Array 1 875600-874224 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCCJ01000001.1 Hydrogenivirga caldilitoris strain DSM 16510 Ga0104484_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 875599 29 100.0 38 ............................. CGCTCGGATTTATAAATTGACCTGCTTGTTCGCCACCG 875532 29 100.0 37 ............................. ACCTTAGCCTTGATAGGGGAAGGTAAACATAAAGAGG 875466 29 100.0 50 ............................. CCTTTCACGGAGTTGGAATTATATAACTTATACAAATCATAAACGTTATA 875387 29 100.0 38 ............................. ATCCTGAGTAATGAGAAATATATCAAGTCCTAAATGTC 875320 29 100.0 38 ............................. TCGGGAGTGGAAGGCTTAGACGACATTCGCTTTAAGAG 875253 29 100.0 40 ............................. TACGGCTCGCAAGCCCGCCCGCCGTTGGCTCTTTTATTTT 875184 29 100.0 38 ............................. CAGGGTTTTGATTTCCTCGCTGCTAGTGATAGACTCTT 875117 29 100.0 36 ............................. TATTAGCGGTTTTAGAAAAAACCGCCATATTATTTG 875052 29 100.0 35 ............................. CGCTTATAGCTTGCGAGAAAACGGGGCGCAAGGCA 874988 29 100.0 37 ............................. TATATGAATAGCCTATGAAATAACAAGCTAACTGTAT 874922 29 100.0 40 ............................. TAATTGCATCGGCTATTTCTTTGGTTTCTAAGGTTATATC 874853 29 100.0 38 ............................. TCGGGAGTGGAAGGCTTAGACGACATTCGCTTTAAGAG 874786 29 100.0 40 ............................. TACGGCTCGCAAGCCCGCCCGCCGTTGGCTCTTTTATTTT 874717 29 100.0 38 ............................. CAGGGTTTTGATTTCCTCGCTGCTAGTGATAGACTCTT 874650 29 100.0 36 ............................. TATTAGCGGTTTTAGAAAAAACCGCCATATTATTTG 874585 29 100.0 35 ............................. CGCTTATAGCTTGCGAGAAAACGGGGCGCAAGGCA 874521 29 100.0 38 ............................. TCTTCCACTTCCCATTCCTCACTCTGAAATGAGTAGCT 874454 29 100.0 38 ............................. ATGCGGCTTCAAGCATTTTGCGAATTCTGTGAAAATCA 874387 29 93.1 37 .........C......A............ TATAGAAATATTTGACATATTGGGATTATTTGCATGA 874321 29 100.0 40 ............................. GACGTTGTAACAGCGTTCACCACATTTCTCAGTTCTGTCT 874252 29 96.6 0 .........C................... | ========== ====== ====== ====== ============================= ================================================== ================== 21 29 99.5 38 GTTCTTAATTATCCGTGTGGAGTTGAAAC # Left flank : GTCGCGCGCTTCTAGGCTGTCTTCCCTTTACCTCCCTTACCGATACCCCGAGGTCGGTACTCAAAAGTTCCTCCAGAAAGCGAAGCTCGTCCGACCTGAAAAACCCCAGAAATTTATGTCCCTCCTTAGTTATAAGTTCTTTGTATAACTCCTCAAACCCCCTCACGGAGATAAATTATACCCCTTGCATAGCAGGATAGAAAGGAATATAATCTTGGAGAGGGCTTTAAGTAGCCCTCCGGCTCCTTGACAAGTGAATAGGGAGTATGAGGCTCTCAAAAGTAAGGGGAGTGCGGTTTTAATTGAATCATCAAAATGCCTAAATGTTTTGATGTTTTGATGATGGGTTTCTAAAGTGATTGTTTTTCAAAGGTTTAAAGGTGGTAAATTTTTGAGCAATTTACTTCACTGAAGATTTCCGGAAATTAACTTCATTTTAGAGCACTCTCCTTTGCGTAAGTTATTGATAATAGTTTAATTTTGTAACACCCCGTTTGAGG # Right flank : AAATAACCCAAACCAAAACATGGAGTTTGGAAGGTTTTGCCGAAAAACTGCCGAAATAGAAAGGTAAAAATGGGTTTCTCAGAGGTTCGGAAAGGCTCCTTCAAAGGAACGCCGAAAACGGCTCTTCTCGTTGAAAGACAAGGAAAACAAGGATTTTCAGGAGGTAGTCCTCTGAAGAGAAATATGGCTTCGGGAGCCAGAGGTCGCAGGTTCAAGTCCTGTCGCCCCGAGGATTTCTGTAAAACACAGCATAAAGTGAGACTGGACACTAAAAAATGCGACTGGCACACCATAAATTGCGACTGAGAGGGAAGGGCAGATGGCTTCTAAGTTAGGTTTCTCAAAGCTTGCAGACTATAAGGGGTACGGTGCAAAAATTCTGTATTTTATGGATTTGCGGGCACCAGAGAGTTACGAGCCTGTTGAAAAAATTACCGCAACTCAGAATATCAGGCAACCTAAAACTCATATTGTCCTCAAAAGATTAAATTGTAAGAGGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAATTATCCGTGTGGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.90,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 888615-887059 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCCJ01000001.1 Hydrogenivirga caldilitoris strain DSM 16510 Ga0104484_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 888614 29 100.0 38 ............................. CAGTTTTAACAGCAGGTTTAGGCTCAGGTTTAGGCTTG 888547 29 100.0 38 ............................. AGAATTGAAGTGTTAAGGTTTCTAAAATTGTTTTCCTG 888480 29 100.0 35 ............................. TGATATTCCTTGAGAAGCGAAGACGGGAGCAGGTG 888416 29 100.0 35 ............................. TTAAATGGGAGGTGAAGCTATGAAAAAGTTTAAGT 888352 29 100.0 37 ............................. CTACCTCAAGGAGCAGGGGTTAATTGAGGATAAGGGG 888286 29 100.0 39 ............................. TTAGCGATTATCCAGTAGTTCATATCAACCGTATAGAGG 888218 29 100.0 41 ............................. AAGGCATTCAGCAGAAACTTAAAGGAAGACTGGAAGGAGTG 888148 29 100.0 36 ............................. TCTTCTTCTATGACCCGAACCGTGTCGTAGTCTTTT 888083 29 100.0 38 ............................. CTATTATAATAGGCTGGGATAGGGGGTGTATTCAGACC 888016 29 100.0 38 ............................. TACCTAACTTAGCAAGTGATACGGGAAAGTAAAGGAGT 887949 29 100.0 37 ............................. CAAGTATTATAGGAATTTTATTGCCTTGACTATCTCT 887883 29 100.0 37 ............................. GTAGAACCTCATCACGCTGTTTAAAGCCTTTGAAATA 887817 29 100.0 39 ............................. TTTCAAAATTTGCTAAGAACATTCCTGAACCCATAAAAG 887749 29 100.0 36 ............................. ATTAATGAGATATTCAAGACTGATGATAGAGAGATA 887684 29 100.0 37 ............................. AGAAGGAACCCGCCACCGCAAACTCGGTTAGTAGAAA 887618 29 100.0 35 ............................. GCACTTATTAAAACCCTGTATTTACGAGGTAATAT 887554 29 100.0 37 ............................. TCGAATTCCTTCAAGGTTCCCTCCTCCTCTTCTTCTA 887488 29 100.0 38 ............................. TTAGAATTACAAAGAGAAGAAGCATATCAAAGGGTTTT 887421 29 100.0 36 ............................. AACCTGAAATGGCTTTGCCGTCTTGCTAAAGTTCGG 887356 29 100.0 37 ............................. ACACGTTGCCGGTCCTTTTATATCTTTCTCTGACCGG 887290 29 96.6 38 ................A............ GCATCAAGAACGGGGACAAAAGCTGGGCGTCTTTTAAT 887223 29 93.1 41 .........C......A............ TTGCTAACACCTCCTTTAAAAGTTTTAGAATACCTCTATTA 887153 29 89.7 37 ....C....C......A............ CCTTGAGGTTGTTGATACCGAGAGACCGTATATGAGC 887087 29 79.3 0 .........C.............A.TGGA | ========== ====== ====== ====== ============================= ========================================= ================== 24 29 98.3 37 GTTCTTAATTATCCGTGTGGAGTTGAAAC # Left flank : CTTGAGCTCCTTGAGTTCCTTTAACTTCCTTGCTATAAGCTCACCCATAGGAAGCTTTTCCTTGATGCTCTCCATCCGGAGCTCCTTCCACACATTCTCCGGCAGGGACACGGTGGTTCTAACAAACTTTTTCTCCTTCTTACCCGCCTTCTTAGCCATATAAAAATTGTACCGTTGCATATGACTTTACAGAGTTGTATAATTATTAAAAAAGCAAGAGAGGGTTTTAGATAGCCCTCCGGCTCCTTGACAAGTGAATAGGGAGTATGAGGCTCTCAAAAGTAAGGGGAGTGCGGTTTTAATTGAATCATCAAAATGCCTAAATGTTTTGATGTTTTGATGAAGGGTTTCGGAAGTGGTTGGCTTTCAAAGGTTTAAAGGTGGTAAAATTTTGACCACTTTCGGACACTGAAGATTTCCGGAAATTAACTTCATTTTAGAGCACTCTCCTTTGCGTAAGTTATTGATAATAGTTTAATTTTGTAACACCCCGTTTGAGG # Right flank : GTTGAAATAAAAAATTGAAATTAATTAACCTCTCGCTTCTGGGCTAAAAGAATACAGGTCTTCAAAACTAATGTTTATGGATATAATCTTTTTATCGTTTTCACTTTGTGTTAGATATTCCACCTGCCTTCCGTCTTTTACTGCAAAGAGTGTTAAGGCAAGCGTAATTGCAGAAGTTCCACCGCTTATGTAAACTGAAATATCCTCGTCATCATAACCGGAACGCTTTATCTCCTTTAGTATCTCCGTAAGAACCCCTACTATCTCCTCGTAATTATTAAAATCTATTCCTTCCGATTCAGGTTTAAAATGAACGATTTCTTTTGCTTCTTCTCCGAGTATTTCTATAAACTTATCTTTTGACTTATAAACCTCTTTACTAATCAAAATATACCATTTCTCAAGTTTCTCTTTGTGAAAAAGATATAACTCAAGGAAAGGAGCCCATGTATGATCCAGTCCTAAAATCCTTTCTTTATCTCCATTAGCAAGAAGTCTTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAATTATCCGTGTGGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.90,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 1237084-1237415 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCCJ01000001.1 Hydrogenivirga caldilitoris strain DSM 16510 Ga0104484_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 1237084 35 94.3 38 ....................GA............. CCGTCCACGTCCTCAATCCACAGCCCCCCTACGATCCT 1237157 35 100.0 36 ................................... CGTATACTGCGCCCTCTTGTCTTAGGGAAATAAAAC 1237228 35 100.0 42 ................................... ATAAGAAAGTCAGCGTTTTAGCTACTGAGATAAAACATTTAG 1237305 35 100.0 41 ................................... CTGAGGTTCATTTTTCTTATTTCATCAATCATATCAGAAGA 1237381 35 82.9 0 .............G......GA.........TCT. | ========== ====== ====== ====== =================================== ========================================== ================== 5 35 95.4 40 CTTGCAATGCCCTAAAGAAATGGAGGGATTGCGAC # Left flank : AGGAACTGGCACGGAAAGGAGTAAAGAACCTATGTGTGATACCGGTGTCCTTCGTATGCGAACACTCAGAGACGCTATATGAGCTTGACGTTCAGTATAGGCAGCTTGCTGAGAGTCTTGGGGTTGATAACTTCGTAAGGATACCCACTCTAAGGACACACCCAACATTCATAAAAGCCCTCAGAGATATAGTGGAGAGCAGCTTGAAACCTGAGCAAAGCAGTTTCTTAACCTCTTGATAATTCTTAAAAATTTTTAAAGCTGACGAAGATCATATTTGCATTTTCAGTACATCTGCTTAAATTGTTGTGTAAGTAAGGGAGGGTTGAGATAGCCCTCATGGCTCCTTGACAACTGAATAGGGGAAAATTAGCTCAAACCCTTGTGGGACAGTCTAAATCAGAAACTCGTTGATAACTCTGCAAAATCGTGACGTTGAGTCTAATTGAGAACAATTCGCACTCTGTCCCCCTTGAAAATCAAGGACTTTTAAAGGACCT # Right flank : CACAGGTTTTCTTTCCTATACATAAATGAATGCCTGTGAAACCTAAGATAGTTGTGAGCGCATGCCTTGCAGGTGAGAACGTCAGATACGACGGCAAGCCTGTTGAAGATGAGTTTTCCCAGAAGCTCATAAGATACACAGAGGTCATAAAGGTATGTCCGGAGGTTGAGCTCGGTCTCGGTGTGCCGAGGGACAGGGTCATAGTTTACCTTCAAGGTACAGAACTGAGGTTGTCTCAGCCCTCAACAGGTCTGGAGCTTACCGAGAAGATGTCCCAATTTTCTAAAGGCTTCCTTGAACAACTGCCGGAGGTTGACGGCTTCCTGCTCAAATCCAAATCACCCTCCTGTGGCGTCTCACGGACAAAGACTTACGGAGACTCTAAAGGTGAACATTACAGAGGTCTGGGAAAGGGTCTCTTCGCCTCAGAGGTTCTTAAGAGGTTTCCCCATCTGCCAGTAGAAGATGAGCTTAGACTGAGGTCCTATAGGGTCAGGCTG # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAATGCCCTAAAGAAATGGAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //