Array 1 99150-98573 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCWQ01000010.1 Escherichia coli strain VREC0451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99149 29 100.0 32 ............................. CAGGAGATCCCCGGAATATGGACCCAGAGCAG 99088 29 100.0 32 ............................. GTGGGTAAATTTAAATGAGTGATAACAATGAG 99027 29 100.0 32 ............................. GTCGCAGGCCTGGCAGTTCTTATCGTGATCTA 98966 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 98905 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 98844 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 98784 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 98723 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 98662 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 98601 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116022-114651 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCWQ01000010.1 Escherichia coli strain VREC0451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116021 29 100.0 32 ............................. CTGCAACAGAGATTTTAACCTCTAAAGCAGGA 115960 29 100.0 32 ............................. TCTTGAAGATATCCAGCCCCAACAGCTGTCCT 115899 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 115838 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 115777 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 115716 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 115655 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 115594 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 115533 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 115472 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 115411 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 115350 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 115289 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 115228 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 115167 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 115106 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 115045 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 114984 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 114923 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 114862 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 114801 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 114740 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 114679 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //