Array 1 1546-362 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKYV01000109.1 Klebsiella pneumoniae strain AS012257 AS012257_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1545 29 100.0 32 ............................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCC 1484 29 100.0 32 ............................. CGATTACGGAGTCGTTCACAAACCGACCACCG 1423 29 100.0 32 ............................. TCGGTTTCGAGCGCGGTGTATTCCTGCCAGGC 1362 28 89.7 32 .....-......TG............... CGATTACTGAGTCGTTCACGAACCGGCCACCA 1302 29 89.7 32 ........T...TG............... CAAAAATGCCAGGCACTGACTAAACCGCCGTC 1241 29 93.1 32 ............TG............... TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG 1180 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 1119 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAACT 1058 29 96.6 32 T............................ ATAACTATCAGGGTAGATTCATGAAAAGGGTA 997 29 93.1 32 ....C.......................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 936 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 875 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 814 28 89.7 32 .....-......TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 754 28 93.1 32 .....-......T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 694 29 100.0 32 ............................. GCAGCGGCCTGACGATGATTGATATGAACGGC 633 29 100.0 32 ............................. GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG C [628] 571 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTAC 510 29 93.1 32 ............TG............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 449 28 93.1 32 ..........-..............A... CACTACCAGATCCGAATGGACACCCGTAATGA 389 28 89.7 0 ..............C........-....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 95.0 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATGGGTCTTCCCCGATCATGGTGGGAAGGCTCAGA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : TTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 64843-62193 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKYV01000021.1 Klebsiella pneumoniae strain AS012257 AS012257_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64842 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 64781 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 64720 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 64659 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 64597 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 64536 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 64475 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 64414 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 64353 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 64292 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 64231 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 64170 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 64109 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 64048 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 63987 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 63926 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 63865 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 63804 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 63743 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 63682 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 63621 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 63560 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 63499 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 63438 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 63377 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 63316 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 63255 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 63194 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 63133 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 63072 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 63011 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 62950 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 62889 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 62828 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 62767 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 62706 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 62645 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 62584 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 62523 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 62462 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 62401 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 62340 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 62279 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 62221 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //