCTGCCACCAAAACAACAACTCCGTCGGGAACTGTAGCTAAATAGTTGGGAATTTGGGTCAAGATTTGTTCTTGAGTAAAAGGCTCTTCATTGACAATCCCTTGCTGAGTTGCTGTCAGACGCACCAGAAAAAAATCCCGCTCTAACTGATCAGATACTTCCCCATCTTCCGGCCCAGGTAGTTGTACTTCTACCCCATCGGGTGCGGTGGTGAGCAACATGGAAATCAAGACAAAAAAGGCTAAAACCGCCATCATCACATTGAGCATAGGGATGAGGTCAATTCTAGGAATAGGGGCGAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATGAGCTATAATGCCTATGAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 14 3909842-3907884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3909841 36 100.0 40 .................................... AGAGGTTGAATGGAACAATGAAATTATCGGGAATAACATC 3909765 36 100.0 37 .................................... TTTAACAAGAAAGAGCTTGCAGGACAAAAGATCACAG 3909692 36 100.0 37 .................................... TCGGGCAAGAGATTCTAGCCGAATCGGAAGATGAGAT 3909619 36 100.0 40 .................................... CAAATACGATCGCCTTCAAGTTGTCTAGCTCTCTCGGCAC 3909543 36 100.0 40 .................................... AAAGCTTGATCGGCTTGTATCAGCAAAAGGTGATCGTTAG 3909467 36 100.0 36 .................................... TTGTCAATTAAATCTTTACAAGACTACTTTAAAGAT 3909395 36 100.0 41 .................................... CTTCACGAGGCGTACAACGCCCATGTGAAGATGTTTGGGTT 3909318 36 100.0 39 .................................... TGGGCATGGGGTAGTGTAGTTGTTCGCGGACAGAAGTGG 3909243 36 100.0 40 .................................... CTTTCTTGAAATAGAGGGTAATGGAATAAGAGCGAAGATA 3909167 36 100.0 36 .................................... TCCCTCCCAAAGAAATTAGAAGTAATGTGGATCAAA 3909095 36 100.0 42 .................................... GGTATAAATGAAGAACCTTGGCTTTAACAATATGTCACAAAA 3909017 36 100.0 39 .................................... TTAACCCCAGAGGAAGTCTCTGATGTTACTGACTTAGTA 3908942 36 100.0 35 .................................... AAAAAAGCAATTTCAACTTCCAGTCGGCAATCCAA 3908871 36 100.0 40 .................................... AAGTTGTTTGGCAGTAATCGCAACATCAGAACCGTTTTTA 3908795 36 100.0 39 .................................... CCCTTGAGAATGGCAAGATTCACCTACGCAACTATCGGG 3908720 36 100.0 39 .................................... GGGCGCGCCTCAGCAGGTTCTCTCTATTGTAGACCGTGA 3908645 36 100.0 36 .................................... CCTAAAAATAAGGGTCTATTTGAGGGGAATTTCCTG 3908573 36 100.0 35 .................................... TACCCGAATAGGCGTACTAACCCCAGCTTGCCTGA 3908502 36 100.0 36 .................................... TATAAAGTTGTAACAGATATGAAAGATGGCCCCGTG 3908430 36 100.0 37 .................................... GGGAGAACCAAGCTGTATTCTTTACTTACGGAGAACT 3908357 36 100.0 36 .................................... GATCGAGTGGATCGTTTCGGCATATTCCAGCGTGTT 3908285 36 100.0 39 .................................... TAGTACGAGAAATACTCGAAACGCAAGCCCCGCTGATGA 3908210 36 100.0 37 .................................... CGTTCAAGAAAAAGGATGTAGTGAAATATATTGACAA 3908137 36 100.0 36 .................................... ATGATGGCAAACCATGATATGTGAGAGTATTAAGAA 3908065 36 100.0 37 .................................... CCTTTCCAAGCCTCCTAAGAACGAGCAAGGTAAAAGT 3907992 36 100.0 37 .................................... GGGAAGAAGTCTCCTAGGAATTGGGCTAAGTCCCCTT 3907919 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 27 36 100.0 38 GTTTCCATTCAATTTAGTCCCCCATTAAAGAGGAAC # Left flank : CAACCTCATTTAAAATGTGTGGCCTGATGTAAGGACTCAAGGATTCAATGGTGATGAGATCGACGGATCTACCAAAAATATCTTCTAGGAAAAAAGATAAGTGGATGAAGTTATCAAAGGTTTTTTGGTTTGGTTCAAAGGTGACTAAGATATCAACATCACTTTGGGGGTGAATTGCATGGTCGTGGACAAATGAACCCAAGATGCCACAACGTTTAACGCCAAAGTTGTGTAATGTTTGGTGATGTTCTTGAAGGAGAGCGAGGACTTGGGCTTTTGTTTGGACGGGGATTACTGACATAGGTTGAGCGGGGTAGGTCTAGTTTTTAACTAACCATTGGTGGATCTGGGTTGGGGGTGGTGCTGTGGGGATTGTAGCTAAATTTCTGAGGCTTGTCATGGATGGGGGCCTAGGGCGATCGCCCCCTCTCAACCCACCCAACCCACTACCTCAACCAAAACTGTAGGGATGTTTTTGTTGCGACTTCCCTCTAGGAAAG # Right flank : TCCCCCCATTATAACCCCTTGCCCCGCCTAATGTCTAGACCCCATTTCCGAGGCTCCCCTAAAATCACCCCTCTGTAACCCGTTGAATTTCCCATCAACACACCTCAAACCCTTACAGGACAAGAAACCGAGGCTCCCGACGAAAAATCAACGTTTCAGCCATTTTCCGGGAGCCTCGGAAAATTTGAGGAAACAGAGAACAGGAAATAGGGAGTCGGGAAAATCCCGTTGTGTCCAAAACTTCAATACCCCATAAATAGTGTTATCCCATTAATTAACCCCTATATATAGGACTTGACAAAATGCACACAATCCTAATTTGTCAAAATTGGGGACTAGGGGGTTGGGAGCCAGGAATAGGAGAGCGAAATTTCTCCAATTTGCCACTATTTTACACTTCGTTCACAAACCCCTAAAAGGCTTGATAGATCAGGACTAAAAGCCATTGAACCCACGAAATTAAACTATCGTCTTTTTCCAGCTTTTTCGCAAGGGGGAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTTAGTCCCCCATTAAAGAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 15 4006833-4002276 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4006832 37 100.0 33 ..................................... CATCTCCCGACGGTATCCCCTCCCCTCTCCCTA 4006762 37 100.0 34 ..................................... TTTTGTTTTTTGCAGTTTTAACCCTATTCCTTTC 4006691 37 100.0 35 ..................................... TAACAACGCGGTAGGTTAATCCTGTTCTTTGAATT 4006619 37 100.0 34 ..................................... TGGATGCACTCGCCCAAAGTGCTGCTAATTTTAG 4006548 37 100.0 35 ..................................... CCCACGATGTTACTGGACGCGCTATGACCGTGGGT 4006476 37 100.0 34 ..................................... CACGGAATCCATCGGTTGGCGGGTTACGAAAAAA 4006405 37 100.0 35 ..................................... GCGCAAGAGATGGGTTGGTCGCGTGTTACCCGACC 4006333 37 100.0 34 ..................................... TTTTGGGACTTGGGAAAAGAAGACCCAATGAACC 4006262 37 100.0 35 ..................................... GTATTGGTGATAGCACCTGTAATCACACCCGTAAT 4006190 37 100.0 33 ..................................... CACCAACACAGATTGGAGGATGTCCAGTTCCCA 4006120 37 100.0 33 ..................................... GTCATTTACGACCACTGGACGAGCATCTACAGC 4006050 37 100.0 33 ..................................... GTTATCGGGTTGTTGAGTAGTCAGATAAACGTG 4005980 37 100.0 35 ..................................... TGCGAAGAAAAGGCCGCCGAGGCTAAGGAGATTTT 4005908 37 100.0 33 ..................................... TTAGCTCGGAGTGTGTTGATTTCCTCCACCAAT 4005838 37 100.0 33 ..................................... CACATTGAGGTGGGTGTTCCGTCCTTGTTGACC 4005768 37 100.0 35 ..................................... TGGCTTGTTCAGGGCTAAAAACACAGATAAAAAAA 4005696 37 100.0 32 ..................................... TTCCGCAAGGGGCGGAATCCCGCCCTGTGGAG 4005627 37 100.0 36 ..................................... CAAGTCTATTCCTGGGTACTACAATCATAAAAAGAT 4005554 37 100.0 34 ..................................... CGGCTCGATGAAGTCGGGATGAGGAATGTGGAGA 4005483 37 100.0 35 ..................................... AAAACCCCTTGGTTTGCAGTCCCTTCCATTGGCTC 4005411 37 100.0 36 ..................................... CGAAAATACCGCGCCTCTGCCCACAGTCCCCGTAGC 4005338 37 100.0 34 ..................................... CTTATGGGCGAGGGAGACAGTGAGGAGCTTCCTC 4005267 37 100.0 34 ..................................... TGGCGAGGGGCGGGGGATGGGGCGATCGGCTTGA 4005196 37 100.0 34 ..................................... AGGAAGCCTCCTCGTCTCACCTAAACGCCCAAAT 4005125 37 100.0 36 ..................................... GATGTAGGGACTGGACTGCATCGCGAAACCTTCCAA 4005052 37 100.0 33 ..................................... CATCCTCTGTACTTACGGGTTCGAGGTCTTCCC 4004982 37 100.0 41 ..................................... TCGGGATCGGGATGTTGAACGCGCATTACGCTGATCTGGAA 4004904 37 100.0 33 ..................................... CTCGACCTGAACAAGGGGAAAGCCGTTAACTCT 4004834 37 100.0 35 ..................................... TCCCCAGTGCGAGCATACAGCCGAGCCATCGCAGC 4004762 37 100.0 34 ..................................... TACTATCCACGTTGAAAAAGACCAACAAGGTCGA 4004691 37 100.0 38 ..................................... CCCCTAGCATTATGAGCGTTAGCGTGCCAGAGTCAGAA 4004616 37 100.0 41 ..................................... TTCTTGGTTTATTGCAAACAATAACGGTCACTCCCAGCCGG 4004538 37 100.0 36 ..................................... TTGGTTTTTTAACTCATTGCGTAACATCATCTTAGT 4004465 37 100.0 32 ..................................... ATGCTACATCAAAAGTCGTCCGCAGCGATCAA 4004396 37 100.0 37 ..................................... GCTAGCCGGGAGTGAATAATCTCGACGACCTCGCCAA 4004322 37 100.0 35 ..................................... GGGTTCAGGTTGCAATAGCCGAGACACATCGCGGT 4004250 37 100.0 36 ..................................... TGCTTTCTGGAGGCGATTCCGAAAATACCGCGCCTC 4004177 37 100.0 35 ..................................... CGACGATCTGAGGTAAGGGAGGCCAATCCCTTGGG 4004105 37 100.0 34 ..................................... GCATTGCAGCCAAACCACTAACGTCCAATCAAGA 4004034 37 100.0 35 ..................................... GCTCATCTAGCCCAGCAAACATGGATTAGACTATG 4003962 37 100.0 37 ..................................... TCAATAATCGGGAGTCGGGAAAAGGGTTGGGGGGAGT 4003888 37 100.0 35 ..................................... CTGATGATGTCCTTGGTCAGATTCAGGCGGTCTTG 4003816 37 100.0 36 ..................................... CAAGCATTTGAGAGCTTGCTAGGGGAATTAAGGGAA 4003743 37 100.0 34 ..................................... CTCCTCTCAGCTTGACATAGACGACAAATATGGG 4003672 37 100.0 36 ..................................... ACACATTGGAACGAGCCAAGGAGGTTAAGTCTAAAA 4003599 37 100.0 34 ..................................... CCAGAGGGATGGGCGTTACCGTTGCTATTAGAAC 4003528 37 100.0 33 ..................................... GTGCTAGACCAATCGGGTACAGGAGCAGGTAAA 4003458 37 100.0 34 ..................................... CCAACACCTTCGGCGAAACCCTCAACAAATTACA 4003387 37 100.0 34 ..................................... GTGTTTATTCATGAGTCTCCAAGAATCTGTTTAT 4003316 37 100.0 37 ..................................... ATGCGTCCCTCCTGTACAGGTTTCGGAACTGGGTGGT 4003242 37 100.0 33 ..................................... CCGATTGTCGACGCGGGATTGGTAAAGCGGGAA 4003172 37 100.0 35 ..................................... ACATACTTGGTCGGGCATTTGCCCGGATACGTCTA 4003100 37 100.0 34 ..................................... TCCCCCAGTTGGCTGGATTAATCGAGTTTGCAGA 4003029 37 100.0 33 ..................................... AGTTTACAGGAGGTCTTAGGTGCAAGTGACAAG 4002959 37 100.0 35 ..................................... CTCCTATTTCCCCCTATGATAGCACCTCCCTCGCC 4002887 37 100.0 35 ..................................... ATCCATGTATTTAGCCCAGTCAACGGCGTTTCCGT 4002815 37 100.0 36 ..................................... CCCGCATTGCCTTGACCGACCACCCATTAGTAGCAG 4002742 37 100.0 36 ..................................... TGAGGAGAGCCTGCTTAAAAGCAGGAATTCGGGGAG 4002669 37 100.0 34 ..................................... CCCTCTCCCCCGCCCCGGCCGTGTTGGTGGGTTG 4002598 37 100.0 36 ..................................... GCGTTGCCCACGACCGGGAAATTTGAAGTTAATCCA 4002525 37 100.0 35 ..................................... CCGCCAAGGAGGCAAGGGTTCTCATTGTCCAAACA 4002453 37 100.0 35 ..................................... TAAGCACTCAAGGAAAAGCTGGGGCAGGTAGGAGA 4002381 37 100.0 32 ..................................... TGGTGATAATCTCGACCAATTGCCCCTCTAGA 4002312 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================= ================== 64 37 100.0 35 GTAGCACCCGGCCTCCGGGCTGGGTGAGGATTGAAAC # Left flank : CGATTTAGACCACTATCCTCCTTTTATCCCTCGTTAAGTGTATGAATATCCTTGTCACCTATGATGTGAATACAGAAACTTCGGCGGGTCGTCGTCGGCTCCGTCAGGTCGCCAACACCTGTAAGGATTATGGTCAGCGTGTCCAGAAGTCGGTTTTTGAGTGTCGGTTGAATGCCGCACAGTACGAGGCGTTTGTGGCAAAGTTGGTCAAAATTATCAAGCGAGAAACCGACAGTTTAAGGGTTTATCGTTTACGGGGCGATCGCAGTGATTGTGTGGAGGTCTATGGTTTGGATCACTATGTCGATTTTGATGAACCGCTCATTTTGTAGCGCGAACCCCAAGCGATGGGTAAAACCTAGGGGGTTTCGCGCAGCTTACGGAGTAAGGGTTTCAGCCTTTAGGGTTGGTTTTTCCCCCTCTTGTTGCACCCCTTCTCAAGGAGGTTCGCGTTTTGGGGGTCTGGATTGCTTATTATCTAGGGGTTTGATACAATCGCG # Right flank : AACCACACTAACCAACAAACAAACCATACAGATGATCTAAGTAGCGTCTGGTGTTATTCAGCAGACCCTAATTAAAGCCTTAAAACTCCTTTTTCTACTTGCATGGGCAAGACATTCAATAAATCAGTTTGGGCGCAATACTTGATATCATCAAGTAGGTTTAAACGTAACAACCGTTGACCGTGACTTGCTTGGCAGAATAACTCCACTAACTGATCTTGCCATTGACGGTATAGACTCACCGCCCCTAACACTTCATCATTGCCGACCATCGCGGGGTTTTGTTCATAAAAAGGAAGTGCGATCGCCCCAGCACAAACCGTATCCTCTAAAGAATAAGCCCCTTCCCAACCCGAACCCACTAACCAAACCGTCTCCGGTTGATGTTGACCCAAATAATCTACAACTGCCTGACGGTTCACCTGCGCCCCCGTCACGACAACCGAGGCATTTTCTACCCGTTGTAACGTCCGAGTGCCATTCGTGGTACTAATAAACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACCCGGCCTCCGGGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.50,-16.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 16 4327149-4330370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 4327149 36 100.0 38 .................................... GCCACTGAACTCAACCCCAGCTGCAGTGTGACAGAAAG 4327223 36 100.0 41 .................................... AGGGAATAGGGAATATTCGGTGCCATTTATTACATACTGCT 4327300 36 100.0 38 .................................... TTTACTATTGTTTAAAGTGATAGACGAAAATACCACTT 4327374 36 100.0 41 .................................... TTGGGCGGCTAGCACGAGGAACTGAATCGCCTCAGGATCGA 4327451 36 100.0 36 .................................... TCCAGGCTAAGACGCCCTTTAGCTGCTGCCCGTTGG 4327523 36 100.0 38 .................................... CATAGCCGACGTCGACTTCGTCTTCGTCTTCATAGTCG 4327597 36 100.0 37 .................................... AGTTTGTTTACTGGGTATGGGTAGGAGCCCTTCAACT 4327670 36 100.0 39 .................................... ACAGCGTCTCGCAACGCTTCCTCATCCCCCTCATAAGTT 4327745 36 100.0 38 .................................... ATTAATTACTTGCTAACACGGTAGTGAGTAGCCTCGGC 4327819 36 100.0 41 .................................... AGTGGGTGTATCTACATCTACACCCCAATGCATTGTTCCCT 4327896 36 100.0 37 .................................... TTCGGCAGACAATGAACCTGCCAGTGATCCGTTCTGG 4327969 36 100.0 37 .................................... TTCGGATTCCTCTAATATGGAATCGAATTCTGCTATG 4328042 36 100.0 39 .................................... TCTCTTTATCCGTACGGATGAGAGAGGCGCTGCCATCAG 4328117 36 100.0 36 .................................... GATGAGGCGCAAGCGGTCGAGATTCGGAACATCACT 4328189 36 100.0 38 .................................... ACTAGACATCGAAACGACTGGTTCAGCCAAGAATCCTA 4328263 36 100.0 36 .................................... TACGTACTCTTCAAGCAACTCTCCCGCAGTGATTAG 4328335 36 100.0 39 .................................... ATCTTTTGACCCGTTAGGGTATAACCAACCGTCCGAGCT 4328410 36 100.0 35 .................................... CAGACTTCTTCGGGAACATTAGCATGGGGAGATTA 4328481 36 100.0 37 .................................... TTAGGCAAAATCCGCCGTTACTGTTCCTTTTTCCGTT 4328554 36 100.0 40 .................................... TCCCCCGGTGAGGAGGTCACGATTCCCTGTCTTCCCTCGA 4328630 36 100.0 35 .................................... TATTTGAACTGGTCTTCAAGAGGGATCATAATCCT 4328701 36 100.0 39 .................................... TGCGAGTAATCCCACTCAGCAAAGTTTGTGTACCCGGGC 4328776 36 100.0 39 .................................... AAATGACGATCTTGTTAACCAACCATGTGATTTTGTTAA 4328851 36 100.0 40 .................................... TTTAATACTAATAGCCATAATTTTCTCCTAATGGCTAAGA 4328927 36 100.0 36 .................................... CCAGCGATCTGCAGAAGCAGAGATCCCAGCTAGACC 4328999 36 100.0 50 .................................... TCCGACAAAAAGTCTGTTGTTTGCTGCGCGATCCACGATCCTCCCTTTGA 4329085 36 100.0 38 .................................... CCTTGGCTCCGAGGGAAGCCGACAAGTTGAACACTAGG 4329159 36 100.0 37 .................................... TATTCTATCTCTTTTCAGAGCTATGAAGCTTTTAGAA 4329232 36 100.0 41 .................................... TAAATCTTCATACTGTTTCCTTTAGTTCAACGAACTTAGCA 4329309 36 100.0 35 .................................... ATATTCTTCCGCACCAACTACGTGCTCCACTTGGG 4329380 36 100.0 41 .................................... AAGTTAGAGGGATTCAATCTCATCCTCTAACTCTGCCAGTT 4329457 36 100.0 41 .................................... AGTCGTTTATCAATCAAGAACTAGGTCGTTCCGATTTTGTG 4329534 36 100.0 39 .................................... TCAGTAGGCAAGTCATTACGATTGCCACCTGAAACATCG 4329609 36 100.0 36 .................................... CTAAAACCCGCGCTGGGGAAAGGGTGGGTAGTATTA 4329681 36 100.0 36 .................................... CAACCTTCTTTAGCTACCGTGTGGATGATCTTCCCA 4329753 36 100.0 37 .................................... GATACTAACGAGGATCCTTGGGACACAGCATTACAAA 4329826 36 100.0 36 .................................... GATGGCTTCTTCAGGTACGGATTGATCCACTAACAA 4329898 36 100.0 37 .................................... TCGTCTTTCATCATCCCGGCGACGACGATGTTTTTAA 4329971 36 100.0 37 .................................... CAAAAGCCATTTGTTGCTTTTGACTTTTTCTACTGTT 4330044 36 100.0 41 .................................... CTTGAAGCTTTCGCATACGAGCAAAAACTATTGCACCCATG 4330121 36 100.0 35 .................................... TTGACGTGGCTAAGTTCTCCGGCACGTTTAACCCA 4330192 36 100.0 35 .................................... GCTTTCGACAAGCCGGGCTCCATCAACCCCTCTTT 4330263 36 100.0 36 .................................... TATAATTTTGGTAGGAATACGTTTCCCGGCCTTATA 4330335 36 91.7 0 ............................T....T.T | ========== ====== ====== ====== ==================================== ================================================== ================== 44 36 99.8 38 GTTCCTCTTTAATGGGGGACTAAATTGAATGGAAAC # Left flank : ACTATGGCAGGCGCTGCGCCCCCCTACCAGTGGACTGAGAGGCTCTGGTTGAGGTTGATTTTTATATCAATAAAAAGCCGCTATTTAAATTTGGGCAAATTAATCCGCTAGGTTGATTATTTTATAAGGGTTTAGGGGGGAATTTTGGGGGTACATTAAAATAGTGGCTTTTGGGGATTTTGTGGGGTCTGGGGGGTGGGGGGGAGGCGCGGCCGGGATGGCTCGGTTATCTAGTGTTCTGTATGGTAGTTAAACACTAGATATAGGGGATTGACAAATATTTTGCTTTGTGGTAAGGGGAAGATAGCGGGGGGGGAGTTTTGCGACGGGTCGGGAAAATGGCTGAAACGTTGATTTTTCGTCGAGGTGTTCGATAGCTTGTCCTGTCTGAGTTTGAGGTGTGTTGATGGAAAATTCAAGGGGTCTAAGAGGGGTGATTTTTTGGAGTGTTCGCAAATGGGGTCTAGACAACAGGCAGGGCAAGGGGTTAAAATGGGGGT # Right flank : TGAAAAATTTCACCAATTTAAGCAAAATAGAGGCTTCAAAAATACCTGTAGATAAGCATTTTGTAGATGGAAATAAATCGTTAGATTTTACTGTCACCGATTTCTGGCAATGGGCATTGTCTGATTTAATTGAAAACAGAAACAGAGGGATTTTAGCTGAGTTTCTGGTAATGAAAGCACTCCATATTCAACAAAAAACACGCCTTGAATGGGATGCGTATGATTTATTAACACCCAATGGAATTAAAGTAGAAGTTAAATCCGCCGCATATTTTCAATCATGGAAACAAAAAGCCAAATCCACTATTTCATTTAGCATAGCCCCAAAATTAATAACTGACTCCACCACAAACACACCTATTTCAAAACGTCTGGCAGATGTTTATGTTTTTTGTTTGTTAAATGTTTCAGATTCAGAGACACTCATCAACCCGATGGATATGGAACAATGGACTTTTTTTATTGTAAAAACCGAAGAGTTAAACCAAAAACGAAGTAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCTTTAATGGGGGACTAAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 17 4829107-4828353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH980292.1 Spirulina subsalsa PCC 9445 Contig210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 4829106 36 100.0 35 .................................... AGAACAATCAGAGTTATTAATGTTGTGTACAATAT 4829035 36 100.0 35 .................................... ATCAAGATTAGATTCTCTAGGATTTTCCGGCTATC 4828964 36 100.0 38 .................................... TTTTTTCTCGGATTTGGTTTGAGGACTTAGCTCTCTGT 4828890 36 100.0 36 .................................... TGTTCTGGAGAAGTTGTTTTGCATAACTTCCCAAAA 4828818 36 100.0 35 .................................... TACCACACAAGATTGTTTTCGACACGATCCGAGCG 4828747 36 100.0 37 .................................... TTATATTCGATATGGTCAACATACTCAGTGAGTATGC 4828674 36 100.0 35 .................................... TCTCCAACATCTATTTTTAGGCCGAAATATGTTTG 4828603 36 100.0 37 .................................... CAGAATTCAACAGCGTCGTCGTAATTGTCGAAGTATA 4828530 36 100.0 36 .................................... TAAAGTAGCTAAGAAAGCCTTTTGAGTTTCCACTAA 4828458 36 100.0 34 .................................... AAATGTTTACGACAAATGAAGTTAACAGCAAATT 4828388 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 100.0 36 GTTCCTCTTTAATGGGGGACTAAGTTGAATGGAAAC # Left flank : GGGGGATGTTGCTGAAGCGGCAATGTTTGAAACTTTCAATATGGGGGTGGGTTTTGTGGTCATTGTGCCGCCGGGTGAAGTGGAATCTGCGATCGCCTATTTTCAATCTCATGATCTTTCTGCTTTTGTTCTCGGGGAAGTCATTCCCGGAAAGCAGAATCTTGTTATAAATTAGGGCTTGCTGAATAACTCTACTCGTGGGGCTAGGGAATAGGGAATAGGGAATAGGGAATAGACATCTCCCCCGCTCCCCCTACCATTCCGTTTTATTGCGCATTCCTTACCATAGAGGAGTTAATTTGTCAAGATTCAGCAAACTTTTCCGAGGCTCCCGGAAAATGGCTGAAACGTTGATTTTTCGTCGGGAGCCTCGGTTTCTTGTCCTGTAAGGGTTTGAGGTGTGTTGATGGGAAATTCAACGGGTTACAGAGGGGTGATTTTAGGGGAGCCTCGGAAATGGGGTCTAGACATTAGGCGGGGCAAGGGGTTAAAATGGGGGG # Right flank : TTCAGACTAAACAAGTTAGATAAAACAACAAATTGCTACCAACCTGACCCATCCCCAAAAAATTCCCATCTCCTGTAATAAAGAGGGAATTTATTGGAGACAAAGCCTCCAACAAAGTGTTACTGAGCCGCGCCCAATCACGAGGACAAATTACCAGTCACTCCTCCCCTAATTTTTCCCCAAAACCTGAATTTTTTGTAAAAAATCATGGGCAACCATGGCGGGATCTTGTTGCTTTCCTGTCACTTCATAATTCAGATCCTGCATAATAGAATCAGTAATTTGGGTGGTAATATTATCCAAAATATCTGCAACTTCTGGGTGTTTTTTTAACACATTTGCCCGCACCACTGGAGCGACTTGATAGGGGGGGAAAAAGTTCTTATCATCCTGTAACATCACCAACTTAAAGGCACTAATTTCGCCATCGGTACTAGACCCCACCGCAATATGCGCTTCCCCTGACATTAAGGTACTGTAGCGAAATTCAGGGGAAACCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCTTTAATGGGGGACTAAGTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //