Array 1 139594-139753 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWHG01000001.1 Haladaptatus sp. R4 NODE_10_length_139766_cov_26.9624_ID_1043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 139594 30 100.0 36 .............................. GACGACGGCGTTTTCCTGACGCTGACGACTGATCCG 139660 30 100.0 34 .............................. AGTTGTCGTTGCAGTGAGAACAGCGATAGGCCTG 139724 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTCAGAAGTACCCTTGTTGGGTTGAAGC # Left flank : CTCCGTTCAAGCTCGCGATCTGGGTGACATTGTTGCCGTTCAGGATTCTCGGAGCGATCTTCGGTGGAAGTTCATAACTCTGTTTCGTGACGCAGGCTGATTCTCTCTTCTTTGACTATCATTTATATTTCTGGAGTTGTCAGAATCCAATGGTCGGAAACCACCGGTTCATTGATTCAGCGTCGAAGCAACCCTTGTGGTTGTTTTTCGGCGTTTTCAGATGTCTAATCACGTAGAGATTGAGCAACTTCTGGAGCGGAACCTAATCGAAAAATCGGACGAGAGTGTGACTTACTACCAAATCATACGAAGAAAGGGGCGGCAGTATCTCGCTGGCGAGCTCGACGCGACCGAATTAGAGAAAGGCGACAATTAATCGCTGAAACAAAAGAGAGGCATTATCTGTCGACCCCCCGGGGGGTAGCACAGAATTGAGGGTCGACGAAGTTCTCCTTCTGAATCCAAGCTTATTAGCCGCTGTAGGCGCTATATCGGGCAGG # Right flank : GGCCTTGCGTCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.20,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10461-10035 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWHG01000013.1 Haladaptatus sp. R4 NODE_21_length_10549_cov_35.186_ID_1065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10460 30 100.0 36 .............................. GACAGCGTACAAGACGGTTGAGCGGTAACCTACTAA 10394 30 100.0 34 .............................. GGCGGTAGCACGTCCATGAGCAGCAACATCACCG 10330 30 100.0 36 .............................. AGTTGGGACGGGACGATGGCGAAAGGACCCGACACC 10264 30 100.0 37 .............................. GATTTCGACTACTCGAAAGACGAGCTATCCTCGGTGA 10197 30 100.0 37 .............................. ACGGATTTGACGATTTCACCGCCCCGCGTTGCCACGT 10130 30 100.0 36 .............................. AACTATCGGTGGGGGCAGTCCTGGAATGCGGCCAAC 10064 30 90.0 0 ..............T......A......A. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 36 GTTTCAGAAGTACCCTTGTTGGGTTGAAGC # Left flank : CGACGTTGATAACCGATTACGTGCCGACCTCGGTCGGTGTCGTCATCATTCTCGCCGTTATGAGTGCGATCCTTTCGAGTCACTCCTG # Right flank : AGATGGATTCTTCTGGATTTGAATTAGGACTGTTTCAGCAGAACCTCCGTTGGTCCTTTCTCAACGAATACATACATTTATGAAACATAGTTATAGATATTGGTACGTGACAGTAAAGAGCACAATTGGCGGAGGTGGCGACTCGAAATGCGGATATTAGCTCGGCTTCGCGCACGAGCGGACGCCACCTACGATAATTGCTACCACCATAAGCTCAGAGGCCGCCTCTGGCGAGCGCTTGAGGGAACTGAATATGACGAGCATCACGATGAACAGGAGCCTACTGGATTCTGTTATTCGAATCCATTCCCTCCTCGTAATATGCAGGAAGGAGACAAGCGTACGCTTCTCGTTTCAGCAACGGATCGCGACTTGCTCGGAGCGATTGCTACAGATCTGGATAACAACCGCGAGCTCAATATTGGCGAAATGCCGTTTCGCGTGACAGAGATCTCAGCACTCACACCGGACGTTGGCGAACCAGGCACTCGCGGAGTCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.10,-5.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 529301-529141 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWHG01000028.1 Haladaptatus sp. R4 NODE_3_length_529312_cov_26.7524_ID_1029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 529300 28 100.0 40 ............................ GCGTATGGGATTGTGACATCTTCGTCGTTACCTCCGCTGA 529232 28 100.0 36 ............................ GCTCGAACGAACCTGTGTTGATGATGTTCTGCCATT 529168 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================== ================== 3 28 100.0 38 GTTCCAGAAGTACCCTTGTTGGGTTGAA # Left flank : AACATATGCAT # Right flank : CCATGATCTGTGCGAAGGTCCCACTTCGAGATGCCTCTGTTTCAGAAATACCCATAATCCTTCTAATAGCGGATACACTCACTAGGTGAGCATTTGCTCTGACCCCAGTGGTTTCGCGTAGCGAATCGAGTTCGCCCGGATATGAACACGAATCGGTCCCAACTCGTGTTCATATTCCGTCGTTCGTGTTCACGATCACTCCCTCGACCGCGCCGATCACACCGCTCGCCACACGTCTTTTATAAGCAATCGATGTTCCAGTAGCCGGAGAATGCGAGGAAATTCGGGTCGTGTTCACGAGCATGGCTCATCAACGGAGCAAACTCGAAACTTGAGAAATTACCCTAATATACAATTTAGGAAGAAATAATGCAGTCAATTAGTCTGAAACTCTTCCAAATCGCATATATACACATCGGTTGACCAGCCATTGGTTAGTATGACTCGAATCGAAGTTGAGGAAGGGGTGGAATTGTTCGTTCAGGACTGGGGGTCGGGTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGAAGTACCCTTGTTGGGTTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 170-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWHG01000007.1 Haladaptatus sp. R4 NODE_16_length_56836_cov_34.7208_ID_1055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 169 30 100.0 37 .............................. AACGCGATCTGGCTGGACGAACCCTCTCACTATGGCG 102 30 100.0 33 .............................. AAACCTCATTGAAGCAGGGTATCCCAATGACTA 39 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 36 GTTTCAGACGAACCCATGAGGGTTTGAAGG # Left flank : GTTTGAACCGGAAAGTGAGTTTCAAAACGCTAGTGCAAACTGATGTCTACAGTTTGAAAAAGCATATCTTGACTGATGAACCGTACCACGCAACGGCCCGGTGGTGGTGAGATGCAAGTGATCGTCGTATACGATGTCCCTGCCGAGAGAACACACATCTTCCGAAAATTGTTGCGCAGGCGGCTAGAGCACCTTCAGCAGTCAGTGTTTTTTGGAAAGCTCACGGACGGTCAGGTTACCGCTATGAAAAACGAAATCGAGGACAAGTTAGAGCCAAATGATTCGGTTGTTATCTTTGAGTCCACAAATCCCGCCGCATTCAACTTCACTACGTATGGTTCGAGTGAGGAACCAGGTAGTCGGTTCACTTGAGAGGGGGTTGATCCGCTGTGATTCTAAATTTCCATCGACCCCAAGGGGTTGAGAAGGAATTGGAGGTCGATGGAAATTTCTTTGTGAAACCAGCGTCAATACGCTCTCACCCGTCCAAAATACGGCGG # Right flank : GGACGCGACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCATGAGGGTTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 56816-56264 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWHG01000007.1 Haladaptatus sp. R4 NODE_16_length_56836_cov_34.7208_ID_1055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 56815 30 100.0 37 .............................. GACGTTTCAAATCAAAACCATGAGCGACATTGCCATC 56748 30 100.0 41 .............................. ACCTTCGAAGCACTCCGCGTCCAACTCATCGAACTCACCTC 56677 30 100.0 34 .............................. GGATTATCGCCGTCTACCGGGTGCAAGGCCCCGG G [56671] 56612 30 100.0 36 .............................. AACGCTCGTTGCCCCAACTCATCAACCAAGATGAGT 56546 30 96.7 30 .............................A CGGTGGGGTGCTGACTTCACCTTCAACGGC 56486 30 96.7 34 .............................A CGGTTCGTTGGGTGAGATTACTGGCATTTCATCG 56422 30 96.7 36 .............................C AAAGCGGCGATCAGAGGCCAGGTCAACACCATCGAA 56356 30 96.7 33 .............................A CTGGCTCGGTTGGCCAGTTGAAGAAACTCCGTT 56293 30 93.3 0 ..................G..........C | ========== ====== ====== ====== ============================== ========================================= ================== 9 30 97.8 35 GTTTCAGACGAACCCATGAGGGTTTGAAGG # Left flank : CGCAATGCAACGAGTCCGGT # Right flank : AATTCGATTCCTTCCTGGGTGGATGTCGTGATCTGCTCGACTTCGAAACCATCGAGCGTTTTCTTTTGAGACATCAGTTGGCAATTGGTTTGAGAGATCAGTGACCGTAGCGCTTGTGCGCTTCGTCAATTGGCAATACCAAGGAGACCTCGACGGCATTCTCGTCCTCATCAATGTCGTAGAAGGCCGTCCATGTTCGACCAATGTGCAACCGATATCGGTCTTCACCCTCTATCGTCAGTTTCTCTTTATCCCCCGAACCACGGCCGGGGTACGGTTGTGAGAGCTTCGTGAGGTTATCTCGGACGATGCGCTCGGTCTTCTTATCGGCTTCTGCGAGAAAGCTACGCACTTCCTCGGAGACCAACACGACGTAGTCGTCAGCCATCGGTTATGCCTCGTCAAGTGGGACGAACTCGCTTTCGTCTTCAATCTGCTTCATATCTCGGAGGAGACGGCGTTTCTTGTGTTCTTCGATGAGTTCTGCCAGTAATTCGTCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCATGAGGGTTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-B [Matched known repeat from this family], //