Array 1 2394162-2388534 **** Predicted by CRISPRDetect 2.4 *** >NC_015555.1 Thermoanaerobacterium xylanolyticum LX-11, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2394161 30 100.0 37 .............................. TTTCCTGAACTGAAATATATTTCAGTTCAGGAATTTC 2394094 30 100.0 37 .............................. TATGCCTCCTTTTATGCAATGGATGCTGTTGGTACAT 2394027 30 100.0 35 .............................. GAAATTATTTACTTGATGTTGAAGAAGTTGCGAAT 2393962 30 100.0 35 .............................. TTGAAAATTATAAAAGCAACGACTCCTGAAGAAAA 2393897 30 100.0 37 .............................. ATTTATTTTGTAATATAACAAGAACAAGCATTAAAGA 2393830 30 100.0 36 .............................. ATGTACATGGTTGGTAATTCACCTAAACTTAAAGCT 2393764 30 100.0 37 .............................. TTATTTCGCTGTTTTGTATGTCCCGTTTAAGCTGTAA 2393697 30 100.0 36 .............................. TATTTAAACGTTAGGCCTCCTTGCGACCTGAAAACT 2393631 30 100.0 35 .............................. ATCGTATCCCCTGCTTTGTTGACAGGAGTATAGCC 2393566 30 100.0 38 .............................. ACAGATTCCGAAGTAGAAGAACATCCTGAAAAAGAATA 2393498 30 100.0 36 .............................. TAGTTGGTCCAATGGGAGCAGGAAAAACAGAATATG 2393432 30 100.0 41 .............................. ATGATAATAAAGTATTGGAACACCTTGAGAAGCAACACAAC 2393361 30 100.0 39 .............................. CCTGTACTTCCTTTTTGTAACATAGAATTACCTCCTCTA 2393292 30 100.0 35 .............................. TATAATTACAATTGATGACACAGGAACAATTGTAG 2393227 30 100.0 36 .............................. TGTATAGGTTTACATTTAAAAGATAAAATAAAAGCG 2393161 30 100.0 37 .............................. CCAAAAACCCTTTGGAGGATAGCCCTCCTGATAGTTT 2393094 30 100.0 39 .............................. AGGCCTTATGCATAACCTCAAAGTCGGCCATACTTCTAA 2393025 30 100.0 36 .............................. ACTTTATATTGAACATGCACTCCAACCACAATCAGC 2392959 30 100.0 38 .............................. TAAAAGTCTTGGCACTTATAATTTGAGTAATGTTACTA 2392891 30 100.0 36 .............................. CCTTTACATTACTAATCCATACATCGCCAATGCGTA 2392825 30 100.0 37 .............................. TTAGATTGGGGTGATAAGTCGAAGGTTCTTTATGGAG 2392758 30 100.0 35 .............................. TGCATAAGAATAAAAATATTGAATATGCTAATAAT 2392693 30 100.0 35 .............................. TTCATCATAGGAATTTGTCGAGAGTAAGCGATTCG 2392628 30 100.0 36 .............................. AAAAAATCTATTATATGCGTCCCAGTTCTGCCGATA 2392562 30 100.0 38 .............................. CTTTCACCTGCTTTGAAAATACACCACTCTCCAAACAA 2392494 30 100.0 38 .............................. CCACTACCCCTATCTTCATTAACAAAAACAATATTTCG 2392426 30 100.0 37 .............................. TATTCTTTCAAAAGTTTACCTCTGCCTCTTTTACTGC 2392359 30 100.0 35 .............................. TACTCTCCTTTCAAAATGGTAAATCTTCGTCTATA 2392294 30 100.0 36 .............................. CAGTTACAAGAGCATTAATACCATTCATGATAGCAA 2392228 30 100.0 35 .............................. GCATAACATAACCATTGCATTACATTGCCCTGCCA 2392163 30 100.0 36 .............................. ATGTACAATGACCCAAATGCAATGGCAGTAATGAAA 2392097 30 100.0 37 .............................. AACGGAACACCGACAGCAAAATTTACACTTGCAGTAA 2392030 30 100.0 36 .............................. TCTAACTTGCTTCTCAAGTTCTTAATCTTTAGCTGG 2391964 30 100.0 38 .............................. GATATACCGGAAACGCTTAATGTAACCTTCTTCTCTTT 2391896 30 100.0 36 .............................. ATCTTTTCGATTTCTACCATTTTCTGCCCTCTGTCG 2391830 30 100.0 36 .............................. CAAAAAGATTATGTTTTTGCTTGAAGTAAATGTTAA 2391764 30 100.0 39 .............................. GACCCATACTGTGTTATGCGTGTTACAAGTCTTGGGTCT 2391695 30 100.0 40 .............................. TTCTTGCTGCTGGCACTGGCTTGCCTGGAATGACTATTTT 2391625 30 100.0 37 .............................. ATTTGCCTTGTTGTCGCTTTAATTCCTTGTGAATACA 2391558 30 100.0 38 .............................. TTTGCTATGGTTGGCAAGGCAACTATTGGAAAATACAA 2391490 30 100.0 36 .............................. ATGGCTACAGACGTTTCTCCTTTTTTAGCAAGACGT 2391424 30 100.0 35 .............................. TCATACGCAAAGACCTCTTTTTTAGGAAGTCTTTG 2391359 30 96.7 36 .............................A ACAATATACCGCTTCTAAAACAATTATTTCTGAATA 2391293 30 100.0 36 .............................. TTAGTAATTTTTTGCAGTCTTTCAAAATATATATCA 2391227 30 100.0 36 .............................. GTTGGATTTGGGTAGAGGACAAACGTTTGCTATAAA 2391161 30 100.0 36 .............................. TAAATAGAGTGTCTAACGGAAATGATTATATTGCAA 2391095 30 100.0 35 .............................. TAATTTTTGTCACGTTTGTAATACTCCACTTCAAA 2391030 30 100.0 37 .............................. CTGTAAGTCCTTCAAGTGGTGATGTTGTGCTTGATAG 2390963 30 100.0 38 .............................. ACTTTAATTCTTCTTTGCTAATTTCATTTATTTTATTA 2390895 30 100.0 36 .............................. GTTTCTTTATATTGAATAACGTCATAATTAACAATG 2390829 30 100.0 36 .............................. TGACGATGTTGTAAAAGGATTAAATCTCTTAGAGAA 2390763 30 100.0 36 .............................. TGTCTATTTCTTTATTTGTCAAGTAATTGTCTGCGA 2390697 30 100.0 37 .............................. ACAAGCGAAGAAGTAGTTTTTAGCAATATATCAAGAT 2390630 30 100.0 37 .............................. ATAGTGAGGTGGATAAAGTGTTAAAATTGGTTAAGAG 2390563 30 100.0 38 .............................. CTGCGCACCTCCAAAAAGCTTGCGAGTAACAAGAATAA 2390495 30 100.0 35 .............................. TACATAGAATTTGTGCAAGGCTGGAATAATATTCC 2390430 30 100.0 37 .............................. AATACAAATCATCGTTTTTGTCGTTGATAATTTTTGG 2390363 30 100.0 37 .............................. TAAGTCTGAACTTGCGTTATATTTGGAACAGAAGGCA 2390296 30 100.0 37 .............................. GGATCAGAATAGTGAGTAAGACTAACAGTCAAACCAC 2390229 30 100.0 37 .............................. TTTCCAAATACTGGTATAGCTAAAAGCAGGATATATA 2390162 30 100.0 37 .............................. TACGCAAGTCTTGAGCAACAAGAATTATATCATAGCC 2390095 30 100.0 36 .............................. TTTGTATGTTGACATTGTGTTGTGCGTGTGTTATAA 2390029 30 100.0 35 .............................. TCGCTTTCGGACATATTAAATGTTGTGCTTGTAAA 2389964 30 100.0 36 .............................. ACAGTAATTGGCTTGACAAATACGGCGTGAGTGAGT 2389898 30 100.0 37 .............................. CGTGGAAGAAACCAGAATATAAATTTATCGTCGACTA 2389831 30 100.0 37 .............................. CAGTATGGATATATATAAAAATGCCTTAAAAACCTTG 2389764 30 100.0 37 .............................. AATTACATTACTAATGACAACAGAGACACAAGAGCCT 2389697 30 100.0 37 .............................. GAGGCACCCTAAAGTATTCAACTTTTGTAGCAACTTT 2389630 30 100.0 36 .............................. ATGTTATATTAGGATCGTTTATGTTTGCTGGTGTAA 2389564 30 100.0 36 .............................. TACCCTCAGTAACCGCTGCAAACACTGCATCAGCAG 2389498 30 100.0 38 .............................. CAAAAAATGACTTTTTAGAAAAAGAAGAAGAATTAGAA 2389430 30 100.0 35 .............................. AGAAAAAAAATAAAAGGGGATAAAAAGATGCAAAA 2389365 30 100.0 37 .............................. CTACTGCTTTTAGTGGTATGACAGATCAAATTGTTTC 2389298 30 100.0 37 .............................. TTTCTATCATCAAAAGTATAGTTAAGTCTTAAATAAC 2389231 30 100.0 37 .............................. CCAACAAAGACAGTTTTAACGTCACTTTTGCAAGGCA 2389164 30 100.0 39 .............................. TTTAAAAATAGGCAAAAAAATAAAAGAGGAATTTTATTC 2389095 30 100.0 35 .............................. AGCTACAAAGCTGCCTTTATTAAAAAACATCCAAA 2389030 30 100.0 36 .............................. CAACAACGCAATCAAAAACTTAGAGCAACTTAAAAT 2388964 30 100.0 37 .............................. TTTGCAGGCGATGAGTTAAGCATCAGTTTTACGATAG 2388897 30 100.0 37 .............................. TTTTTTAACATTTTTATCAATCTCCTTTTTTAAAATT 2388830 30 100.0 36 .............................. ATTGAAATTATAACATATTTCATTTTCAAAATCTCC 2388764 30 100.0 36 .............................. GCAATATGGATATATTTTTCTAAAGCCTCTACATCC 2388698 30 100.0 38 .............................. TACGAAATATTTGTTTCGTATAATAAGTTTTTTAAAGC 2388630 30 100.0 37 .............................. ATTCTAGCTTTATATAGTCTTTTTTCTTCATCGTTCA 2388563 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 85 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : GTACGACAGTGATGATGGTATGCCAAGTATAAGCAAATTTAAACTTATTGATGATGAATATTATAAAGTAGATGTGTTTATAGAGTATAACGAAGAAGCAATAGAGTTATGGCAAAGGTATATTGACCTTAAAAAAATAAAAAATTTGTTTAAAAGGCGGAGTATATTTGACGAATTTAAAGCTGATTTTTATAAATACGTGATATCAATACCAGAGAAAACAGAAAACATGCCTGCAGAAGTAGAAGGCTTCAAATATGTCAATGCTGCTTCTTTAAAAGATTATTACGATAGTGAAACAGGGTTTAAAACGAGCGATGTATTAAGCATTTGGTGAATGTCGTCGATGTACAATAGTGCAAAAAATGCTGGATATCGACGACACATTGTCATAACGATAAGTTGAATTTTCGGAAGTTTGTGGTATAATAAAGTCATAAGCTTTACACGAGATAAATTTTATGCAAGATAAGTGTATTGAATTTTCTATGTTCTAACGT # Right flank : TAATTTTTTATTGCTGCATTGGTTACGAGGAGTTGAGGCCTAATGGACAAAAAACATTTAATTAAAGGCTATGATATTTTTGTCAATGGTGAATGGGATCTCAGTCCATTTGAACATTTATATGAGTTAGAATGCAGAGATGTTATTCAGGAACATATTAATGACTTTAATGAAACAGAAAAAGAGGAAATTAAAAAGCTGGAGGAGATTCTTGTTAAGAGAGCCCCACTGTTTTATAAGGCATTAAAAGGTTTTTTAAAAGCAAAGCAAAAGAATAAGCCTAAGTCCCATTGGTGGTGGTATCTTGATGAAATAGCAGATAATAAGTTAAAACCACAGATTAAATGAGTTTTTATAGTTTCCTATTTTTAAGAAGGTGTTTTTATGTATGGCTATGAAGATGTTACAGGTTCATTGATACAAAGTTACAGCATTTGCAAAAGGCAGGTATGGCTTATGGCCCATCAGATAATTCCTGACCAAGAGCATCCATACATTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2458852-2457993 **** Predicted by CRISPRDetect 2.4 *** >NC_015555.1 Thermoanaerobacterium xylanolyticum LX-11, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 2458851 30 100.0 36 .............................. TGGATATTGATTTTAGTTGTGTTAAAAGTGATTTAG 2458785 30 100.0 36 .............................. AAAAGTATTGATTTTAGTAGAGCTGGCGAAAGGAAT 2458719 30 100.0 34 .............................. CTATTTTATGCAGCAGCAACAGCCACAACTGCAA 2458655 30 100.0 37 .............................. ACAGGTATACCTGCATTGTCTTTTAACATTTATGTTG 2458588 30 100.0 36 .............................. GTGCTATTTCTGCATCTGTTCTTGCACGGTTGGAGA 2458522 30 100.0 36 .............................. ATGGAAATGCTATTCCTGCAAGTGTGCCGACGAGTA 2458456 30 100.0 35 .............................. GGAGCACCTAATAAAATATCGCCAGCCGCAGCTCC 2458391 30 100.0 35 .............................. TACTGCTATCATTGGATTAGCAATAACAGCTGCAA 2458326 30 100.0 39 .............................. GAATATCTGTGCTGTCGTATTAGGTTTCTCATATTTTTG 2458257 30 100.0 71 .............................. CTGTCTATTTCTTCTTTTATTTTTTTAGTGCAAATGTCCCGTATTTCATATACCTTGCTTACTGCTTCGTC 2458156 30 100.0 37 .............................. TATAATAAGAATTGCGTCTTTATCTGGCATACTTTCA 2458089 30 100.0 37 .............................. ATGTGGATTAAGTTCGCTTCCTCTACTGTCAAGGCTC 2458022 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================================================= ================== 13 30 100.0 39 GATTTAATCTAACCATAGTGGAATTGAAAC # Left flank : CTTAACGAGGACGAAATCATTCGTATATACGGGAAGCGCTGGGATATAGAAGTCTTTTTCAAAGTGTGTAAATCATACTTGAAGCTCAGCAAGGAATGCAATTCATTATCTTACGATGCGATGACAGCACATACAGCAATCGTATTTACCAGATACATGATGCTTGCACTAGAGAACCGTCGATCATCAGATTTACGAACAATGGGAGAGATATTTTACTACATACAGGATGAAATGTCCGATATTACGCTGATTCAGGCTTTTCATCTACTTATGCAAGTATTCATAGATACAATAACAGATAAACTATCGTTATCTTCAGAACAGCTGGACCAATTACTTGATGCTTTTATGGCTGCGATTCCCAAAGAACTTAAGGAAAGACTTCCGAAGTGTGCATAATTGTGTAAATTACTATTACTTTTTTCTGGCAAAGCATTAAGTTTTCAAGGAACAGAGTAATTATTTATGTGCGAAGTTTTAGTAAATTATATTACATA # Right flank : AAAAATAAAATGTCGGATTATGCTTTAAATAAAAAACATCTTATAGATCTTAGGGGCAAAGATAAAGTTATTGTTTTCGAGAAGGCGTGGGAATATAATAAAGACAATTATAAAGATTTAATCAAGGTCGTTAAGGATAATCCTAATAATTACCCAGCTGTACCTAAGGGTGAATTAGAGTATGGTAAATCATATGAAATTACTATGATGATTAAAGGATCTAATGGTAAAACTGTGAAAATAAAATTGTCGGATAATAAATAAAGGTTCAGATATATCACGAGTGACAACAATTTATGTTGATTGAGGTAATAATATGGAAATAGATGAGTTAGATGTTGTAAAATTAAAAGACGGACGAGAGGGGACGGTGGTTCATAAATATCCTGCAGGTATCTTACTGCAAGCATATGAAATTGAATTTGATGATGGTGAAACTGAAACGATAAAAGAAGATGAGATAGATAAAGTATTATGGATAGCAAAAGCTCATTAAAAAA # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTAATCTAACCATAGTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 2469715-2460483 **** Predicted by CRISPRDetect 2.4 *** >NC_015555.1 Thermoanaerobacterium xylanolyticum LX-11, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2469714 30 100.0 36 .............................. TTAGCATAAGTAGAATCAATAACAGATGCATAAACT 2469648 30 100.0 38 .............................. AAACTCAGTGACAGTAAAAACTGTAAAAGGTAATATCC 2469580 30 100.0 37 .............................. GTATACAAGGTAACACTCAAAACAAATCACTCTCCTA 2469513 30 100.0 36 .............................. TTTAAAATATATGCTCTAGGAATATTAATAACAGTA 2469447 30 100.0 36 .............................. TGTACTTTTTGACTATTTCTTTTAGACTTTCTGAAA 2469381 30 100.0 37 .............................. GAAGAAGGCGAAGAAGAAGGTTTTATACTTGTAGGAG 2469314 30 100.0 36 .............................. GTCCTTGTCAGTAAAAATAACAACATCTGCTTTTTG 2469248 30 100.0 34 .............................. ATATTAGGAACAATAAGAGCAGGTGAGCCAATGT 2469184 30 100.0 37 .............................. TGCTTCTGGTACGCTGCCCTCTGTAAAGTATTGAAGG 2469117 30 100.0 36 .............................. TAGCTTGTCCTCTTGTTTTCTCTCACCTTACAGTTC 2469051 30 100.0 37 .............................. ATTTATTTACGCTGAAATATTCTGTCAAGTTCATATC 2468984 30 100.0 36 .............................. GCGTATTCAATACCCTGATTTCTGAGAAGCAAATTT 2468918 30 100.0 35 .............................. CGTAATTTCTGGAATAAGAAGTATATTTAACGGTA 2468853 30 100.0 35 .............................. TTTACAAAGATATTTACAAAGATTGTAGGAATACA 2468788 30 100.0 38 .............................. ACAGTATTACACAAAGTTTTCAATGCGATGGACAAACA 2468720 30 100.0 36 .............................. ATAGACGATGATTGGTTCGATGAACTTGCCAGAGAG 2468654 30 100.0 36 .............................. TCTTCTTCGCCTTCTTCTGGTATCCATTTATAGTCT 2468588 30 100.0 36 .............................. TGGAGCAAACAAAAAAGCCAATACATACAAACTTTT 2468522 30 100.0 37 .............................. AGTAAAACAGGCGGTAGCAAAAGGACTTTTGACAGCA 2468455 30 100.0 37 .............................. AAAGGCGATGAAAAAATTGACATTGAAAGTGGCGTTA 2468388 30 100.0 35 .............................. AACAAACATTTTCTAACAACAACTTTGTCGTTTAA 2468323 30 100.0 36 .............................. CATATCTGGCGTTACTTTAAATCTCTTTATGTCTCT 2468257 30 100.0 36 .............................. TTATTATCATAATAGGCTTCTTTTGTTTCAGTTATT 2468191 30 100.0 35 .............................. TTAATCCTCTTCATCTTCGATTTCCTCCTCTTCAA 2468126 30 100.0 36 .............................. ATAATTTCTTGTGTTGCTAAATATGAATCTGGCCCT 2468060 30 100.0 36 .............................. TTGTGATATGGGATAATATGACGACAAGCTATGTAG 2467994 30 100.0 37 .............................. GACAAAATATATAAATTTAGTGACATAGTTGATTATG 2467927 30 100.0 38 .............................. TAGCAAATGATAGCATGATAACCTAACAAATATTTATC 2467859 30 100.0 35 .............................. TTTATAAAGCCATTTATCATATCTTTGCCCCATTG 2467794 30 100.0 36 .............................. AATTGATTTAATTGTTGCTGTAATGTTTTTACAGCA 2467728 30 100.0 36 .............................. TTCTTCTTCTGAATAACCACCTTTTTCTCTTTCACC 2467662 30 100.0 36 .............................. TACGCAATCGGAATTTTAGTTATATTTTTAGGCTTT 2467596 30 100.0 36 .............................. AAATTTTCGACTTACAAATATCGTCAAAAACAAGAA 2467530 30 100.0 37 .............................. AAAATGCTAAAGTAAATAATGCAGCAAAAGAAAGCAC 2467463 30 100.0 36 .............................. ATCGCTAAGAAAAATGACCTGACAATGGACAAACAA 2467397 30 100.0 37 .............................. GAGTCTCGACAAATTCTAATATCTGGGAAAGGAAATG 2467330 30 100.0 36 .............................. TTATATGATCTTCAGGACGTGGCGATTTCAAAATTC 2467264 30 100.0 36 .............................. GGGAGCAAAGGCAAAATATCACAAATACAAAAAGGC 2467198 30 100.0 36 .............................. GAAGACGAAAGGATAGATGTATTAAAAGATAGCTAT 2467132 30 100.0 38 .............................. GATTCTGCTTTGTTTCTCAAATACGCTTTTGAATATTC 2467064 30 100.0 36 .............................. TCGATGTAACCAATACAGCCTTACAGTCATGCGGGT 2466998 30 100.0 37 .............................. CCTAACAATCATATATATAACTGTTCCTATTACTGCT 2466931 30 100.0 36 .............................. AACCTTCACTCGTAATTCTGTTGCCTACAAATCAGG 2466865 30 100.0 36 .............................. GAAGAAATCGGCGAAAGAGTATTTATTCAGTCATCT 2466799 30 100.0 35 .............................. TTTTTACATTCTTCTTCTATTTTCTTTTTTAATTC 2466734 30 100.0 37 .............................. GTTGTAGCTTGGAAAAAACTCGCAGAAATTTGCAGTG 2466667 30 100.0 35 .............................. TCATTTTCTGCATACGATACTACTATACGTATCGC 2466602 30 100.0 35 .............................. GATGATTTGTTAACTTTTTCTGTAAATCCAAGTTC 2466537 30 100.0 38 .............................. GTGAATGGTCTTGCCTACTGCTATTGGCTGGTGCATTA 2466469 30 100.0 35 .............................. TAAGGTGGCAATGGTGATAAATAATTACCTTCCTG 2466404 30 100.0 36 .............................. AAGTTAAGCGAATATAGTCTCGTTGATAACCCAGCA 2466338 30 100.0 36 .............................. TTGTCCAAGGCCCATCAGCCTTAGCTATAACTTGTA 2466272 30 100.0 36 .............................. CTTTACCGCTTCAAGCTTTCGCTTTTCGCTTTAGTA 2466206 30 100.0 36 .............................. GAAGAAAACAGTTGGTATTCCACATGCGAAGATGCA 2466140 30 100.0 36 .............................. TCTATATCGCTGCACAATTGCTGCTATATCTGATGG 2466074 30 100.0 36 .............................. CCGCTTGATGACAACAGCTTAATACAGAAAATGATA 2466008 30 100.0 36 .............................. GTGTATAAAGGTCTCCCTTCTATTCTTGTTTTGTAA 2465942 30 100.0 36 .............................. CATCGATATATTTGCTCATAAACCCAACTCCTTTAA 2465876 30 100.0 38 .............................. TTGCTGCGCTTTGCATTACTTTGCCTTTACATTACTAA 2465808 30 100.0 36 .............................. TTTGGCATAACTTCCTCCAATAGAGAAGGCGCTTAA 2465742 30 100.0 36 .............................. GCACCTACTAACATAGACAAAACAGTCATAACACCT 2465676 30 100.0 36 .............................. GCGTTTTTTAAAAATCCTTTTATGTGGTAGTTGTAA 2465610 30 100.0 35 .............................. CAATTTGTATATTGCCATTTGTTTGAGCGTTATTA 2465545 30 100.0 35 .............................. AAAGGAGCACCGGCAGCACACTGGAAAGCAATCAC 2465480 30 100.0 36 .............................. ACGACTTTTTTGCAAACTTCATTGTTTACGCCTCTC 2465414 30 100.0 36 .............................. GAAGAAGAAACAACTGTAGCATCAAAAGAAGATTTA 2465348 30 100.0 37 .............................. TAAGATTCACTTGACAAATCAATACCATAATATTTTT 2465281 30 100.0 35 .............................. TATGTTATATCTTCTGGAACTGATTATCTTCTTGA 2465216 30 100.0 36 .............................. GGATTTGCAAATTTACGAGCAACAACAAAAAGCATA 2465150 30 100.0 37 .............................. CTGCCTCCCGGGAATGTTTTTAATCATCTCTTTTTCG 2465083 30 100.0 37 .............................. GTACCAAACCTCGATACATCTAATGCCACTTCATAAG 2465016 30 100.0 36 .............................. TCGGAACCCTGCTCTATCAATATTCTGTCTATTAAA 2464950 30 100.0 36 .............................. CAATTTGAGCCATTATTTTATTTAAAGCTGCTTTTA 2464884 30 100.0 37 .............................. ATTCAATATGGCTCTGTAATCTGACTTGTACTTTTTA 2464817 30 100.0 36 .............................. TTGTGATCCTTTTGCAATGATCTGTATTTTTAAGCA 2464751 30 100.0 37 .............................. TGCCATCTTTAAGCAGGAATTCATTATTTGCGAAATC 2464684 30 100.0 36 .............................. ATTTTTTATATTCTTTTTTTAACTCCTCCAATGTTT 2464618 30 100.0 35 .............................. TATGAGTGTGTAAACATGATAGAGAACTGGAGAAA 2464553 30 100.0 36 .............................. ATTTAAAAGATACTACCTTGCCTAAAATTCTTATAT 2464487 30 100.0 38 .............................. TGATAAAAAGTACCTGCATGCGGTAAAAGATGAAATAG 2464419 30 100.0 35 .............................. TAATCTGTAAGCAGTTTAAGCATATTGCCAAGAGC 2464354 30 100.0 36 .............................. ATTTAAAAGATACTACCTTGCCTAAAATTCTTATAT 2464288 30 100.0 38 .............................. TGATAAAAAGTACCTGCATGCGGTAAAAGATGAAATAG 2464220 30 100.0 36 .............................. TATCTCACCCCAAGTGCCATTTATTACTTGTTCTGG 2464154 30 100.0 36 .............................. AAGCGTATCGCCTGATTTCACGACATAACTATTAGG 2464088 30 100.0 36 .............................. TGCAAAATATACCAGGATAGTGGAGGTATAAGAAAA 2464022 30 100.0 36 .............................. GATGTAACAGCAGATGAAATAAAGGCAAAAACAGAT 2463956 30 100.0 37 .............................. TAAGACCTTCGGCTTTTATAGCCGATGAAATTGGGGC 2463889 30 100.0 36 .............................. GACTTAGCACCTCTTAACTTTGATGATCCAGTTGCT 2463823 30 100.0 35 .............................. ACAAAAAATGAACAAATTAAAAATGCTATAAATGA 2463758 30 100.0 36 .............................. TTGGTATTTCGGCGGTACTACGAGAGAGTATAAAGA 2463692 30 100.0 36 .............................. ACGAATGCAGTCTGTGAAACATGCCAGGAATTGATT 2463626 30 100.0 36 .............................. TGTTCTGTCTCTTTTACGCTGCCTCCCCCTCCTTCA 2463560 30 100.0 35 .............................. GCTCATGTGAGAAACGCACTTGCAAGATTAGACCA 2463495 30 100.0 37 .............................. CTTTTTCTTTTAGAAATGGATGTTTTTTGTATACTTG 2463428 30 100.0 36 .............................. AACAAAGCAGGTAGGCGGTACAATTTATATTGAATT 2463362 30 100.0 37 .............................. GTATGTAAAACATGAACTGAAACTGCATTACTATATC 2463295 30 100.0 36 .............................. GCATTTCCTTGCTTCTAAGTATGATTGATACAAATT 2463229 30 100.0 36 .............................. AATTTATATTTTATAAGTCGTTCGTTTACGCCAAAA 2463163 30 100.0 36 .............................. CAAATCCAATCCCCAAGTCGCTGTATCTACAAAACA 2463097 30 100.0 36 .............................. CTACCATTATTGACGGCATACCTAAATCATCGAATA 2463031 30 100.0 36 .............................. AATGTCGCAAGGCCATATTGTGCCAGTTCTGCTCCG 2462965 30 100.0 36 .............................. TATGGTAGAGAAAAGCACAGAAGAATTAAACGAGGA 2462899 30 100.0 36 .............................. GAAAAAATTCAAAAGCTGAAAAACAGTATAGCAGTT 2462833 30 100.0 36 .............................. CAAATCCAATCCCCAAGTCGCTGTATCTACAAAACA 2462767 30 100.0 37 .............................. AGCGAATTTAGACACCATCCCCTCGTTTTTAAAGGTA 2462700 30 100.0 37 .............................. AAAAACTTTACAAGAGGCTTTGAATTCTCTGACGTAA 2462633 30 100.0 36 .............................. AGTTCAACAAATGTTTCTCTAAGTTTGCATTTCGTA 2462567 30 100.0 36 .............................. AAATAATCTACAACATTTTTTGCACCTAAATTATTA 2462501 30 100.0 38 .............................. AAGAAGGTTATAGCTTATATACTTCCGACAGATGCAGC 2462433 30 100.0 36 .............................. GCATAAGTGAGGCATTTCAGAAAAGAACTTTTAAAA 2462367 30 100.0 37 .............................. CGTCAAATGTAGTAAAATCAGCTTTATCTTTATATTC 2462300 30 100.0 37 .............................. AAGCCCATGTACATCGCTTTTTAATTCAAGCGTTCCG 2462233 30 100.0 36 .............................. GCATAAGTGAGGCATTTCAGAAAAGAACTTTTAAAA 2462167 30 100.0 36 .............................. ATAGCCATGACGGCGGTTTCGCCGCTCTTATATATG 2462101 30 100.0 35 .............................. ATAATTTATCTCTTCCAATACCAGAGCATTTTGCT 2462036 30 100.0 36 .............................. TTTGTTGAATTTATAAGTGTAACTGCTTCAGATTCT 2461970 30 100.0 37 .............................. AATTTATACCCATCATCAATATTTCTCTTTTCCAAAC 2461903 30 100.0 35 .............................. ATGCTGTAGTAAAATCTATTGCTGTTGCTGCCAAA 2461838 30 100.0 36 .............................. GCAGATCTCATAAAAGTTGATACAGTAAAACCATTA 2461772 30 100.0 36 .............................. TTGTATAAGTCATCAATCAACAATACTGTTGCATTT 2461706 30 100.0 37 .............................. AAAACTTTATTTTCGCCTGTCCGCACACAATATCCGC 2461639 30 100.0 37 .............................. ACTTAAAGCTAAAGATGTACTTGCACAGGCGTTTTTA 2461572 30 100.0 36 .............................. TGTAAAAAATATAATCTGATGTATAGCCATAATGGC 2461506 30 100.0 36 .............................. CCAGTTGCATAATTAGGTTGTGCTGCACCCAGCGCA 2461440 30 100.0 37 .............................. TACGATACAGTACATCACATAGAACCTATTAAGGTTA 2461373 30 100.0 36 .............................. TTTTTCATGCAAATTTTCTAATGTCTCATAGAAATT 2461307 30 100.0 36 .............................. TGTTACAGATCAAAATGGTCAGGTCATACAAGAAGG 2461241 30 100.0 36 .............................. GAAAAGTACATGAGATCACGTCAGAAATTTTCGGTA 2461175 30 100.0 36 .............................. ATGCTTGCTACTGGTGCTACTATTGTAACTAACCAG 2461109 30 100.0 37 .............................. TACGATACAGTACATCACATAGAACCTATTAAGGTTA 2461042 30 100.0 36 .............................. TTTTTCATGCAAATTTTCTAATGTCTCATAGAAATT 2460976 30 100.0 36 .............................. TGTTACAGATCAAAATGGTCAGGTCATACAAGAAGG 2460910 30 100.0 36 .............................. GAAAAGTACATGAGATCACGTCAGAAATTTTCGGTA 2460844 30 100.0 35 .............................. ATATGTTAACGGTAGTAATTACTTATTTTCAGGAA 2460779 30 100.0 37 .............................. TAGAAAAGGCAGGTGGTTAGTTTGGCAAAAGTAATAG 2460712 30 100.0 36 .............................. AAAATGTTGTAATGGCTGTCGAACAACAAATAGGTA 2460646 30 100.0 37 .............................. TTCATCGTTTAATTCTGCTTTCGCTAATGCAATATAT 2460579 30 100.0 37 .............................. TTGAAAAAAAAGAAATTACACCATTTATAATATTTAC 2460512 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 140 30 100.0 36 GATTTAATCTAACCATAGTGGAATTGAAAC # Left flank : TATAAAAAATAATTTGATTGAGAAATACTATGTTTTATATAACACGCTTCCAGATAATTTAAATATAAATATAGATTTTGATGTAAATTATTATATGAAAAATCCTAATGGGAAGAGAATAAAATTCAAAAATGTTTATGTTAAAGGATATATGGTACCTTTTAAGATGTCAGGTAATCCCGATTTAATAAAAGTAGCATACGAATGTGGATTAGGGGAAAAGAACAGTGCTGGATTTGGAATGATACAAAAAATAAAATGAATAATTATAAAAGAGCAATCTTTGTCGACCTTTCTCGATGTAAAAAACATAGGAGGTCGACAAAGAAATTGATAATGTAAAAGATTATTGTTTTTTGTTACTAAAGGGAGAGACGATGAAAATTGAATTTTTATACAATGTCAATAAACGGACTGGAATTTTAAAAAGTATTGAAAAATAACTCATGTTGTGTTAAATTGAATTTAAGCGGGAAAGTATTTTCATGCAATTTTCGTGG # Right flank : CACAAAAAAATTATTATACATAAATTACTCAAACTTCGCACTTATAAAAGTAGCTCTGTACCTTGATAATTCAATATTATTTGGCTATAAAATAGCATGAGACCTCCATTTTTGGTATAATTGAATTATCAAAAAATAAACCAATTGGAGGCTCATGCTATGAATAGTATAACACAAAATTACCAAATTGATAATAAGGTTTCTACTTCGATTAAAAGTTTCTTCAAAAAATATAGAATTTCGGCTGCTTTAAGGTTATCGAATGCTTACAAAAGCAAGGGTATTCCCGTTATTTCTATTTTCGAGTACTTATTCTGTATGATCTTTACCAATAGATCTATGTATATGAATATGCTAATGGGTACAAATCAGGTTGGTTTTAAGAAAGACACGGTTTACAGATTCTTAAACTCTATTCATATTAATTGGATTCGGTTTACCACTTGGCTTAGTGCACAGATTATAAATGAGACAATTACTGGGTTAACAAGTGACAAACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTAATCTAACCATAGTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //