Array 1 65795-67007 **** Predicted by CRISPRDetect 2.4 *** >NC_015512.1 Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 65795 37 94.6 28 ...A..........C...................... CAAATTGATTACAATCACCACTTAAATA 65860 37 100.0 26 ..................................... ATTCTCTTAGCTTCTTCAGCTCATAT 65923 37 91.9 28 .............A....................G.T TGTTTTAATGTGGGTGAATTGTTTATTT 65988 37 100.0 26 ..................................... TGATTTTTTCATCCTTAGCGATGTGT 66051 37 94.6 27 ..............C.....................G TCAATTCATTAAAATGAAAAACCTAAT 66115 37 97.3 27 ..............C...................... CGATTATCTTAAATATGTTATTAATGT 66179 37 97.3 30 .C................................... ATCGTTTTTGTTTTTTCTTTTCCGTTCGAT 66246 37 97.3 28 .............A....................... ATCAACTTACTCTTATAGCGGATTGTAT 66311 37 100.0 32 ..................................... ATTTAATTCATAAACTAATTTATCAACGCCAT 66380 37 100.0 29 ..................................... ATCATTCAAAACTCACAATAATGAATACT 66446 37 100.0 27 ..................................... TGTTTTTTTAATCCCTTTGTGGCTTTT 66510 37 100.0 28 ..................................... ATGAACTAATTTTCATTATAAACCTTTA 66575 37 100.0 28 ..................................... TTGAATCAAAACTTAAAAATATGAAAAA 66640 37 100.0 31 ..................................... TATTTCATCATTCAAACTATACTTCTAATTA 66708 37 100.0 28 ..................................... AGTAAACAAGCATAAAAAAACAACTAAT 66773 37 100.0 29 ..................................... AGTTTAAACAATTATTATTTCACCCATTT 66839 37 100.0 28 ..................................... ACAATCAAACAACTAATCAATATGAAAG 66904 37 100.0 30 ..................................... TTTTTTTTTTAACCAAAATCCACGCAAGAT 66971 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================ ================== 19 37 98.6 28 GTCGCGATTCGAAGAGGAAACAGGCTCTTGGTGCACC # Left flank : ACCCGACTGGGTGAAAAGTTGCGGCACTACGAGCAACAAGCCGAAGCGATTACGGTATTTGTGTGGGCCAATCGCTTCAAGCCATCTGAACAGGCGGCTTTGCAATGCAGTGCGCTGAGCGTGGAGTTGCCCCTGGCCAGCAGTAATACCAATGAGTTGATTCATTGGGCGAGGCTGTTGGTGAGTAGGTTGTACCAGTCGGGGGTGCGCTACAAAAAGGCGGGAATCATGGCTACGGCGCTGCGGCCACAAACGAGTGTACAAATGAACTTGTTTGTGGACGAGGGCGCGTCGTTGCGCTCGGCGCAGTTGATGCAGACGCTGGACGGGATCAACCGGAAAATGGGGCGGAATACCGTGTACTTCGCGGCTTGTGGAAATAAGCCGGAGTGGGGGCCGAAAGCGGAGCGGAGGTCGGGGCGGTTTACGACAAGGTGGGGGGAGTTGATGAGGGTGTGATCGGGGGATCGATGGACGACCACAGAAGGTCGCCCTTACTT # Right flank : CCTATATTTTTTCAACAAGTTGAAAATCAATAGCTAATTGAAAAATAAATTGCAGGACGATTGTTATAGTAATCATTCTACGTCCTCAATTCGATGAAAATCAGAAAATCACCGATAAAATGCTGTCAAAGAACAACGGAGGCTACAGAAACCAGCTAAAAATAGTATAAATGGGTCATTCAACAAAACATTTGGAGAAAATTCTTAGAGGATAAGGTAGCGATCTTTGCCCAATAGAAGCCGGGTATCCATTTCCTGGCCAAGCATGAGCATGTTCAGCAAAGCTTGTTCATGAATTTTCAGGAAATGAATCTTGTCGTGACCAGCAGTTTTGTGTCCCATAAGCGCTTGTAACCTTTTGGCTAGGAGAGACACTCCCGTAGAAGAAATCATGCCAATGAACACCGATTTCTGGATGCGCACAAAGCCACTATTGACCAACTCTTTGGCAATTTTGCTGCGTTTTTTGGTGCTGCTGATGTCGTAACAAACGAGATAAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGATTCGAAGAGGAAACAGGCTCTTGGTGCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 2 70896-70335 **** Predicted by CRISPRDetect 2.4 *** >NC_015512.1 Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================== ================== 70895 37 100.0 31 ..................................... TTGTGTGAACTTTTCTGTCCACGAGTGAATA 70827 37 97.3 27 ........G............................ TAACTGATGGGTATATGGGTTAGTAAT 70763 37 94.6 31 A.......G............................ ATATATGCTAAAAAGGATATAATCAAAGAAT 70695 37 100.0 29 ..................................... TTTGGTTTGAAAAATATGGTTAATAATAG 70629 37 100.0 27 ..................................... TCGAATGTGCCCATAATGAAAAAATTT 70565 37 100.0 27 ..................................... GTGAGAAATTCGGAATGAAAACAATTG 70501 37 97.3 28 ........G............................ CAAAGTGAATTGGATTACGGTAAAAAAA 70436 37 100.0 28 ..................................... AAATAAACAATTCACCCACAGTAAAACA 70371 37 94.6 0 A.................................A.. | ========== ====== ====== ====== ===================================== =============================== ================== 9 37 98.2 29 GGTGCACCAAGAGCCTGTTTCCTTATCGAATCGCGAC # Left flank : TGCGCCGGCCGTGGATGTGCTGCTGGGTACCGACATCATTACCCCGCACCAACATCCTTTGAAAAAACCCACCCCGCTTCCTTTTTTAAAGATGCAGGCGGGCGGGCATTTTCAGTTTTATTTTTACCTGAGTGCTCACGTTACTTCCTTTTTCCCTGCTGACCAGTTACTGGATTGTTTCGCCCAAATGTTGACCCGGTATGGCCTGGGGGCCAAAACCAATTACGATTTTGGTCGAATTGATCAGGCGACCTGGGAAAAATTTTGAACCAGCGCTTTGGGACGAAGTAGGCCTCCCAATGTCTGATTTTATCAATAAAATTTGTAAAAACAAACATTATACGGCGAAAAAATTGCCAATTTGTTCTTTGAAATAGGGGTTTTAACTACTTTTAAGGCTATAAGAGGGGTGAAAGTGATCGTAAGAATCTAGTGATAACAATAGCCCTGGAATTGTTTTGCTTGTTAGTCCTTGATTTTCAATTTATTGAAAAACATAG # Right flank : AGCTTCAGTAAAGCTTCTGGGGTCTTTTCGAACCACTCCGATGAAATCACAATTGTGATGGGGCCAAAAAAAATTGGGCGATGCTCCAGCAAATGAAGTGTCGCCCAATTCAGGGATTATAAGGATTATGTGCAACGCTAGAAATAGAAGTCGTAGTTAGGCGGGCGCATACTTTGAGCCTTGTCAAATTTTCGGTGGTATTTCTGGTACACTGCATCATCTGCACCCTGGATTTGAGACAAAAAAGCCAACTGTCCTTCAATGGACTGAGCCGCGAACCGCACCTTGGACTGCAACCATTTTTTGTCCATTTCCAGTTGTCGGCTCAGCCAGCGGAGTTGACTGTATTCTTTGATGCACTCGTTCAGGTTGTCCAAAAAAGTATCATTTACAGTAATGTCTGTTTCATCCATGATCAGGCCCGTGACAATTTTAGGGCCCTCCGGGCCAAAATGCATCCGCTTGGCTTGGTTGATTGTAAAACCAAAACTTTGAAGGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGCACCAAGAGCCTGTTTCCTTATCGAATCGCGAC # Alternate repeat : GGTGCACCGAGAGCCTGTTTCCTTATCGAATCGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 80405-81484 **** Predicted by CRISPRDetect 2.4 *** >NC_015512.1 Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 80405 37 91.9 28 ......T......A...............A....... TTCATTCTTCCATCATAGCGCCTTGTTT 80470 37 97.3 28 .............A....................... TATAATATTTTCAACCTTAAAAAACAAT 80535 37 97.3 33 .............A....................... TTCTAAACTTGTATCACTATGGATCCATTAGAA 80605 37 100.0 29 ..................................... TCTTCTTTGCACTCTTCAACTGCTTCAAC 80671 37 97.3 27 .............A....................... TCATCTTTCGCTTTATTTTTGTCGATT 80735 37 94.6 26 ............TA....................... AAGTACATATTTAAAAACCTTTAAAA 80798 37 100.0 26 ..................................... TTTTCTTAACCCCGGTTTGCAAGAGT 80861 37 100.0 28 ..................................... ATATATTTCTTCTCTTTGTGTGTGTTTT 80926 37 94.6 26 ............TA....................... ATTCTCTTAGCTTCTTCAGCTTATAT 80989 37 91.9 28 ............TA......................T TGTTTTAATGTGGGTGAATTGTTCATTT 81054 37 100.0 30 ..................................... ACCATGAAAATAACTAAATATACCATGAAA 81121 37 100.0 28 ..................................... TGTTATTTAATTTTTTTACAGTTTTTTT 81186 37 100.0 29 ..................................... GACCTAATCGGCATTTCTTGTTTCAAAAA 81252 37 100.0 29 ..................................... AAGGAGAGAGAACAAGTCCACAGTCAAAA 81318 37 100.0 26 ..................................... AACCTATTTTTATGAAATATTTGTTT 81381 37 100.0 30 ..................................... TGATATTCGTATATTATTTCATAACTTAAT 81448 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 17 37 97.9 28 GTCGCGATTCGAAGAGGAAACAGGCTCTTGGTGCACC # Left flank : GCGGGAATCATTTTCATCGTGGTGGTCAATAATCCGGTAGTCGGTAAGGTCTTTTAGAATTGTATCGTCGTCTATGGTTAGCTCTATAAAAACCAAGCAATGCGTTTTTTTCCTTTCCTTGATTGATGCCTTATAGCTAGAGAGTTTCGCGGTTTTCCAGCTCAATTTATTGCTGATGGTTTCTTCTTTGTGCTCAAGGAGTATTTTCTCAATTTCCTGCATCTCGAGGTCCATTCCTCCCAGGAAAAAACAATAGGGTTTTTCAGTATGGGTCATAGTTGTGATTGATATTACCTTTTATCTATTGAATGGGTAAAATATGTGTTTTGGTGATGTAATGCAAATTTTTATTATAGATTATTATAGGAAATAAAAGTGAAAAATTGGGATGCAGCAAGAAGGATTGGTCTGGAAGGTTGATTTGGGAAAGGATGAGGTTTTTGAGGCGGGTATAGGTGCTTAAGGTGACAGTTGAAGCAACCGCAAGGGTTGCCCCAACT # Right flank : CCTATATTTTTTCAATAAATTGAAAATCAATAGCTAATGGGCGAAATAATTCCAGGATCATTGTTATCACAAGCTCTTTACGAGGCAAAGTCGATGAGCAGAACAAAATGACCGTTGAAAAAATGTCAATGAACGATAGACATGCTAAAAGTAAACAAATTAGCTTGTCCAACAAAGCAATGGGCGTGATTTTTCAAAGAATCAGTTAGCCATCTTTGTCCAAAAGCAGCCGAGTGTCCATTAGAGGAGGGGGTCTGTATTTATTGAGTTTATCACTTGCAAATCGCTAAGTAACAAAGCAGGAGGATAACTTTTCAGGAAAATATACGCCTGGTTGTGGCAGTTTTTTGCTTTTTGGTTGCTGCCACAAAAGCAAGGTTCATTTCGGCTCAACTGTTTTTTTACAAGCGTATTGATCCCTTTGACGATTGTAGCCATATTCTGGGTACGGAATAATTGCTGGTAAAATTCCAATACTCCTTCATCCCCATGTCCATATT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGATTCGAAGAGGAAACAGGCTCTTGGTGCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 611640-617749 **** Predicted by CRISPRDetect 2.4 *** >NC_015510.1 Haliscomenobacter hydrossis DSM 1100, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 611640 30 100.0 36 .............................. TCCTTGGATGTGAGGCGGTGCGGGTGGTCTTCATTC 611706 30 100.0 37 .............................. TATCAGAGGTGATTCCGTCGTAATGCGGGGTTATCAT 611773 30 100.0 36 .............................. ATAGCGAAGAGGCAACAGAGTTGCAGGTATCAATTG 611839 30 100.0 36 .............................. AAGTCGAACACTTAAATGAAGCTCATAGATCGTATA 611905 30 100.0 36 .............................. GGTCTTTTCGTCAAACGGGTCATCCTCTTCATCGGC 611971 30 100.0 36 .............................. AAGCCCAAAACAAAAGGAATGGGAAGCACTGGTTAT 612037 30 100.0 36 .............................. TGCAACGCAAAACTCATGCCCTGGTTGATAAACGCC 612103 30 100.0 37 .............................. GTAGTACCCGCCGCCGTCCTTGTCGAGGTAGGCATAG 612170 30 100.0 36 .............................. TGAATTTTGCGTTTAGACGTGAGCTGATGCCGTATG 612236 30 100.0 36 .............................. TGCAGAGGATGAAGCGAGGAAAGAGCAAGAACGGTT 612302 30 100.0 36 .............................. TATGTCCGCCGTAGTCCTTCCCGATTGCCAGATCGG 612368 30 100.0 38 .............................. CAATAACCATTCCTGTCGTTGACATCGCCCTCAGCAGC 612436 30 100.0 36 .............................. CGGGTTAATGTGTCGTACAATTCCCGGTTGGGTTGA 612502 30 100.0 36 .............................. TTTACACATGCGGCAAACATTTTTCCACACTTGCAA 612568 30 100.0 36 .............................. AGGCGAACAACGCCTTTTTTTGTCCAGAAAATCGAA 612634 30 100.0 36 .............................. TTTTTTTGATACTGGATAATCCACTCGAGCAATCCC 612700 30 100.0 36 .............................. TTCGTTGTCTTGGGTGTCAAAAACAAGGTCCGACAC 612766 30 100.0 36 .............................. CAAGTGGCACCACCGCCACCCAAAACCGACCTGATG 612832 30 100.0 36 .............................. TCAGTGGCGGGACAGGCACAAGTATCAACGTGTCTG 612898 30 100.0 37 .............................. GAATTAGACATCCGGAGCGACCGACACGAAATCGCAG 612965 30 100.0 36 .............................. ATAGGGTTAGCAATGCAAGCAGCAAGCCAGGGAGTA 613031 30 100.0 36 .............................. CACAAGTAATGATCAATACATTAGAACACGGACTAT 613097 30 100.0 36 .............................. CTGTTACCGGGTTCATCAATAGAACTAGAGTACACA 613163 30 100.0 36 .............................. CAGCTAACAGGAACGTACTGTACTCTGCTATCTTTC 613229 30 100.0 36 .............................. AGTACACTAATGGTGATAGCGTCATTAACGCCCAGG 613295 30 100.0 36 .............................. TGCTTCGTGGCGGTAGCTGTCGATCTCCGGGTGAAA 613361 30 100.0 37 .............................. TTACAACGAACATATTAAAACCTGCCCACCAGCGCTC 613428 30 100.0 37 .............................. TCAGCCATGTATCCTAAACCTTCAGTCAATTTGCCCG 613495 30 100.0 36 .............................. CCATATCCCAGATGGTGAACAACAACTGGGCGCAAA 613561 30 100.0 36 .............................. TTGAGTGGAGTGATGACCCTCGGCACTTGTTGCCTG 613627 30 100.0 35 .............................. TGAATTCGCCTTCAGTTAGTCCATCGTGGTGCATG 613692 30 100.0 36 .............................. ATGTTGAAGGTCTCGCGCTGGTCGCTGCCGGATCCG 613758 30 100.0 36 .............................. AATTAAATTTTAAGGTTTTAAAAATCACTTATCAAA 613824 30 100.0 36 .............................. TCACCAAGAACCGCCAACCCCAATATTTTATCCGCG 613890 30 100.0 34 .............................. ATAATACCCCCTTCTTTTTCTGCGCAGGCAGTAG 613954 30 100.0 36 .............................. TCGGTGTTGTCCAGGTAAGCGGACAAGGAAACCGAG 614020 30 100.0 36 .............................. ATTAGCGGCGTCTTCTATCATGAAAAAATAGACTAC 614086 30 100.0 36 .............................. AAGGTTACTATGCTCAGTAAAAAACACAAAATGAAT 614152 30 100.0 37 .............................. TGTTTAGCCCCTTTCCCATCAATTCTGCTCAAGCATC 614219 30 100.0 36 .............................. TTTGGGGCCGCGCTCCTCCACCATTTGCCCGTGTTG 614285 30 100.0 35 .............................. ACGTAAAGCACTACGTTAAAACCCCTAAGCAGTAG 614350 30 100.0 36 .............................. CGTAAAAATAGAAGCGGATAAAAGCCTCTAAGTTTT 614416 30 100.0 36 .............................. GAAGCTGAGCAAGGAAATTCAATTAGTTATTACACA 614482 30 100.0 37 .............................. TTTAATACGGGCTATTCGCAGCCCTGCAATAATCTCC 614549 30 100.0 36 .............................. TAATTAGATAGCCTACGACTATAACGATAAGGAAAA 614615 30 100.0 36 .............................. TCTTGTTCGTCAGCTTGAATGGGTTGGGTAAACCAA 614681 30 100.0 36 .............................. TCGAATTAGCAGCATTGGCTACACTGCTGGCCAAAA 614747 30 100.0 36 .............................. TTTTTTCAAAGCCCGACAGAGCGGTTGTCGGATTTG 614813 30 100.0 36 .............................. TAAATTACACCGATCGAAACGTTACCGTTCGATCCT 614879 30 100.0 36 .............................. AGATAAGGAAGTATTCCCTAAGTCTCTTCTATTAGT 614945 30 100.0 37 .............................. AGTTTAAAGGGGCGTAGCTTAAATATAAGGGGAAACG 615012 30 100.0 36 .............................. TCATGATGGGGGCAGCCTTTTCCAAAGGTCATTTGA 615078 30 100.0 36 .............................. TGAGTAGGTGGTTTCGCCCGATAAAGTCTCGCTCTT 615144 30 100.0 35 .............................. TCAGCAATGACGTGACATTCTCGTGTATTCATACC 615209 30 100.0 36 .............................. TGCAAAAAGACAAAATACTGAGCGACTTCGCCGGGC 615275 30 100.0 36 .............................. AGGCTTCCACCCAGGGCGGTGAGCGCCCCGCCGATG 615341 30 100.0 36 .............................. TCACTCAGAGGAGTTGAATTGTAGTCGGAGATAGTT 615407 30 100.0 36 .............................. ACACGTATAAGCGTCAAGCTGCTCCAGCGAAACCGC 615473 30 100.0 36 .............................. CTAGGAGATGGCTTGGAATTAAGTTGGTCTACCGTT 615539 30 100.0 36 .............................. CCCGCTGAAAAAGCCAGGGTTTCCCCGTTGGTGATG 615605 30 100.0 36 .............................. ACAAGACATCGGGTTTACTGAAACGGGGGATTTTAA 615671 30 100.0 36 .............................. GCAATAGCAACGCCGGCGATACTGTGATTAATGTGG 615737 30 100.0 36 .............................. CCAGACACGGACAGGGTATTGGAGGACAGCGTCAGC 615803 30 100.0 37 .............................. AAGGTTATACCAAGACGGCAGCAACCAAAACACCGCC 615870 30 100.0 36 .............................. GTGGGTGATCTTGTATTCGTCCTCGGGAATTTGATA 615936 30 100.0 36 .............................. TGCACTTTTCAGCAGCGTATTTTAGTTGAAGGTCGT 616002 30 100.0 36 .............................. GTATTCAGGGGAGGCATGATTAAAGATGTGATCTTC 616068 30 100.0 36 .............................. GCGTTCAATCAAATCGGATTCCAAAACGACATTAAC 616134 30 100.0 36 .............................. AATCCAGGAGATGGAGAGGCTAAAAGTGATGATAAT 616200 30 100.0 36 .............................. TTGTAAATGCCAACAGCATCATAAAAATAAGATTGC 616266 30 100.0 36 .............................. CGAAGGAACCCAAACCTACATTTCCGCGTGGATCGA 616332 30 100.0 36 .............................. CATTTCCCCCTGGTCTAATTTGTGTAGCCATAGCGC 616398 30 100.0 37 .............................. AACAAGAAGAACGGCGGAAACGTGCCTCACATGCACG 616465 30 100.0 36 .............................. GCTTTCGGATGGTGCGGGCTGCGTTGAAGAATCCGA 616531 30 100.0 36 .............................. GTGATCATTGCCGTCAAAATATTCTGACTGAATTTC 616597 30 100.0 36 .............................. ACATTTCGGAGAAGCTGGCCACGGTATTGCTGCCCG 616663 30 100.0 37 .............................. GCGCCTACGCAGCCACCGTGGCCGAGCTGTATGCGAA 616730 30 100.0 37 .............................. AAGTCAAAGCTTTTTCGCCTAAAAAGCCTTTCAAAAC 616797 30 100.0 35 .............................. GTGGAAAGAAATTGCACCCAAAAAATGGGTATCCG 616862 30 100.0 36 .............................. TGAGAACAGCGTTTCAAGATAGAGCAATGGTCTGCC 616928 30 100.0 36 .............................. TTGTTGATGATGTAAAAAACAACCGCATTGATAACT 616994 30 100.0 36 .............................. AAATATGTCGCGTTCCTTTACAGTTATTCTCATTTC 617060 30 100.0 36 .............................. CTAGTTCATGGGCGCGAGCTTCGCGTTCTTTCAAGC 617126 30 100.0 36 .............................. GGGGCAATTCCCTTGGTTCCATCCAGCGCTGGTGAA 617192 30 100.0 36 .............................. CAGAATCATGCGCTCCAGTGCGTTGTAGGCCTGGGT 617258 30 100.0 36 .............................. ATGTTGAATATTGTCCGCTTCTTGAATGAATATAGG 617324 30 100.0 36 .............................. AAATACAACCCGTACCGGTGCTACTCGGGCTACCGG 617390 30 100.0 36 .............................. AGGATTAAGCGGAATAGGTATAGCACCGACGGACGA 617456 30 100.0 36 .............................. CTTTCATCAATCCTGCCCTCACTTCTTGCGAGTTCT 617522 30 100.0 36 .............................. ATGCTGCTGTCTCTTGTTCCTGAGACAAGGCTTGTC 617588 30 100.0 36 .............................. ACTCTTCCGGGTTCCTTCACCTACCGAATCACTTTA 617654 30 100.0 36 .............................. GTAATAGCTTCGCTCCTGGATTGAATTAATCTGGCG 617720 30 93.3 0 ............................TG | ========== ====== ====== ====== ============================== ====================================== ================== 93 30 99.9 36 CTCGCAATTGGATTAAGATGGGATTGAAAC # Left flank : CGGTCGCCGAGCGAAGCCGAGGTGCCCGCTCATACTGGCTTACCTTTCCAGCAAAACAAAAAGCCATGTACGTAATTGCCGTTTACGATGTCAACGAAAAAAGGGTGGGCAAAATGCTGAAATTGTGCCGCCGCTACTTAAATTGGATTCAGAATTCGGTCTTCGAAGGTGAGATTACTCCGGTAAAATTGCAAGAGATGGTCGTCGAAGCCAACAAAATCATGCAAAAAGAGGAAGATAGCCTCATCCTTTTTAAGAGCCGCGACGCCCGTTGGCTCGATAAAGAGGTGATTGGACTGGAAAGAATGAGTACGGATAATTTTTTATAATGCTAAAAATCAACAATTTAAACTTTCGCCCTCTGCCCTGAGCTCCAAAAGTCGTCGATCCCCCTGCAAAATCCGCTTATTGAACATCGACGATTTTTATGGGCTAAAAACGCTCTTTGACAAGTTGGTATTTATTTGGTTTTTAAGGAATAATGTATATTTTTGTGACGG # Right flank : GTCATTAGTCACGAAAAGTGTACCACCAATAATCACGAAAAGTGTACCACTATAAATTGTTAAATTCTCTGGGTCAAACCGGAGCAACAATGTATAGAATGGATGTACACACGACAGTCAAAACATTATTAGGCAGGGGTTTAAGTCGGCGCAAGATAGCGGAGCAATTAGGGATTCACCGCAAAGTGATCAAGCGGATAGAATTTGGCTCTGACTCCTCGGGACTAATCAAAGGTTACACCCGATCCAAACAGCTCAAGGCGTATGAAGGTCAGATACAGACCTGGCTGGATCAGGATTTGACCGGAGAGCTGATCTACCAAAAATTGGTTAAAGAGCATGGACTACAGACCTCGTATTCCACAGTAAACCGAACGATCCGGAGCCTTAAAGCCGATCATGAATCGTTTGTGCCCATGCAATGCCTTGCTGGAGAGGAAGCACAAGTAGATTTTGGTTACCTTGGCTTATTTGATCGTGAGGGCGCAAGCCGGGTCAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAATTGGATTAAGATGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 620191-625304 **** Predicted by CRISPRDetect 2.4 *** >NC_015510.1 Haliscomenobacter hydrossis DSM 1100, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 620191 30 100.0 35 .............................. CTAGCTACCCTCGCAGGAACCGGCGGCCTGGGAGG 620256 30 100.0 36 .............................. AGAGCAGCAACAGCAGGAGCGGGAGCAGAAGCGCTA 620322 30 100.0 36 .............................. TCGTACCAACCTGGCCCACCAATATCCGTATTGAAA 620388 30 100.0 36 .............................. TGAATGCAGTTACGCCCTTTTGCTTGACCAAGCAAA 620454 30 100.0 36 .............................. GAGCGAACAACGATTCGCTGTAATGACTCATATGAA 620520 30 100.0 36 .............................. TAGTTAGCCGACCCCGATAGGGGGAACGCCCTCCTG 620586 30 100.0 37 .............................. GTAAAGTCGATTGTGAGTTGTGTGCTTTTTCTAACAA 620653 30 100.0 35 .............................. CTTGTTCTTTTCTATTTGCTCATATCTCCATCTTT 620718 30 100.0 36 .............................. CGCCTTAGTATGCCCATTCCACCTGCAATTAAAAGC 620784 30 100.0 36 .............................. TGGCCTGGAAGCCTCCCTCCCAGCGGAGTACTCTTA 620850 30 100.0 36 .............................. ACATTTCAGAGAAGCTGGCAACGGTATTGCTGCCCG 620916 30 100.0 36 .............................. ACATGTCTTTGTAAGTCACTGCCGGAACCGCTCCCG 620982 30 100.0 37 .............................. TACTTTTTCAAGATGGACATCTCCAATACCACCGACC 621049 30 100.0 36 .............................. GTAGTACTCGCGATCGTAGTACAGTAAGGCACAGTG 621115 30 100.0 36 .............................. TCCAAAACAAGTCTTTTTGCCCCAACCCGGATACTG 621181 30 100.0 36 .............................. GGTGTACCCCTTCCTGCGTGATTACGATCTTGGTTT 621247 30 100.0 36 .............................. CGAGCAATTGAAAGTATTGAAAGGGGAAGTGCGCAC 621313 30 100.0 37 .............................. GTGGCTAGGGTTCCGGATGAACCTACAGAGGGGTTGA 621380 30 100.0 35 .............................. AGATAAATAAAAAGCTGCGGCTTATTATCAATGTT 621445 30 100.0 36 .............................. CTTGTAAACATTCTCGTCAACTTCTTTGAACTCGTC 621511 30 100.0 35 .............................. TCTTGAGAAAAGGCATAGTGTTTTTTAAAGTTTTG 621576 30 100.0 36 .............................. TAGTTACCAACATTCCTTTGGAATTGGCCTAAACTT 621642 30 100.0 35 .............................. TAGTTGCGTGGGTGATCCTGTCAAGTTTGTTCAGT 621707 30 100.0 36 .............................. AGTGTACAACTACCTCGAATGCAACGGCCTGCAAGA 621773 30 100.0 36 .............................. TTTGCTGCTGTGTCTTAGCTAGCTGCTTCCTTACGT 621839 30 100.0 36 .............................. TTGGTAGTGCTTTGTCGTGTAGCCGCCTTTTACCTG 621905 30 100.0 37 .............................. TGATTGTTTGCTAAACATGCGGTTTGCTCTCGACTTC 621972 30 100.0 37 .............................. TCATGCACGAGTTTTTACGTGCGCTGACTTCATCAAA 622039 30 100.0 36 .............................. AAAGGGTGGCATGCAAGCGATCCGGTAGCGGTTCAG 622105 30 100.0 36 .............................. TCATTTCCAGCGCCAGGGCTTTAGCTTCTCCAAAGT 622171 30 100.0 37 .............................. ATCCGGCTTGAGCACCCTTTAGTTCGCGTTCTACCCC 622238 30 100.0 35 .............................. ATGTGTTAAATACACAGGAGGGGCTAGCAGTGAAA 622303 30 100.0 36 .............................. TGCGTCCCCCTTTCTGATCTCTTGCCGTTCTACCGA 622369 30 100.0 36 .............................. AATCATGGTAACAATGAGTTCAGGGGAAACAATATC 622435 30 100.0 37 .............................. CTGTTCGGAAGAATTAAGGGGGAGTACTACTGGTTCA 622502 30 100.0 36 .............................. TTGTATACTTTCTTGTCGCTCACCTGCCGCTGCGGT 622568 30 100.0 36 .............................. GCCCTATTTGTTGATTGAATTCTGTTTGCCTCCTGT 622634 30 100.0 36 .............................. ATGTCTTCCTGTTGGTTTGCATAATAATTCTTGATT 622700 30 100.0 36 .............................. GATAAGCGATAAGACGAAGGAAAATCAGATAGACAT 622766 30 100.0 35 .............................. TCAGAATCGAAGAAGCAAAATTAAAACTCCGACAG 622831 30 100.0 36 .............................. ACATCTACGGCGAAGGGAAAAACACCGAGTACGGCG 622897 30 100.0 35 .............................. AATTCCTCCAGCTTCTTTTGTAGGTTGGCTTTGTT 622962 30 100.0 36 .............................. CACTTCGCTGATGTCCTCGGTTTGGATGTAATACGA 623028 30 100.0 36 .............................. CTTGTTGCAGCGCTACACTGTACGCGCAAATCAGGT 623094 30 100.0 36 .............................. TGCACTACCGCTACTGCCCTACCCTCAAGCGTGCGC 623160 30 100.0 36 .............................. TATCTATATTTCCCTGCGTTCCATCTCTCCTCTATG 623226 30 100.0 36 .............................. ATATATGAGTAGATCTACCGCGTTAAAGGTTCGTGT 623292 30 100.0 36 .............................. TGCAACCCGAGGCCTCAATTGATCTCATGCGCGTGG 623358 30 100.0 36 .............................. TATCTATATTTCCCTGCGTTCCATCTTTCCTCTATG 623424 30 100.0 36 .............................. TTTTTGCTCCTCCATGTACGTGTCGATCTCTTCGCG 623490 30 100.0 37 .............................. TCGTTGAACCAGCGCCGACAACCCCGGCACAATGGCC 623557 30 100.0 36 .............................. TTATTTGGTTATACTTTTACCGCAAATGTAAGCGAA 623623 30 100.0 36 .............................. GCCTATGACGACGGCGCAAAAGTGGGAACAATTTAT 623689 30 100.0 36 .............................. TTTTGTTTGTTCCGCTTTTTTCCTAAAAAAGCGGTA 623755 30 100.0 35 .............................. TTTGTAGATGGCGTTTGTGTGTAATACCTTTTTTG 623820 30 100.0 36 .............................. TTTGTTGCCCTGGGTGTATACTACCCTTGGTGTTAA 623886 30 100.0 36 .............................. CTGGCTCCCCTGGCAATTTCCTTCCCTCCGTACTGG 623952 30 100.0 36 .............................. TTGAAAGGCAACAAGTACCTGAGTGCTGGAGCCAAA 624018 30 100.0 36 .............................. GGCATTGAAGGCGATGCCCGCACGTTTGAGGTGTAC 624084 30 100.0 36 .............................. GGATCAATTGGCTAATTTCTTCCCGCTGCATTGCGA 624150 30 100.0 37 .............................. TTTCAGAGGTTTCGTAAATTGGAGCTATCCACCAAAA 624217 30 100.0 36 .............................. AGGTTGTTTTGGGTTGTTCTGTCAAATATCTGAAAC 624283 30 100.0 37 .............................. AGAATTTCACCGCTAGCGCCTATGAGAGCAGGATTTG 624350 30 100.0 37 .............................. CGTTGATAACGATTAAGAATTTCACGCATAGATAGCA 624417 30 100.0 36 .............................. TGTCTAACATCTACGAAATAACTTGCGCAATCATCG 624483 30 100.0 36 .............................. GACATAGGTTCTGGTGTATCAGGTGCTTTATCGAAA 624549 30 100.0 36 .............................. GGAGCAGGGGGTAACCATCGCCGATGTTGCAAAGGC 624615 30 100.0 36 .............................. CTTGTTTTTAATGTGCATAATTATTCGTTTTTGGAT 624681 30 100.0 36 .............................. CTGGTTATCGGCTACATAATAATTTGCAATACCGGA 624747 30 100.0 36 .............................. TTTTCTTTTCCGTAGAGGAACACAATCAGGGTCAGC 624813 30 100.0 36 .............................. TAGGCACCTACTACGTTTCCGAGGATATTGACAGGG 624879 30 100.0 37 .............................. ACAACAGGGTCACCCCTACCGAGATGTAAAAGCCTTT 624946 30 100.0 36 .............................. ATCCGTGCAGGATGAAAACATCTTTCTAAAGGATCA 625012 30 100.0 35 .............................. GAAGTATGAGGAGTTGGCGATGTATGATCCGAAGA 625077 30 100.0 36 .............................. ATAGCGTCAGTCCCGTTTACATGAAAAATGTAATTT 625143 30 100.0 36 .............................. AGACCAGGGGGGATTCTTCCGCAAGAACCTCCGCTG 625209 30 100.0 36 .............................. TGGAAAGCCGTAGCCGATGTGCTCGACCTGGCCGAC 625275 30 86.7 0 ..........................TGCA | ========== ====== ====== ====== ============================== ===================================== ================== 78 30 99.8 36 CTCGCAATTGGATTAAGATGGGATTGAAAC # Left flank : GCTAGAAGCCGCAGCCAGAGGTTATTCCGTACTCTTTACCCATTTACACACCCTGCTCGAAAAACTCGCTCAGGGCCGAATCGACTCCTCTCATCGTAGAACCCTTCAGCAAATCCTCGCACCTGATCTGCTTATTCTTGATGAAATCGGGTTCCGATCCCTGGCTCCACAAGCTCTCGACGACTTCTTTGAGATTATTCGGCATCGTTATGAGCATAAATCTACCATCTTCACTTCTAACCGCAATTTTGAAGATTGGGGCGCTATTCTTGGCGATAAGGTCATGGCTTCTGCCATCATTGATCGAATCGTTCACCATGCTCACATCCTTAAATTCAATGGTGATAGCTTCCGAATTAAAGATTTTCTAGCCCATTTGGATAACTCTATTTAATTTTGATGCAGTGGTACACTTTTCGTGATTATTGGTGGTACACTTTTCGTGACTAATGACAGATTGAAACTTGTACAAGTGAATGATGGCGGCAAGCCAAGTTTGC # Right flank : ATAATTCCGGTGAAAGTGGACAGTAAAATCCGGAGCAAAGTGAACAGTAAAAACGGAGTGTCTATCCCAGAGCGGGTATTCCAATAAAAGAAGGATTAAGACATTATTCAAATCCATCAAACCCGCGTGCAAAAAAAATTAAAATCCAAGATCAATATTTTTTGTTTTATAAAACAATAAATTGTTTATTTGTATTATAATCACGCTGTATGGCCAATCACTACGACCGTATTTTCAAGGAGAACATTGAATCACTCTTGTTGCCATTGCTGAAAAAAGTTTTGGGGTTAAGTCCACCTAAACTGCTACCCATTGATGCCAAAATGCAAGTTACCCAGGAGGCAGAAATGGACAACATTCGGCGAGTTGTACACGATGATCCGGGGTTGGATTATGGATTACAGATTGAATTTCATGTGACCGATGAAGATTTGCGCAAACGGAATTTATTGCACTATGCCCTTTTTCATCAGATTACGGGCATGTCCCTGCGCCAGGTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAATTGGATTAAGATGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 6217129-6216928 **** Predicted by CRISPRDetect 2.4 *** >NC_015510.1 Haliscomenobacter hydrossis DSM 1100, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 6217128 24 91.7 34 ................GT...... ATAGAAAAATGCCGCGCCCGTGCCGTGCCAAGAT 6217070 24 100.0 34 ........................ ATAAAAATATGCGGTGCCCATCCCGTTCCAAGAA 6217012 24 100.0 37 ........................ ATAGAAATTGGTGAATGCCCAGGTCGTTATCCAAGAG 6216951 24 91.7 0 ................G...T... | ========== ====== ====== ====== ======================== ===================================== ================== 4 24 95.8 35 AAACCCCGAAGGGGTGACATGATT # Left flank : CCCTCTACCTTCGATTCACCAAAACGATAAAAATGGCTGGAACCTATACTCAAATCTACATCCAATATGTTTTTGCGGTAAAAGGTAGGCAAAATTTGCTGCAGAACCCCTGGCGAGAAGAGGTATTCAAATACATGGCGGGCGTCATTAAGAACAAAAACCAGAAGTCGATTATTGTGAATGGTGTGGCGGATCATGTCCATGTTTTTGTTGGTCTCAGGCCATCCATGTCGGTTTCAAATTTGATCCGCGATGTCAAAAACAACAGCAGTGATTTCATCAATGACCGGCAATTCCTCCCCTATGAATTTTCCTGGCAAGACGGCTATGGCGCATTCTCCTACGCCCATTCCCAAATGGATGCGGTGTATAAGTACATTTTGAATCAGGAAAAACACCATCGCAAAAAACATTCAAGGAAGAGTACCTGGAGTTTTTGCAAAAATTCGAAGTCGAATACAACGAAAAGTACCTTTTTGATTGGTTGGAATGACAAAATT # Right flank : CTTTTGCGTGTCGCCTTAAAATAAAATAATACCACCCCTTCGGGGTTTCTCTTGGGAAAAACGCTGCGATTCCCATTTGCTATAATCATGTCACCCCTTCGGGGTTGAAGCTTAGAACTAATCGGCCCTGCGGTCGTCCGGGGATTCCGGTGTTTTGTGGAACCACGGAGACGGTTGAATTCACCTTGGGTTATTTTAAGCCTCACTTTCGCCCTCGTAATATTTTGCTTCTTGCTGTTGTGCAATACTCAACCCTGCATCCACATCCTTCGAATAGGTCACCGTTTGTTGCCAGGTCCAGCCATACACCCTGGTGCCGATCAAATCACCCTCCGTGATTTCCTTCCCACGGTACCCCCATTTTTTCTTATCGCTGGCTTGGACCCACTCAATGTCTTCAAACATACGGGTAATCACCCCATCATGCACCACTACGGTTTTGTTAACCCTTTCCCGCCGCCAGGGAGCTAATTTCCAAAAACCCGTTTGACGGCCCATCA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAACCCCGAAGGGGTGACATGATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 4 7792545-7795299 **** Predicted by CRISPRDetect 2.4 *** >NC_015510.1 Haliscomenobacter hydrossis DSM 1100, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 7792545 36 100.0 32 .................................... AATTATCTGAATTGATCCAAGATGTACGCCTG 7792613 36 100.0 35 .................................... GACAGACTCCCAGGTTCCAGCCCGTCCCCTCCCTT 7792684 36 100.0 33 .................................... AAAACAATGTTATGAGGTATTAATCCCAGTTTC 7792753 36 100.0 34 .................................... AATAGCCAAGAGCGCAGCTGACAATATGGGGTAC 7792823 36 100.0 32 .................................... CATAACAAACATGAGGAGTATCCCGAACGCCC 7792891 36 100.0 33 .................................... AGAAAAGCAAGTAGTAAACTTGTACAACAAAGA 7792960 36 100.0 33 .................................... GAGAAGTAAGGGTCAGACAGTTGCAGTTCTGGC 7793029 36 100.0 35 .................................... TACAAAGTTCTCTGGGATGCTATCCACCTTTTCCA 7793100 36 100.0 34 .................................... AGGATCTTGAAAGAAGGATATAAGCGTTTGAAAT 7793170 36 100.0 33 .................................... GTATTAGTAGGAGGATCGACGTTACTTTGCAGA 7793239 36 100.0 33 .................................... CTCAACGGCTGCGCATACCTTGTGCATGTACCA 7793308 36 100.0 35 .................................... CCGGTCATAACCTGAAGTTGCTTTCAGTACAACTT 7793379 36 100.0 34 .................................... ACCGCTTTATCGTAGCCAACATCACAGAGTCATC 7793449 36 100.0 34 .................................... CATTTCACACCCAGCCTTACGGCAAAGATGCCGT 7793519 36 100.0 34 .................................... AGCGAAAACTTACCAGTGGCGGCACTTTGGCCAT 7793589 36 100.0 35 .................................... GGTACTTTTTGCTCGGTCGTAAACGGCATAGCAAA 7793660 36 100.0 35 .................................... ATTACCAGAGGATTGGTGCTGTTGGTTTTTGCCCA 7793731 36 100.0 33 .................................... GCTGTAATACGGATTCTCACCGAAACGTGGGGT 7793800 36 100.0 35 .................................... AATCACTAGCCTTGGCCGTTACTTCACGTCCTCAG 7793871 36 100.0 35 .................................... AGTAAGGTGCGCTTTGGCTCGGACGTAGATTCAAT 7793942 36 100.0 32 .................................... ATAAATGCTCTCCAAGCCGGGAACCTTTACCT 7794010 36 100.0 33 .................................... GTGAAGTTTGTTAAAGCCATTTTAATTTAGTTT 7794079 36 100.0 33 .................................... ACTTTTTCACCTTGGCCAATGAAATTAACCGTT 7794148 36 100.0 33 .................................... GTTGCGTAAACCTGAATTCAGCCTTGGCGGAGT 7794217 36 100.0 33 .................................... ACATGATACTTTGTTTAGGTGTGAACAATTAAG 7794286 36 100.0 35 .................................... TAAAATTTTCAGAAGGTGGTTAATTCACCACCTTC 7794357 36 100.0 33 .................................... TATACAGAAGGTTTCATCATTTACAGGTGGATG 7794426 36 100.0 35 .................................... AATATTAATGTGGTCAGTAGCTCGGCTAGCAGCTA 7794497 36 100.0 35 .................................... GAGTCATCCCATCACGATCAATTGCAGCGATGGCG 7794568 36 100.0 35 .................................... AATCGACTAATCGTAATAGTGCGCAACGCGCCAAT 7794639 36 100.0 33 .................................... GATAATGTCTGCCCCTTCCGGGGTAACATTGGT 7794708 36 100.0 34 .................................... GATACGCTGAGCGATGAATCCCTTCCATATGCGT 7794778 36 100.0 32 .................................... GAGAATTCGTACTGCCCGAACGCGATTTCGAG 7794846 36 100.0 34 .................................... CATCTCCATCGATTGCAACTTCGCCAAATTAATA 7794916 36 100.0 34 .................................... CATAATTAAGCGCCAGCGGGTTACGGCAAGTAAT 7794986 36 100.0 34 .................................... TGTATCCAGTAGTTCTTCGCGTCTTATCTCTGTA 7795056 36 100.0 32 .................................... AATAACGCCATGGACCCCATATGTCAATGCGG 7795124 36 100.0 34 .................................... GGTAGTATATGCCGTTTGCCACTTGCCCCACTGG 7795194 36 100.0 34 .................................... GTTTCGGTGAATTTGAAGGCGGCAGGTGTCGCAG 7795264 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== =================================== ================== 40 36 99.9 34 GTAGGAGCGTATTCCATTTCAGACGGGGACTGCGAC # Left flank : CCGCACAAGCCAACCATCACCAAGACGAAATCATCGCGGCAAGGCCAACTTTGGCGCAACGATGATGCTACTTGTTCATTAAAATGATAAATTTACATGTTCTTTGACATCGCTGGAGCATTGCGCTTTTTTACCAATATGCAAAAAATGCACTTCCTTTTTTGTTTATATTTAAAATTCGTAACTTGTTAAATTCGTAATGTGTTTGGCTATTTTCCAAATAACCATCGCAATACGCATAACAGTTTCGACCTAAAACAAAAAACCTGGGAAATGCTCTTTTTTGCACCTTTCATTTTTTTACTACTTTGCACAGTTTTTTGATTGTTAACGGTTTATGAAATTTGGCTCCATTTTTTGCACACGATGGGCACTCCAAAAGAGCAAATTTTATCAACCATTTATGCATAACGGAAATGTATGTTACACGAAACGTGACAATTCTAGGGCCTTTTTTTCGTCGCAATGCGCTGTTATTCAGTTGTATAAAAAAGCTAAGG # Right flank : CAAGATCAAAGTGCCGTAGCACATCATGATGTACATGTAGGCCTTATTGAAACCCTTGGATTTCGATACAGCCTTGATTTTTTCTGGTTCCTTTTTGCACCAAGGCAAAAAGGGACTCTTGCTCCCAATCAAAAAAAATCGTAGGTTTATATTTTCATCAATGCAGTCAAATCAAATTTTAAAAATGGTCAACTTAGAAGCCACCAAGGCCAAAATCATCCAAAAATTACAGGAAACCGACGAGGTGTGGATCATTCGTAGCATTCAAAAACTGTTGGACATCGAAGATACCGAAGAAGCCCTTTTCTGGAACGCGGTAGCGTTGGACAATTTGGCTCATGCTTATAGCGATGATGAGCCTGATTATGATGTCCATATGGTGAAAGAACCTAACGTAGATTACAAGGTATGAAGAGTGGAAATATCGTTTTAATTCCATTGCCTCAGTCTGATAGCACGATCAAACGGAGACCTGCATTGCTATTAAAACAAATGCCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAGCGTATTCCATTTCAGACGGGGACTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 7803909-7805706 **** Predicted by CRISPRDetect 2.4 *** >NC_015510.1 Haliscomenobacter hydrossis DSM 1100, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 7803909 36 100.0 34 .................................... AATAATAGCACCAAAGACAGCTGTACCAGCAGTC 7803979 36 100.0 36 .................................... TGCAGTTGTTCTGCCACAAACTGTGGCATTGACGAG 7804051 36 100.0 35 .................................... TCTTTGCTTTTCTGCAGCTGCAGAGCAAACCTACG 7804122 36 100.0 35 .................................... ATTTTGCTCCATTTCAAATAAATCAGGTTCCATTC 7804193 36 100.0 36 .................................... AGTAAGTGCTTACACATTAGATTTGAGTTTTTGATG 7804265 36 100.0 35 .................................... AGTCCTTATCGTGTAGCTCTCTTGAGTACCATACA 7804336 36 100.0 34 .................................... CATAGTTATCTCTTATCCTTGATCTTTGCCCCAA 7804406 36 100.0 34 .................................... AGTTACCAATTTACCTTTCTTAGGTGATTAGTTT 7804476 36 100.0 35 .................................... GCAATAGTGCCATTGATGATATGCTCATATGGGAG 7804547 36 100.0 35 .................................... GGTTGAACGTCCAAAAGAACAGATTGTCCTTTCGG 7804618 36 100.0 32 .................................... AGTCCTCATTCTTGGGAACTGGATTACCCTTA 7804686 36 100.0 35 .................................... ACATAAAACATTGAGAGTCAGCACAATACCAGCTC 7804757 36 100.0 35 .................................... GTAGTCGTGGTGGGCGCGGGGGCGGGTTTTTCAGG 7804828 36 100.0 33 .................................... GGTTTTGTCCACGGTTAACCTGATTTCCTGAGA 7804897 36 100.0 34 .................................... CTGTTTACAATGTTGATTTCTTGTTGGAAATCGA 7804967 36 100.0 35 .................................... GGACTCGCAGTTACCTTTGAATCCAAATGCACATC 7805038 36 100.0 35 .................................... CGTCATCGACGGCAGAGATGTAAACCAGTCCGCTG 7805109 36 100.0 35 .................................... GTTTCATGTAGTGGAGTTACATTTTTTAACAGCGT 7805180 36 100.0 35 .................................... TGTAGGTTTGGTACGCTTAACGCAACAAAAGCAAA 7805251 36 100.0 33 .................................... GCTGCGCGGCTCTGCTGGCGGCGTAACCGGCGG 7805320 36 100.0 34 .................................... CGGTCAGCGGTACGAACAAGTTCTGTTTTAAGCT 7805390 36 100.0 33 .................................... CGTAACGCTCACAGCAATGGATGATCTCATAGC 7805459 36 100.0 35 .................................... TTTTCCCACGCCGCTTGATCGTCAACGTATGGGAG 7805530 36 100.0 34 .................................... TAATGATTTGTTCACCGGTTGCAGAAAAATTTTC 7805600 36 100.0 34 .................................... ATTCAAGTGAGCCAACTCATTACGACGAGGATTG 7805670 36 97.2 0 .................................T.. | T [7805703] ========== ====== ====== ====== ==================================== ==================================== ================== 26 36 99.9 34 GTAGGAGCGTATTCCATTTCAGACGGGGACTGCGAC # Left flank : CGAACTGAGCGGCAGCAAAAGTACCTTGATCGTATAATGCCCGCTGAAAAATATACTATGGATGTAAAAAATGCTTATTTTTATCCGTCACGATCAGCAAGCAGATGTTCTTTGAAAATCAGGGTTTTTTTTGACCAATATGCAAAAAAATGCTGCCAGTTTTTTGTATTAACTTCATTCGTAACTTGTTAAATTCGTAATGTGTTTGGCTATCTCCCAAATAACCATCCCAATACGCATAACAGTTTCGACCTAAAACAAAAAACCTGGGAAATGCCTTTTTTTGCACCTTTCATTTTTTTACTACTTCGCGCAGATTTTTGATTGTTAACGGTTTGTAAAATTTGGCTCCATTTTTTGCACTCGATGGGCACTCCAAAAGAGCAAATTTTATCAACCATTTATGCATAACGGAAATGTATGTTACACGAAACATGACAATTCTCGGGCCTTTTTTTCGTCGCAACGCGCTGTTATTCAATTGTATAAAAAAGCTAAGG # Right flank : CGAAGGGATGGCGGCGACATTCCCTTCAATTTCCAAAAAAAACTTTATCATTGTAGCAGTCTAATACTGCCTACAATTTCTAGTTACCATGACGCGCATCTTTACGCTTTGTATTTTCCTGATCAACACCATTCAATTGCCCGCCCAGCCCCTCACCCGAGCCGAACTTTACAACAAAGTTAAAGGCATGCTCCTTGGCTCTGCCATCGGGGATGCCATGGGCGCACCCACCGAAATGTGGTCGCGGGAAAGCATCAAGATGGAATACGGCTTTGTAGACCACCTCGACTCCATGGTGCGCGAGCCCTCGCCGGAAGGCACCTGGCAATGGAACCTGCCCGCCGGAGGCACCACTGACGATACCCGTTGGAAAAAACTCATGTTCCAGTACATGTTGGGTGTAGGCGACAAACCGGAGTACGATGCCCAGAAATTCGCCAGTCACATCGTCCAGGAGTACGAAAGAGCGGTCAAAGCCCTGAAAAACACCGAAGGTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAGCGTATTCCATTTCAGACGGGGACTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //