Array 1 41888-40920 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLD01000027.1 Geobacillus sp. DSP4a NODE_27_length_50452_cov_39.7504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 41887 37 100.0 34 ..................................... ACAAGATGATGAGTTTGATGTGGAAGTGTATCGA 41816 37 100.0 33 ..................................... ACCGAAGGGGAAACGTGGGAATCCCCCACTTCC 41746 37 100.0 35 ..................................... AGTCAAATCGGCTCTTGGATTGCCTGTCATCGCTC 41674 37 100.0 36 ..................................... GGGATGTGGTACTTGTCTTGGTATTCAGCCGTCGGT 41601 37 100.0 35 ..................................... GATTTACGGTATCCAAACCAGCGCAGGAATGGCCA 41529 37 100.0 36 ..................................... AAGCTTAGATAGGCCCGACGAGCATTAGCCATATGC 41456 37 100.0 34 ..................................... CTCATAGATTTCTCCTTTGGCCGGGTCAATCGCC 41385 37 100.0 35 ..................................... TCATCTTTATAATATTTTGATGAACCTATATTATA 41313 37 100.0 35 ..................................... AATTTCAGCGTCTCGCAATAGACGATTGCATCGAC 41241 37 100.0 33 ..................................... ACAATCTCATGATTCATGCCGGCGGTGTTCAAA 41171 37 100.0 34 ..................................... TTGGACGGGTCGATGATCCACTACGACCGATATT 41100 37 97.3 35 .....................A............... ATTCGTCTCAAAGGTCTAATTAAAGGTGGAACAAT 41028 37 100.0 35 ..................................... TAACTCACACATCTTTTTCAATTGCACAGCAGTCG 40956 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 99.8 35 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : TGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGAAAAGTGGCGACCATTTGCCAAAATTTTGGTCAGCGGGTGCAAAAATCAGTGTTCGAATGCAGCGTTAGTCAAGCGCAGCTAGAAGAAATGGAGCATCAATTGTTGCGCGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTAATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATGCGCGAACATAAAGCGATGCTGAAAAAGAAGGGGGATCGCGATGGGCGGAAAAGCTGGTTATAAAGCCGAAGAGGGAAAATGGATCTGTGATCATTATGACTTTGCCCCAAACAGAATGCGTAAGTTCGCGTTTTTATATCTTGAAATGCGCTCAACACAAGATATCTAAACGCGGGCG # Right flank : AAATTTGGTCAGGCCAAGCAGGAATTTGCCGCTTGCTGTCGAATTCATGTTCACGAAAATTGTTGCTTCACCTTCTCCACATCTTCTTGAAACTTCTCATGTGTTTTCGCCAGCACTTCTTCGAAGACGCCGTCGAGCCGCTGTTCGAGGACGGCGATTCCTTCCCCGGTGATTCCGCCTTTGACGCACACTTTTTCCTGCAGCGTCGGGAGCGTGTACAAGTTTTGCTTCAACAATTCCCCAAGACCGATGATCATGTCAGTTGCCAGCATCGTCGCCTGTTCTTTCGTGATGGCGGTTTTGGCCGCTGCGGCGTCGATGAAGCGTTGCAGCAAATAGCTGAAAAACGCCGGACCGCAGCTGGAGATGTCGGAAGCGACGCGGGTGATGGCCTCATCGATATACACCGGCGAGGCGATGCGCCGGAGAAGATCATCGATCGTTTGCCGGCAGTCGGCCGAACAGCGTGATCCGATTGTGATGAGTATGCTGCCGGAGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.40,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 46557-45072 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLD01000024.1 Geobacillus sp. DSP4a NODE_24_length_53904_cov_42.9677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46556 36 100.0 30 .................................... TTTATTTGTTGACTATAAAAATCTAGGACA 46490 36 100.0 30 .................................... AAGATACAGACGATATTCACTTGAAGCGAA 46424 36 100.0 30 .................................... TTTTTCTGAAAATGGAGCGAGGTGCTCCAA 46358 36 100.0 30 .................................... AACCTCCATCGCCCTTTCTACTTGCTCAAC 46292 36 100.0 30 .................................... TCCGTGTGCGTGCTGATCGGCTGGCCGACC 46226 36 100.0 30 .................................... AAAGGCGTCACTCAGTTCAAGGGGAACAGT 46160 36 100.0 30 .................................... TTTATTTGTTGACTGTAGAAGTCAAGAACA 46094 36 100.0 30 .................................... ACCATACGGCACCAATGAGACTAAAGACAT 46028 36 100.0 30 .................................... CCGTATTCGAGCCGCTACGGCCTAAAAACT 45962 36 100.0 30 .................................... GCAGTTTGTCGTCAAAAGACTGCTGGAAAT 45896 36 100.0 30 .................................... CCCACAGCCGGCCAAGGTGGATAAAAAAGC 45830 36 100.0 30 .................................... GAAATGAAGGAGCATGCCGTCGCATGGGCA 45764 36 100.0 30 .................................... CTGATTTGAAGATGTCAGAGTTTCATATTT 45698 36 100.0 29 .................................... TTACCACCGGCGTAGGGAAAATCATTGTT 45633 36 100.0 30 .................................... TTATGTCTGTAGTCCCCGTCTATCATTTGT 45567 36 100.0 30 .................................... ATCACCTGCGCCAGCATTCTCATGTCTTTG 45501 36 100.0 29 .................................... CAGCGCTTCGGTTATGTCCCTCACCAACG 45436 36 100.0 30 .................................... ACTAACTGATGAATTATAGCTTTATCGCTG 45370 36 100.0 30 .................................... TAGGGATTTGCGTTATTGGCGATTATCGAT 45304 36 100.0 30 .................................... CTTCTGGTTTTCGTGTAAATGCATACTGCG 45238 36 100.0 30 .................................... CCATAAATCAACTAAGTAATCATAAGCCTT 45172 36 100.0 29 .................................... GGACATGGTGGAAACTGTTGCGAGTGAGG 45107 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : AGCTTCGTCACGGCAAGCCGAAGCCAAGACCCTTCGTTGTTGAAATTGCCGGAACTTCTCCCGTTGCAACTGCACGTATATGAGTAAGTTTATGCGGTTGCTCGTCTTTTTCGATCTTCCCGTCGTGACCAACCGGGAGAAGCGCGAATACCGGCGATTTCGCACATTCCTGCTGAACGAAGGGTACGATATGTTGCAATTTTCGGTCTACAGCCGCGTCTGCCACGGACATGAAGCAACGGACAAACATTTGGCAAGATTAAAACGCAACTTGCCCCCTCGAGGATCGATTCGGGCGATGGTCGTAACGGAAAAGCAGTACGCAAAAATGCAGCTGCTTCTCGGGGAACCAACGGCGCAAGAAAAGAAAGTGACATCCACCCAGCTGACGCTTTTTTAAAAAAAACAGAAATGGTTCCTCTTTTTGCATAAGCGCCTTTGCATTTTTTGAAAGCAAAAAAGCCTGCGATCCTTGAGATTGCAGGCTTTTTTGGATACGT # Right flank : AAACGCATAAAACCATTGTCGTCGATCCCCCGGGGTTTTGGCACGATTGGAGGTCGACGACAATGTGGGGCTTGACGGCGAAGGGCCGTCTCACCCCTTCATCCTTTCAATCTTCTCCATCGGCAGCCCGGTCAGTTCGTGGATCGTGTCGACATCGTATCCTTTCGCCAGCATTCTCTTCACCACGTCGAGCTTCCCTTCCTCGATCCCTTCTTGGCGTCCTTGCTTCATCCCTTGCTTTAACCCCTGTTCGATTCCTTGTTGGATTCCCTTTTCCATCCCCCGCTGTTCGTATGAGACGATGAGCTCCATCACACGCTTTGCTTCCTTCGTTTCCATTTGGCTCACCTCGTGTCGCCGTTTTGCTTCCTCCTCTTCGGATCGCCGCAAATACGTCTCGAAAAAACCGAACAACAGCCGCTGTTTCGCTTCGTCCAGTTCGAGACGGACAAGCATGCGCCAAAATTCCTTTTGGAGAAGGAGACCCGATCGCTCCGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 52035-52266 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLD01000024.1 Geobacillus sp. DSP4a NODE_24_length_53904_cov_42.9677, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 52035 30 100.0 36 .............................. TTGGAAATAGTGATAAGGAATTCCGAGACGTTGACA 52101 30 96.7 37 ..........C................... TCAGGAGCCTCATTTTCATATCGGGGAACTGGATCAA 52168 30 100.0 39 .............................. GGTGTTTCTTTCGTAACCGAATTGCCAAATAACACTTCG 52237 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 99.2 38 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAGAGGAGGAAGCAAAACGGCGAAACGAGGTGAGCCAAATGGAAACGAAGGAAGCGAAACGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGAATGGAAAAGGGAATCGAGAAGGGAATCGAACAAGGGGTCAAACAAGGGATCAAACAAGGTATTAAACAAGGGCGCCAACAAGGGATTGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGGTATGATGTCGACACGATCCACGAACTGACCGGGCTACCGGTTGAGAAGATCGAACGGGTGAAGGGGTAAGCAGAGCAGACTCTTCGCCGTCGAGCCTCACATTGTCGTCGACCCCCAATCGTGCAAAAATCCCCGGGGATCGACGACAATGGTTTTTAGCGCCCTAAACCTACAGCCATCAAGGTTGAAAGCCGTTGACAGAATTTTCGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CTTCGGCAGATGATCAAAGAAGGCCTGGAATCCGGGATTAGATTCGGCACAGCGAACCGGGAAATCTGCTTGTGTCTACTAGTTGCAATGAATGAACTGGGGGTGAAGAAACCATGATCACGATCTATGACTTGATCGGCTACATTCAAAACATGGACAACATGGACAAATTGGATGAAATCATCAGTCGATGGTACTTTCAAACGTCTGTCTGGACATCACAGGTGAAAGAAGAAGTCAAAAAAGCGGTGGTCGAAATCCTACAACTAGGCGAACCTAAAGTGTACCAGTTTTTTGTGGATATGTACGGTCTTAAAATGTGAAGTTTTTATCGTACCTATAAAGGGATTGAAACGTCATCCCGGTCGTGACAATTGGAGTTCCTTCTGCCGTTTTTATCGTACCTATGACGAATTTCTCACTGTGAGCAGGATGCCGCCTTGGGGACGGCGAATAGAAAAAGAGAGACCATCAAGGTGAGGTGATTGAATGGCGATTGA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 47380-43174 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLD01000029.1 Geobacillus sp. DSP4a NODE_29_length_47523_cov_42.1338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 47379 29 100.0 38 ............................. TTGATCGTCGTCATCACAACGGCAGGATTCAATCTTGA 47312 29 100.0 35 ............................. ATGATTCAAACGGGAGAGTATCACAAATCACTTAC 47248 29 100.0 35 ............................. TCATAACGGAAATCCATCATTAAATCCGTTTAACT 47184 29 100.0 39 ............................. TTTTAACCGTAAAAGGAACGCCCCTCACAGGGCAGCCGG 47116 29 100.0 36 ............................. GGCAGATAGATAATAAAGAGGCGGAACGAAAAGCTT 47051 29 100.0 38 ............................. TCATTCAATCCTCCAGTCTCCAACTCGGCTTGTACTTA 46984 29 100.0 36 ............................. CGTTATCGACTTGCTTTAAATTAGCGTAGCGACCGA 46919 29 100.0 38 ............................. CTTCTTCAATGTCGGCAAGCACATCCACAAGGGAGAAA 46852 29 100.0 36 ............................. TTGCAGTTTTCACTTTTTGTGGCAATGCTTGCAGGA 46787 29 100.0 32 ............................. CAACGTCCTGCCAGGCGATATGAAACTAGCAG 46726 29 100.0 37 ............................. TTGGTTTTGGTGATAATAAGCCTAAAGCGAGGTGAGC 46660 29 100.0 37 ............................. TGTGTAAGTAATCATATTTATATAACATTGGAAAATT 46594 29 100.0 38 ............................. CGATACGTCTACGATACGTGGGCAAAAAGAAAAAGAAA 46527 29 100.0 35 ............................. TTGAGATAGCTTTCAACATGTCTTTGATCGCGTTT 46463 29 100.0 35 ............................. ACTCTTTGCGAATCTTTATCTTAATGAGCTTGACC 46399 29 100.0 34 ............................. AAGTATGTTGTATCTAGCTGACTGTATCACTCTT 46336 29 100.0 36 ............................. ATTTATGGACGAGACCAAAACCAAAGCCGACATCCT 46271 29 100.0 36 ............................. AACGGCAGGGATTATGATTTTAAAACAGCATATTCC 46206 29 100.0 38 ............................. TTGCGAAGGCGAAACAGTTAGGATTCGAGTGGGGCGGC 46139 29 100.0 36 ............................. TATTTCATGGATCGGTCTCTTCTTTCAGACGTCTTT 46074 29 100.0 36 ............................. AATTGACTTAAAAGCAAACGAAAGACAGATGATTGC 46009 29 100.0 38 ............................. TTATTCATTTTGTTAAATCTCAAGGGTGGGATGTTTAT 45942 29 100.0 39 ............................. GACATGGCGACGATCATCATTATGTATCGTGATCGTTCC 45874 29 100.0 37 ............................. GCGCCTTCATCACGCGGCTTGTGTTGCGTGGGCTTCC 45808 29 100.0 36 ............................. CATCCCGAACATCGCCCAGCTTGAGACGGAAGTGCC 45743 29 100.0 40 ............................. TTCGTGCCGCCTTTGGTATTTCTCCATCAGTTCTTTAGAT 45674 29 100.0 37 ............................. TTCACATCAAATTAGCTTGCCCGATCACCGCCACAGC 45608 29 100.0 38 ............................. CAACCGCAGCCGAAACCACAACAAAAAGTGTCTGACAA 45541 29 100.0 35 ............................. TGACGAGATGTTCAAGTTACGCGACTTCTTTGATA 45477 29 100.0 35 ............................. TTTGCTGTGCGTACATCAGAAGCATTTCTGCCGTC 45413 29 100.0 37 ............................. CAAGATGATCCGCCAATCATCCGGCCTTGAAGGCTTC 45347 29 100.0 36 ............................. TTGTATGCAGGGTTGGAAGCACGTGTGAAAGCTGCG 45282 29 100.0 35 ............................. AGTACTTACTGACAGTCTAACGGTCGCGGAAATGT 45218 29 100.0 36 ............................. CCGAAAAAAACTCACAACTACGGCAATGCTGATCGA 45153 29 100.0 35 ............................. GCGTGACATGGAAGGAGGGACATCACACTACGGCC 45089 29 100.0 36 ............................. CGAAAGAACAATGATGAATAATTTGTGCTTGTGCTG 45024 29 100.0 37 ............................. ACGCAAAACTTTGCTTCAAGTTACAAACGGAAATTGC 44958 29 100.0 36 ............................. CTACATTATGCGGAATGACATTTATATCGCTTATGG 44893 29 100.0 38 ............................. CTTGATCGGGTTTTTCATCTTGGTAGCATGAATCCCGG 44826 29 100.0 35 ............................. TTTGTATGAATTGGGACTAAACAAAGAGGAGATCA 44762 29 100.0 39 ............................. CATTCAGAAAATCACGAACGGCACTGGGGTACTGGTCAG 44694 29 100.0 36 ............................. ATGCAATCACGGCAAAGGGTGTTTCTGCGAGCCCGA 44629 29 100.0 36 ............................. TTATTGGAGGATGGAGACAAGAGCAAGCGCGACAGG 44564 29 100.0 37 ............................. GACGATATGAAAGCTATTTACGCTCGTGTATCGACGG 44498 29 100.0 36 ............................. AAAGCCGGAAACAGGGTTAATCGGCACGCCGGAACC 44433 29 100.0 35 ............................. CAAAATACTCGACAAATCAACAGATGAACAAGCTC 44369 29 100.0 36 ............................. TGACAAGAGAATTTGTCCCTGTTTTGCGTAGCGGTG 44304 29 100.0 36 ............................. TGACAAGAGAATTTGTCCCTGTTTTGCGTAGCGGTG 44239 29 100.0 37 ............................. GATTATTGGCGCGGGTTCAATGCCGGGATGAAAGAAG 44173 29 100.0 41 ............................. TGCGTTTTTGAAGAAGATCGATGCGACTTCCTCAACCGCCC 44103 29 100.0 36 ............................. GGTGCTGGAAAAAGCTCACAAGTCCGCAGCATTATA 44038 29 100.0 39 ............................. TCGGAAGGGGCATTGCTTACAGCATCGATCATCTCACAA 43970 29 100.0 35 ............................. AAAGTTTATACAAGCCATCGCTTACGCTCTCGCTC 43906 29 100.0 38 ............................. GTCACATCAAACGTCACTCCGTTCATCACCAGCATCCC 43839 29 100.0 37 ............................. CCGAAATCGTCTCGTCAAACGATCCAACGGCTTCCGA 43773 29 100.0 36 ............................. CGTCTTCAAAGCGGGAAGACTGGTGGCCCAACATGG 43708 29 100.0 35 ............................. TAATATCTTTGATGATTGCCAATCCCGTTTCGTCT 43644 29 100.0 36 ............................. ATGACCCTGTACTTACATAGTACAGGAATCGCCTCG 43579 29 100.0 37 ............................. AATTTTTGTCTACCGGCAAATCAAGGGTGGCCGCCAC 43513 29 100.0 37 ............................. CTCACCGCCCACTCTCCACTGCAAGCCCGCCCGTTGC 43447 29 100.0 36 ............................. TGAAACGATTCAGGAAAGATGAAGAAAATCGATTGT 43382 29 100.0 37 ............................. AGACAGAGCAAAAACACCTAAAGCATACGGCAAAACA 43316 29 96.6 35 .................A........... CCGATTTCAAGCGGCAGGCTGGCGAGCACCGTTCC 43252 29 100.0 21 ............................. AACCATTTCATCGCCGAAGTC Deletion [43203] 43202 29 89.7 0 .......T................C...A | ========== ====== ====== ====== ============================= ========================================= ================== 65 29 99.8 36 GTTTTATCTGAACGGAGTGGGATTTAAAG # Left flank : AAGGAAATCTTTGTCCGAAACAATTCACAAAAAATTTAGCACATTCCTTCAGAAAAGGGGAGAGGGCTTTCTGAAAGAATGTGCAAAAAAATGGGCGTTTTGTGCTGAAATAAAATGATAATTTACAGTTATACTCATAATCG # Right flank : TCGGCGATAATGTGATGCCCGAGTTCGACAGTGACTAGGCAAACAAAATGCCTTTCGCCCCTTGATGCAAAAGTGACGAGAGACATTTGGGCACACTTTGGGCGTGTAGCTTAGGCGCGAGGATGGATGCCTAGGATCTTCGGAGGAGGTTCCAGCCCTAGAGCCGCAAAGAGTTGCGCTTGTTTGGCCGTCAGTTCAGTCCGTTGATGCAGGTCGCCGTTTTTGGAAGAAAAATGACCAAGCATGAGACGCTCACATTCGTCTCTTACTTTTGGCCATGATTCATGAGTCAGGAGAAAGGAATCGCGAAATGCTTTGGGCCAGACGTTCCAGGACGGCGCGATCCACTTCATCTGCGCGCCCAAACGAATCAATCACCTTCGCTTTCGCATATTTGGCCTTCGGATCCTATCCGTTGTGAGCAAGCTGGAGATACGCCACGGTCGTTCCGTCTTTGTTTTTGTGTGTTACTCGTCGTATGTACATGCCTATATTATAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGGAGTGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 199-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLD01000307.1 Geobacillus sp. DSP4a NODE_307_length_216_cov_40.5506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 198 37 100.0 35 ..................................... AATTTCAGCGTCTCGCAATAGACGATTGCATCGAC 126 37 100.0 35 ..................................... TCATCTTTATAATATTTTGATGAACCTATATTATA 54 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 36 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : TGATGAACCTATATTAT # Right flank : CAATTTCAGCGTCTCGCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.40,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 37754-37588 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLD01000033.1 Geobacillus sp. DSP4a NODE_33_length_38850_cov_47.4222, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 37753 30 100.0 41 .............................. TCCAAATCGCGTTTGCAACGGAGGAACTCTTTCACCCACCG 37682 30 100.0 35 .............................. ATACTTTTCTTCACGCTTTTTGCTTTCCCACAAAA 37617 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ========================================= ================== 3 30 98.9 38 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAAACGATTGACGGGAGAAGGAAAACGCAATTTTTTGATCCCGATGATGAGGTGTTCTCCCACTTGATTGAATTGAATTTCCGTCATAAATATGAAGCATACTACGGTGTTCCGCCGACGGAAAGGCTATTGATCGAGCCGATTCATGTTCATCATCGTCATCGTGTGGTGACGATGTTCAAGAATATATATATTACAGGATGGCTTGGCTATTACCGCCTCTGTTCTTCGCCAGAACAGTTGACATTTTTATATCATGTCGGTCTAGGTGGCCGAAATTCACAAGGATTCGGCATGTTTCGCCTCAAAAGTGGATAAACGAGTCACGGATTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGGTTTTTGGTGGTTCAGACTTACAGCCATCGAGGTTGAAGGTTATTGACAGAATTTTTGAAATGTGGTATTCTGAAAACAGCGCTAGATCGAAATGTTTGATGCGACAAGCATTTTTGGG # Right flank : TTATCCAACTCCCCGTCTTCCACACATATCTGAATCGTGTTTTCACCCGCGCAATTTGGTGATCTTTTCACCTCTTGTGCTGTCTTCGCTGGCAATGTGGAGATGACCCACCATCTTCCCTTGATCCTCGCCACGCGCAAAACTTCTTCTTCGTTCTGTTTTTCTCGCGGCAGCTTTGTTCGATGCGCTATACTTGGATAGAAGGAGCAACATTTGTTTGCTTCCGGATGGGCGTTTGTTTTTGCTTTTTCACGATGGGGGCAAGCAAAGGAAAGAAAGGGGAACGGTTATGCGCTGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGCGGACAGTGATCCGCACTGGGGTGACGGCGGTGTTGCCGCATGGGGGCAACTGGTTTTTGGAGAAGGTGCCCGCGGCTTGTTTTG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5853-6082 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLD01000041.1 Geobacillus sp. DSP4a NODE_41_length_26141_cov_44.1184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 5853 30 100.0 36 .............................. CTCCTTTACCTTTACGATTTCAGATTGAATAGTTTC 5919 30 100.0 35 .............................. CAAATTTCTCCGCGTAGCTGATTGTTTTCTTCTGT 5984 30 100.0 39 .............................. ACTTGAGCGTACAGATAGCCGTCCTCGTGCAAGTTGTCT 6053 30 90.0 0 ..............C......A.C...... | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 97.5 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TTGGGAGCGCAAATCGCCTACGCTCGGTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATATTGTCGCCGCTGTTGGCTGCGTCTTTGATCTTTCTATTAGGAATGGATGGCGTGACGGCTCAGGCATTGCTCATTGCCAGTTCGTATCCATGTTCACGCAATACGGCGCTGTATGCGCTCGAGTATGACTGCCACCCCGATTACGCCGCCCAGGCAGTGCTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCACAGTATATGCGGCCCGTCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAAACAACACGGCTAAACGGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGG # Right flank : CTGTCTCCTGCCACAGCTGAACCACCGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGGAAAAGGACAAATGCGAAATGGCACATGCCAAAAAAACGCGGGGGGAAACAAGAAGGAATTCGGCCGCGAAGGGCGAATACAGTACGGTGAATCCGACATTGCAGGGAGGGAAAACGTGGCGAAGAAGCGAATTGACCATGACCGGTTGTTCAAAGAGCTGCTGTCGACATTTTTTGAGGAGTTTTTGCTTCTTTTCTTTCCCGACGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGATGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAAACAAAGGTGAAAGGGGAAGACGGGCTCGTCATTGTCCATGTCGAGCATCAAAGCTACACCCAGCGGACCTTCCCCGAGCGAATGTTCCTCTACTTCAGCCGCTTGTTTCAAAAATACCGCCGCCGCATTCTCC # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 13629-16929 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLD01000052.1 Geobacillus sp. DSP4a NODE_52_length_17136_cov_42.8174, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 13629 29 100.0 37 ............................. GAGATTGATCGCGCGGCTACTAAAAGGGCGGTGGAGG 13695 29 100.0 35 ............................. AATCCTCGGAGACAAGAAAAACCGTCGTTTTGTTT 13759 29 100.0 35 ............................. GGCACTCGTCCTTTTTTACCTGGTAGCTGTACGGC 13823 29 100.0 37 ............................. AGTACTCTTGAGCTGATTTTTGTACTTGTTGCTGGCT 13889 29 100.0 38 ............................. CATGCAAGAAATCATTCATAACAAGGAGGTATGGTGAT 13956 29 100.0 38 ............................. ATAAGTAGTAAAAACGGAAGTCGAACGAGATGGTAAAA 14023 29 100.0 37 ............................. CGTAATAACTTGGAACAATGACATCATCATCATCATT 14089 29 100.0 36 ............................. TTTTCGAACGAGGCGAAGGGCGATCAATGGTACGCC 14154 29 100.0 35 ............................. TTTGTTTATAGTAAGCTTCGCGTTTTTGCTCGTCT 14218 29 100.0 35 ............................. TATTTTTCCGCTAGGCAAAAGCGACGACGTCGTCG 14282 29 100.0 35 ............................. AGTATTTTTCCGTCGTAGATATATCGTTGTGATTG 14346 29 100.0 35 ............................. AGGTGTGGCACGTTGAAAAAGACATCGTTGTCAAT 14410 29 100.0 38 ............................. GTGAATGTGATTTTTAACGGTAATACACGAGGGTCAAT 14477 29 100.0 36 ............................. TTTTTTTTTGCCTCAAGTGTACCCACTTTTTCCCCT 14542 29 100.0 40 ............................. CGATTTTATGCGTTAGGTTCTTTTCTTGTAGTCCGTTCGC 14611 29 100.0 35 ............................. ACAGCTGCATTTTTCGGTGAATTTAAGAACACACG 14675 29 100.0 37 ............................. TCTACAAGCAATTAGGAGCGGATCAGCTGGAAGGAGT 14741 29 100.0 38 ............................. TTTTTTAATCGGTGAACTGTCCCGATACGTTCAAAATC 14808 29 100.0 34 ............................. GGTCAACGCTGCACGGTTCCGAACACGATCGATC 14871 29 100.0 35 ............................. CGAATAAGCGTGGTCAAGTCACTTGTATCAACTTC 14935 29 100.0 35 ............................. TTTTCGAGAATCTCAAAAACGCCCTCTCGAACATT 14999 29 100.0 36 ............................. GCAAAGTGAAGGAAGCGGAAAAGCTGGACGAGGCAA 15064 29 100.0 35 ............................. CTGTTTCACGGGTGTGATGAAGTTGGATACTTTTT 15128 29 100.0 37 ............................. TCGCCTAACGGGACAACGCCGCTGATGCTCGTCAAGT 15194 29 100.0 36 ............................. AAAGACAAGCAATGCGGTGGCGAAGCGAGGTCGTCT 15259 29 100.0 37 ............................. AGTTTAGATGGATCGGAAATCTATATAACCGGGGATG 15325 29 100.0 40 ............................. AGGAACGTATCGAAGCAGAGAAGGAATATGCTCGCGTCAA 15394 29 100.0 37 ............................. AAGTTAAACACCGCTATTGGCCCGAATGTGTCGGCGA 15460 29 100.0 35 ............................. CAGAATGGTTCAAATACCAATGCCGGGACGAGTTA 15524 29 100.0 35 ............................. TTTTTTTTTGCCTCAAGTGTACCCACTTTTTCCCC 15588 29 100.0 37 ............................. ATTTTTTGAGTTAAAGAAATATTCGGCTTTGCAGATC 15654 29 100.0 39 ............................. CGCCTTGTTCCGTTCGACACGGGACAGGAGTTGTTCAAA 15722 29 100.0 35 ............................. ATGATTCAAACGGGAGAGTATCACAAATCACTTAC 15786 29 100.0 40 ............................. ATTGCAGACTCAAAAACGTATGCCCCATCTGCCGTCACCA 15855 29 100.0 36 ............................. TTGGATACTTGATGTTGGATTAAATGATTTTGCATA 15920 29 100.0 38 ............................. AAATCTCGTTGATCTCTTGGATGAGCTCGGTAAAGTCA 15987 29 100.0 35 ............................. GAAGCGGATCATGGATATACTCGCCAGCAAGACGC 16051 29 100.0 35 ............................. AAATTTTTTGTATGACACTAATTGTCGACTGGTAT 16115 29 100.0 37 ............................. GAATATTGAGAAAGTCATTCGATCGAACGAAAAACTG 16181 29 100.0 35 ............................. CGGCCTATCGCATTTTGCGTGAGGCGGCTGAATAC 16245 29 100.0 36 ............................. ATAATTGTGAGTTTATGTACAGCGGAGGGAATGGAT 16310 29 100.0 37 ............................. GAGACACTCGACAAAATGGTGAAAATGAGCGAAAACA 16376 29 100.0 35 ............................. TAAAAAGCGACTTTCTTGTACTCGATGGGATAAGG 16440 29 100.0 39 ............................. ATCTTCGATGCGAATTCCATCTTGTGCAGCACCTGTTAC 16508 29 100.0 35 ............................. TCAGCTGTGTATTTAGCGTTATATACGAGCGATCC 16572 29 100.0 37 ............................. GGCGGTTTTTCTCGCCGAAGTTAAACACCGTTATTGG 16638 29 100.0 36 ............................. AAGCTGGACGAGGTTTTAGGTGGGTTGCGTGCCGGC 16703 29 100.0 36 ............................. AAAGCAAACAAAGTGAAGCCGCCTGCATGGCTTAGC 16768 29 100.0 39 ............................. AAATGCTTGTAAACCAAAAATGCAATGATGCGCAGGTCG 16836 29 100.0 36 ............................. AGAAAAACGGATTGATAAGCTGTTAGGGGACTGAAA 16901 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 51 29 100.0 36 GTTTTATCTGAACGGAGTGGGATTTAAAG # Left flank : GATGAACGATATAAACCGCTGAAAGCGTGGTGGTGAACCATGTTTGTTATCATTACGTATGACGTAGCGGAGAAGCGGGTCAACAAAGTTTGCAAAAAATTAAAGGAATATCTCACTTGGACGCAAAATAGCGTATTTGAAGGGGAGATTTCGAAAAGTCTGCTGATGAAGTGCATGTATGAATTGGAGATGATCATTGATAAAGAAGAAGACTCCATTTACTTATACGAAGTAGAAAATCCGAAGAATATAAAAAAGCGGGTATTTGGTCAGGAAAAGAATTTTGATGAGTTGTTCCTTTAAGTTTAAGAATTTGCAGTGAACCGCATTTTAGCGGATAAATGGGGAAAAGCTTGATTTATCAAGGGAGGTGCGACATTATTTGCGCAACATAGAAAACACAATTACTACTTTACTGCAAAATGAGGTATAATTGTTGTGTAGGCATTAGCCGGAATTCCCTGCTACATCAATGAATATTGCTTTGTAACTGATAGGGG # Right flank : TTTGACGCGGGAACCGACGTTATATGTAAATTAGCACATTATTTCAGAATCCCTTTTTCAAATTATTTCAGGCGGATTCGGAAATAATGTGCAAAATTTTTGCGGATTGTTCCGGATTTTGCACATTCTTTCGGAACGTTTGCACGCTCTTTCAGATGAAGATTTCCAGCGCGCCTGATGGACCGATGGAAAAGAGAAAGCACAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGGAGTGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 2724-2497 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLD01000070.1 Geobacillus sp. DSP4a NODE_70_length_8719_cov_36.2514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2723 30 100.0 36 .............................. TTCGAATGGACCGAGCGCCGGGCTTCCCCAGGCTCC 2657 30 100.0 36 .............................. TAGACATCCATAGAAACAGACGTACGACGCGGAACA 2591 30 100.0 35 .............................. TTCAACGTCGTTGTAAGCTGTCTGTCAATGTATGC 2526 30 80.0 0 ...............GC.T....C.A..G. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 95.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAATCCGGCGCTGTCCGACGACATCATCCGTGTCGCCCGCTCGCCGATCCGCAAACTTGGGCCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCCTTATTCGGCAACGCCCCGCAAGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGATTCGATGATGCCCGCGATGCGGAAGCCGCTGCCCTTCAACAAACAATCGCCCAGCACGGGATCGAAGGCGCGCTTCGGCAATATGCAGGCCTTGAGAGTGGGCACCCGCTTGTGGCGGCGGTGAAGGACGAGTACGGAAGAATGGAGAAAAACAAAAACTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATATTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAACAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGTCAAAAGGGGAAAAGCTTGATTTTATGCGAATGGTTTGGG # Right flank : ACTATACAGTACAGCACAACTTTTTCTGTTCCCCATGCAGGATTTTCCCCCCCTGTTTGCGAATGGATAGAATCGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATCCACGAGCATATCGATTTCCGCCATTTGTCCTTCCTGTCCGAAGAACTGTTTACCGATGTCACCGCAGGTGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAACTGAAAGGAGAAGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTATGTGCAACCATCGTTTCCAGAGCGCATGTTTGTCTATTTCAGCCGTCTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCTATGAGGCCCTTCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAGT # Questionable array : NO Score: 8.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //