Array 1 215-422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINBO010000170.1 Escherichia marmotae strain C5-10 c_000000000170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 215 28 100.0 32 ............................ CGGAATTAAAAACCGTGGCTACTCTGCCGTTT 275 28 100.0 32 ............................ AGGCGGATTAAGCGGGAAGCGCAGCAGAACGC 335 28 100.0 32 ............................ AGACCAAATGGTCTGGCAAAACATTCCAGGAA 395 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCCGAGATTATGGTCGTATGCGTTCTGATCAATTATTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCAG # Right flank : GTCGAGCTGATCGACTTATGCCCCATCAGGCTGTTCACTGCCGTACAGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55204-54395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINBO010000175.1 Escherichia marmotae strain C5-10 c_000000000175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55203 28 100.0 32 ............................ ATATTCCGGCTCTTGAGAGCCACTCACATTGT 55143 28 100.0 32 ............................ CTGAATTGCGTCAGTCAATAACGGCAACTGCC 55083 28 100.0 32 ............................ AAAACATCTTCGCTTTTTTACGCTGTTTGTGG 55023 28 100.0 32 ............................ CGCCGCGCGCAGTGCCTGATAATCAATTTTGC 54963 28 100.0 32 ............................ TTTCGCTTCCAGCTCCGTGCGGTGGATGTACC 54903 28 100.0 32 ............................ ATCAATGATGGCGTGTCGAGCGTCTACATTCT 54843 28 100.0 33 ............................ AGAAATCCATGCCCAGTTGCTGATCACTTCAAA 54782 28 100.0 32 ............................ CCACACAATATATTCACACTGATGCCGGAAAT 54722 28 100.0 32 ............................ TAAACTTGAATCTATTTCCAGTTTGAAAGTGA 54662 28 100.0 32 ............................ CCACGGGTCAGCACCACGGCAAAAACGCATTC 54602 28 100.0 32 ............................ AAAGTGATTGGCCTTTCTGGCACTCCTTTCAG 54542 28 100.0 32 ............................ TCAGCAGTGATAAACCCGTCACCCGCGCAGCA 54482 28 100.0 32 ............................ TGTTTGAGAACCTTCGCCGCATGGGGCATCAG 54422 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACATCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : ATCCACACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 88-417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINBO010000352.1 Escherichia marmotae strain C5-10 c_000000000352, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 88 28 100.0 32 ............................ ACTCACACTGCACGAGTCTGTCAAATAGCCCG 148 28 100.0 32 ............................ GCCTGCGCACGGGATACTGTTTCCACTGCTGC 208 28 100.0 32 ............................ TTACTGATAGTGCCTCGTTTGTGCCAGCCGTA 268 28 100.0 33 ............................ GCAAAGGCATGGACGGCCGTCAAAAGCACCTCA 329 28 100.0 32 ............................ GCTCTTATGGCGAGTAACAAAGGTTGAAATGT 389 28 92.9 0 ....................T...C... | C [412] ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGAG # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37528-38697 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINBO010000281.1 Escherichia marmotae strain C5-10 c_000000000281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37528 28 100.0 32 ............................ TGCAAATCATAATCAGTGCCGCGCGCCCACAT 37588 28 100.0 33 ............................ TATGAAAGGGCTGATGGCGAACTCGTAATTTAT 37649 28 100.0 32 ............................ AAAAGCGCCGATTTCCTGGCGCGCCAGCTCGG 37709 28 100.0 32 ............................ ATCATTGCGGACGCCAGCAACCGCGCGGAGTC 37769 28 100.0 32 ............................ CTTGCGGCGGCGAACCGTAAAAAAGACGATGT 37829 28 100.0 32 ............................ AGGCGGCACCTGGACTGATGAGGACCACAAAA 37889 28 100.0 32 ............................ GGCAGACCTGGAATCACCCACAGCGAACGACC 37949 28 100.0 32 ............................ ATTTTGCCGACGTTATCCCACGCCGCATATTT 38009 28 100.0 32 ............................ GTGTCGGTGAAAAATTCCTTCAACGACTCTTC 38069 28 100.0 32 ............................ GCTCGATAATGTGATCGACATGCTGCGCGAAC 38129 28 100.0 32 ............................ GCTGACATCGCCAACTTTATCGAGCAACAGCA 38189 28 100.0 32 ............................ GGGCGAAATTTTGATTCACCGTGATGACCATA 38249 28 100.0 32 ............................ CCACAGAGCTTGAGTTATGGGCTGCGTCTGTT 38309 28 100.0 32 ............................ ACTAAATAAGTGGTGTCGTCGCTGCCGCCATA 38369 28 100.0 32 ............................ TGCGCGGGCGTATCGCGGCACGTCTGCGCAAA 38429 28 100.0 32 ............................ CGGAAGTTGCGTCGCGGCTGAGTCCAAACCGC 38489 28 100.0 32 ............................ TAAAATCATCGCGGCACAATAATGCGCAGTCT 38549 28 100.0 32 ............................ GAAGAAAAAACAGTGGTACTACCGCCCCGCAG 38609 28 100.0 32 ............................ TTCAATAGTGTCCGCAATATCGTCAACGGTAA 38669 28 92.9 0 ....................T...C... | C [38692] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAAGTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //