Array 1 66-1248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCT010000029.1 Flavobacterium psychrophilum strain 97713 contig00029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 66 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 142 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 218 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 294 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 370 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 445 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 521 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 597 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 673 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 749 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 825 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 900 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 976 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1051 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1127 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1203 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 16 46 99.9 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CTTTCAAAATTGTATTTTAGCTTATAATTACCAACATTTAATGTAATTGTACCCGAACCAGCTCCG # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1-248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCT010000070.1 Flavobacterium psychrophilum strain 97713 contig00070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 1 41 100.0 28 ......................................... ATCTGCAAAAGCCTCATCTCCAATAGTA 70 41 100.0 28 ......................................... CCTGAGAAAAGCACCATGTTCAATATCA 139 41 97.6 28 ...........................A............. GCCAAAAAAAGCAAAATTTTCAATAGCA 208 41 82.9 0 .................A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 95.1 28 GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : ATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 2-318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCT010000067.1 Flavobacterium psychrophilum strain 97713 contig00067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 2 41 100.0 28 ......................................... CCGGCAAAAGCACCTCGATTAATAGTAA 71 41 100.0 28 ......................................... TTGAAAAAAGCCTCATCTCCAATAGAGG 140 41 95.1 28 ......................A.................G CCTCCAAAAACATAATTTCCAATAGAGG 209 41 87.8 28 .............G..G.....G.........T...G.... TCGGAAAAAGTATAATTTCCAATAGTAG 278 41 78.0 0 .......G.....G..G.....C.........TT.TTG... | ========== ====== ====== ====== ========================================= ============================ ================== 5 41 92.2 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : GT # Right flank : TGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1-316 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCT010000072.1 Flavobacterium psychrophilum strain 97713 contig00072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 1 41 97.6 27 -......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 69 42 100.0 27 .......................................... CTCTGCAAAAGCCTCATCTCCAATAGC 138 42 97.6 27 ............................A............. GCCTGCAAAAATACCCCTTCTAATAAC 207 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 276 41 95.2 0 ............................A............- | ========== ====== ====== ====== ========================================== =========================== ================== 5 42 98.1 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : | # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.13, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1-234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCT010000095.1 Flavobacterium psychrophilum strain 97713 contig00095, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 1 27 100.0 42 ........................... GATATTGAAAATGGTGCTTTTTTCAGTTGTTCTGGTTTAACA 70 27 100.0 42 ........................... ACTATTGGAGATGAGTCTTTTGCACGCTGTTCTGGTTTAACA 139 27 100.0 42 ........................... ACTATTGGAGATGAGGCTTTTGCAGATTGTTCTGGTTTAACA 208 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ========================================== ================== 4 27 100.0 42 TCAGTTACAATTCCTAATTCTGTGACT # Left flank : | # Right flank : | # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGTTACAATTCCTAATTCTGTGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //