Array 1 262869-263198 **** Predicted by CRISPRDetect 2.4 *** >NC_011738.1 Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 262869 36 100.0 42 .................................... GACTCTTTTTGGAGAAAGCGCGATCGGCAAATCTCTCCCGAA 262947 36 100.0 37 .................................... GATCCTCCCCTCGCTTCGGGTTAGCAATACTTGAAGC 263020 36 100.0 36 .................................... GAGTCGAACTTAAAAATCATTCCATCGAGAGTAATC 263092 36 100.0 35 .................................... ATTTTTTTGGTCTTCTTTGTATTTGATGTCCTCAA 263163 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 5 36 100.0 38 CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC # Left flank : ATAGTTTTCTTCAAGATTATAAAAAAGCTAAGAATCCTTTACAACGTATCCAACTCCAAAATACTTTGGCTAAAGTTTGTTGTTTTTTAGAAAAGTCGGGGGGAGATACGGCTATTTTAAGAGGTAATAATGCTGGAGGTATTTTGTATGATAGTTATACGGGTAAATATTCCCAATATGATCATTTTCGTGTCAGTCTAAATTGGCGTGTGAGTTGTGTTGCTAAGGAGGGTGTTTTATATTTGCGACATTTTGGTGAACATGATGATGTGAATAATAATCCCTAAATTGATGGGTTTGGGGATTTTGTATCATCGGTTTGCGACCGATCGGAAAAATCGCTCAAATGCCTATTGTTTCGTTCTATCGGTCGACCTTAAGCCCGGTAAGGGTTTGAGGGTTGTTGCTGGAGGGTTTTTGCTGGTTTTGTGGTACAATTTAAGGTGAGGTTCGCAAACCCCATCTAGAACCTAGATGAAATAAGGGTTCTGTGGGCAGCC # Right flank : CCAGAACCAATTTCTTATCTAGATTTTCAATGGCAGTTTTGCCCTACCTATTGAGTTAAATAAGACTTCTCCCTTGACAGGACAATGCAATCGCATTACCCTTAAAAGAGTAGAGCATAATTAATAGGCTCAAATAGCTATGACTACAAAACAAACTCCATGCTCAGAATCTACTCTTACTAAACGTTATCAGACTACAATTCCTGAGTCTATTCGCAAAGTTCTTGGGTTAAAAAAGCATGATAAAATCTGCTATACCATTCTAGAAGATGGTCAAGTAACTATATCTCGTGCCGCTCAAACGGAGAACGATCCTATACTAGAAAATTTTCTAGTTTTTCTGGCACAAGAACTTAAAAAGAATCCTCAGCACTTACAAGGGATCAGTGCTAATTTAGTGAGTCATCTTAAGTCTCTAGTTGCTGATGTAGATTTGGATCTTGATGCACCCCTCTCTGATGAGGACGAATAAAATTGTCTGAAGATTATCAAATAGTAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 169238-168133 **** Predicted by CRISPRDetect 2.4 *** >NC_011737.1 Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 169237 36 100.0 35 .................................... AATGCTGTGGAGGTGCTTGATGCACTCTCTGAAGA 169166 36 100.0 36 .................................... TTATTGTTGTGGGTCGTTCCCCTGAAATCTTGTGTT 169094 36 100.0 35 .................................... TAATAAAAACGGTACAACACAAACAATATACAATC 169023 36 100.0 36 .................................... AGATACAATCTGGCGAAATTTTACTAGAAGCCCACG 168951 36 100.0 37 .................................... ATACCAATCTTTAAATTATTCTCAAAAATTAACTTAA 168878 36 100.0 34 .................................... ACAATCCTACGATTAACCCCAAGGAAATTGAAAG 168808 36 100.0 35 .................................... ATGACTACTTATATTTCTCTGAAACTTGGATTTCT 168737 36 100.0 34 .................................... GAAATATTCGCAGACAAATGGGGGGAAGCAATAG 168667 36 100.0 37 .................................... AATACTGACAAATACCGTGAAGTTTGGGCACTTGAAA 168594 36 100.0 35 .................................... CTTAATGGAAAAAGTTCCTCTTACTCCAATGCTAT 168523 36 100.0 34 .................................... TAAATAATGACGATGAGATTTACTTGCTGGTAAG 168453 36 100.0 35 .................................... ACCCTTACTTTAGATTTGAATTGCTCGGAGCAATT 168382 36 100.0 34 .................................... ATAATCAGACATGATTTTATGCTGATGCCACCGA 168312 36 100.0 37 .................................... AGGAAACTAAAGCCCTTTATCAGAAGCTTTTTAGCTT 168239 36 100.0 35 .................................... AAATTTCTCTATTTTTTTATTGTCTTTTTTATGGG 168168 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 16 36 100.0 35 CTACTTTAACCTTTGATGCCGAAAGGCGTTGATCAC # Left flank : CCCCGTGAAGAAATCTGTAATCGAGGGATAGAAAAAGTAGCCCTGGGACTCAGGGAGAAGGAAACCGTCTGTCAAACGGGGCTTACAAGCTCTGCCTTTGCACGGCAGAGACAGCCCCTCGTCGAGGTGTCGGGGGTGATGAGCCTAGATAACTGGCGTAGAGGCTTGCCTCTGTGGGCAGAAATATCCCATCGTGAGTTGGGAAGCCCCAACTAAACTGCTTGTCAGTTAGTTGGGGAGGATGTCACAAATGCAAGCACCTCTGAGTGGGAGCCGAAAATGAAGGACTAAAATGGCTAAAAGTATTGCTCTTGTTGGATTGAAGGTTGCTCTAGTCACGGAAAAGGTGCTTGCAAAACCTTACATCTCTTACAGAGTAAAGATTGTAGCCCCCCAAAAAAGGCTTTTTGTAGCCTAAACTGAAAAGTTTTTGACCTTCATCAAAGGTGCTTGTAAAATTGAGTAAGAGCAACCGTCTATTAAAGCTTTTAGCGTTCGCT # Right flank : TAAACGTGAGGATATTTTCTGTAGGTTTGAGCAGAATTACATTTAGGGCATTTCATATTGCTTTACTAGGGGAAAAATTAGTTTTAAGATTAAGCGAGGCGATCACTATAATTGATCGCCTATTTATCAAAAAATAGATAGAACTGTCTTAAATTATTATTCATGGTTCATTTTTAGGGTTAATAATTAACCGAAAATTACTATCACATTTATTGAATTAAATCCCGAAGAATGTAAAAGTGATAATAGAGAATTTTGTGATAAAAAAAATAATCCAGCCTCTAGGAGACTGAATTATATATGTCGTGTTCGGGTGGTATTATTGAGTTAACCTAATTAAATTAACCTCCCAGACTAAATGATGGTTAGCCTTAAACAGTTGAGATTTTAAGGTTTCCATTAGTTGAACAACCTCTCTATTATCACTTTGCTTGTATTGCCAATAATCAGCGAGCAATAACTGTTGTTCTAAAGAATATTTAGTCATCTCTTTAGCTAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTTTAACCTTTGATGCCGAAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 874249-873560 **** Predicted by CRISPRDetect 2.4 *** >NC_011729.1 Gloeothece citriformis PCC 7424, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 874248 36 100.0 36 .................................... TGACATATCCAAACTTTTTCGCTACTCTCTCTAAAT 874176 36 100.0 35 .................................... AAAGGATCTTCAGAATTAAGGGGTTGAGGTTGTGG 874105 36 100.0 36 .................................... CTGAAGTTATTAAAGACTGCTCTGCTTGAGTGTAAT 874033 36 100.0 36 .................................... CTTCAAGCTTGGGAAGATATTTTTTGTTGATCGAGA 873961 36 100.0 39 .................................... AGAATCTGGTTAATTTGCTTGCTAAATAAATTAGCGCTT 873886 36 100.0 39 .................................... GACAGATACTCCGCCCAACCTGCTATACATTTCATAGTG 873811 36 100.0 36 .................................... CTCTAAGCCTCCAGTCATGATTATTCCTATGGTTGC 873739 36 100.0 37 .................................... TCAGGAAATCACCGTCACCGCCACCGCCACCTCCTTC 873666 36 100.0 35 .................................... ATGATTGTCACGGGCTTTTTCTTTTGTTTGTTTGC 873595 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 100.0 37 CCCTACCTATTGGGTAGAATAGGAATTGTTGGAAAC # Left flank : GTTGATTTACTTAAGTACCTAAAGCTACAGATTTTTTTTACATTTGATGGAGGTGATTGAAAGACCTAAGTACCTGGACTTTCATTTATAGCAAACGACAAGACGGGCGCGGACATTTCTCAAACTTCAAACAAACATAGCAGTAAAATTTTAACCTCCTGCCTCCTGCCCTCTGCCTCCTGCTATAAGTTAACTGTGAGATTAGGCAACAGCTACTCCCGCAACAGGCAACAGTAAAGGAATTGTGGTGTTTTACATTTCTTAACACAGAGATATTTATTTATGTCCGCCTAGTTACTTAGCTATTTTGTATCATCGTTTAGCGACTGACTCCAGAAATCGCCGAAATGCCTATTTTTTCGTTTTATCGGTCGACCTTAAGCCCGGTAAAGCTTCTAGGGATTTTGAGTGGCTTTTTTGGCTCAATGTGAGTTATAATTTTGATGTCGGTCGCAAACTCTATCTAGACTCTAGATTACATAAGGGTTCTGTGGCTAGCC # Right flank : GGATTTCCGACGTTTGCCTTATCCCCATCTTTGTGAGGACTCTACCTATTGGGTTGAATAAGAATAACAAATAATCCCGAAGCGCCTGACACCCTGAAGGGTGCAGCTACACGAACAAAGCCTGCCTTCGCAGGCTAATTTATTGTGATTTTAAATTATTTATAAAAAAGGACGGGAGTGCGAAAACTGCCATCTTTCTAAGTGGCAGATGAAGCACGACTCGGCATATGAGCGATGCCGTGAATATTAATATCAAGTGGTATCATGATGGCGTTGTTCTTCTATATATATTCTAATCGTTTCACTAGATACATTACCGGCTGTCGAGACAAAATATGAATGAGTCCACAAAGAGGGTAATTTTAAAAGATGGGGGAATTCTTGTCTTAACAATCTAGAACTTCTCCCCTTGATTGCCTTGGCCACATCATGAGGGGCTATATTTGGAGGAACATTAATAAACAAATGTACATGATCTGGCATGATCTCTAGAGCTATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCTATTGGGTAGAATAGGAATTGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 885275-884072 **** Predicted by CRISPRDetect 2.4 *** >NC_011729.1 Gloeothece citriformis PCC 7424, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 885274 36 100.0 34 .................................... AGGCGGTTTTACACCCTAGGTTTGGCAGGCTCTT 885204 36 100.0 36 .................................... AAGTTACTGGAAGTATTGCTAGACCAATTGGCTTTA 885132 36 100.0 37 .................................... GTTCGACCGAAATGCTCGACCTTTTGCCCGGAAAAGT 885059 36 100.0 36 .................................... GAAATATTCTTTGCGCTTTTGAATTTTTTGCTTCTT 884987 36 100.0 36 .................................... TGAAGACAAACTTAAAGTAAATAAAATACAAACAAG 884915 36 100.0 41 .................................... TTACCCTTAACGGTAGCATCATATGCTTCCGTTCCCATCAT 884838 36 100.0 40 .................................... TCATTACTGCTGGGCTTTTCGGCCTCGAACAGTTTGACAG 884762 36 100.0 35 .................................... CGGAGAAACAATCGCTGTCAACTCCCTGACGGATT 884691 36 100.0 39 .................................... GTAAAGTAGCTATATTTCATAAGGTTTACCTAGTTTGAC 884616 36 100.0 37 .................................... TCTTTGGAGGTAAATGGCCCGATGGCATATGCACCGG 884543 36 100.0 37 .................................... TCAAGAGGAACGCCATCTAATCGGAATACACCAAAGT 884470 36 100.0 35 .................................... TTTTCAGCGAATTGCCCTCTTAAAAATTCTTGAAA 884399 36 100.0 40 .................................... ATCTGATGAAGATCATAAAGTGCGGTAATCCCCTGGATAT 884323 36 100.0 35 .................................... GCGATCGAGATCAGTAAAACCGGATTTTTCAGCCG 884252 36 100.0 37 .................................... GCATTTGCCCAATCTTTTAGTCCTCCTTCAAACCAAC 884179 36 100.0 36 .................................... TAAACTTTTCCGCTCTCTCGAATTGTTTAAGGTAAG 884107 36 83.3 0 ........................A.AAC..A...A | ========== ====== ====== ====== ==================================== ========================================= ================== 17 36 99.0 37 CCCTACCTATTGGGTTGAATAGGACTTGTTGGAAAC # Left flank : AATAACACTAGAAATATGAATGATCCAAGTGGGAATTGATAGAGCGTGCATAGTTTCCTGTTTTGGTTGGCTTTTGTATTATATCAGGAAAGAGGCAGGAGGCAGGAGGCAGAAGGCAGGAGGCAGAAGCAAAAACCCAATATTAAATTTATTTGCTATTTGCGTAGTGGCTTATCATTAATTTAAGAAATAAACCGTCAAACTACTCCCTACCCTCCCCACACTCCCCACACTCCCCCCCCTCTCCCCCCTCTTCCCACACTCCCCCCTCTCCCCCCTCTCCCCACACTCCCCCCTCTCCCCACCCTCCCCACCCTCCCCACCTACCCCGATGATCCCTCTCAAACCCTGATTCTTTCGTCGGATTGCGTGGATGCTTTACACAGAGGGAGTTTGAGGGCACTGCTTTACTTGTTTTTGGGAGATAATGTATAATTATTTTGGGGTTGCGTGGATTTGTCCTCTGAAACCTTTACCGAGTCTGGGCTGCCAGACGAACT # Right flank : CCTAGAAAAATTGCGATCGCGCGTGACTCATCCCTCTACTTATGAAAGTCAATAAAAGTAGGGGGTATTGAGTTGCTAAAGAATTGCTTCTATGTCTTTGGGACATCAAAAAGAATTAGAGTTTGGCAATAATATTCTTTCAAAAGGTTGCTTTCTATAGCGGCGATAAATATTAAAATCATCATCAAGGGTAACAATTGCTGCTATATTTAAACGTTCAGAAATAGCAACTAAAGATAAATCAGCAAAATCGCCGGGTAAATCAGCATACTGTTGATTAAGTTGTTTAATTCTTTCAAAGTCTTGATTAAGTAAAGGAATACACTCATAAAGCTTCTGAGCTAAATCATTTAGAAATTCATTTTGTGTCAAGTAGCTACTACTAAGTAAATACATCACTTCAGTAACGCAGGGAACAGTAGTAATTAATTGGCTAGTACATCTTTCAAAAAAAGTACACACCGGCTGATGATAGTCATCATTGGTACTATAATAAGCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCTATTGGGTTGAATAGGACTTGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 1894683-1904400 **** Predicted by CRISPRDetect 2.4 *** >NC_011729.1 Gloeothece citriformis PCC 7424, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1894683 37 100.0 35 ..................................... GATATTTATGGTGGTCGGCACAGTTTTATGAACAA 1894755 37 100.0 34 ..................................... ATATTTTCAGAAAATCCCGATGAATTTTTCCCTC 1894826 37 100.0 39 ..................................... GTTGAATTAACTTATCCGCAAGCTTGCGGCAAAAATTTT 1894902 37 100.0 37 ..................................... TTAGCGATAGCGGTCAGGTTAGCCCGCCCTACCGATT 1894976 37 100.0 34 ..................................... AAAGTCCATTAAGCCCCCTGGTTGTTGACTTCAT 1895047 37 100.0 38 ..................................... CATCAGATCTTCGTCCAGATCCATGAATCCTCTCGAAT 1895122 37 100.0 35 ..................................... CTAGAATTGGATATTCTCGCCTAGAGGAAACTTTC 1895194 37 100.0 37 ..................................... TTCTCAATTTCATACTGATACTATCAAGAAACAATCT 1895268 37 100.0 35 ..................................... ACTAAGCTAATTTTTTTGTTAGTGCCTGGCTTCTG 1895340 37 100.0 34 ..................................... GTTTCGCACTGTTCGGTCGGTGCGTTTGATCCTT 1895411 37 100.0 34 ..................................... GTTTTATTTTTTCTTGTTGGATTTTTTAATAATT 1895482 37 100.0 33 ..................................... CCTTCGGTTGTCCCTCTCCCGGATATTGCTAAA 1895552 37 100.0 39 ..................................... TCGGACAGTTAGATTCAGCAGAAGGAAGAGGAGCAGCAA 1895628 37 100.0 39 ..................................... TCTACTAAGATGTTCCGTCACGTTGTCTTGGCAAACGTC 1895704 37 100.0 33 ..................................... TTTAGATTATTGATGCGCGGACTGGGAGCAACG 1895774 37 100.0 35 ..................................... CTTTTATCGCGTTCCCTCGGTTGTACCTGTTCCGG 1895846 37 100.0 35 ..................................... CCTGATTTTCTGGTGTGAATGTTCGTGGAACTTGA 1895918 37 100.0 37 ..................................... TACGCTCCTTACGATCCTTCTGGGAGATTTCAGCAAG 1895992 37 100.0 38 ..................................... ACCGAGCGGACTTATGCGATCGTGCCTCGAATCTCTAG 1896067 37 100.0 38 ..................................... TGTCGAGATTTTGCTGTCCGAGATCAGCATCAAAAACA 1896142 37 100.0 36 ..................................... ACCGGATTAAACAGAGACACGATTCTCGACCTCAGA 1896215 37 100.0 37 ..................................... TAGGTATTATGAGAGTGGCAACCTTCGAGGGTCTTGG 1896289 37 100.0 34 ..................................... AACAAAATAACAAAGAATAATAAAAAATATCTAG 1896360 37 100.0 34 ..................................... TTCGATTAGTGGGAGAAACCTCTCAGACTATAAC 1896431 37 100.0 33 ..................................... TTTTTGCCCTTCTACCGTGAAGGTATGCCCTAC 1896501 37 100.0 39 ..................................... CCTACTGGCTTGGTAGCGGCAAAAGGAAAACAGCACAAT 1896577 37 100.0 33 ..................................... GGCAAAGGCAAGCATTCATGGACTACCTCGGCT 1896647 37 100.0 34 ..................................... TAAACAATAGTGTAATTCTAGATATTTATTAAGA 1896718 37 100.0 36 ..................................... ATTTGATTCGGTGGTTTTTTGTGTATCAATAAGGCA 1896791 37 100.0 36 ..................................... AAAGACGTTAAGCCAGCCCGACTCAGAAAAAAAGAA 1896864 37 100.0 36 ..................................... GTTTGAGGGAGCGATCGTGATCGATACGCGCCATTG 1896937 37 100.0 34 ..................................... ACTTCCTGTAGGGAGGGCTTGCCAATGATGGGTT 1897008 37 100.0 36 ..................................... ACTAATATTGATGGGACGGACAGCTTTGATCTTTTT 1897081 37 100.0 39 ..................................... TTTGAATTGTGGCTTAATTTAGCCGTTTTGTCAGGCGCG 1897157 37 100.0 34 ..................................... CGGACGATTTAATCGCATTAAGTACGCATGAAAA 1897228 37 100.0 33 ..................................... CGATTTAATAATTGTTCTTTGTCGATACCGTTG 1897298 37 100.0 36 ..................................... TTGACATGATAATCTAATAAGGATATGATAATAATC 1897371 37 100.0 37 ..................................... ACGAGTTAAAGATACACAAATGAAAGAATTTTTAAGC 1897445 37 100.0 36 ..................................... CCTTCAGGTTATTTAAATGCCTATCTTCGATTAGAA 1897518 37 100.0 34 ..................................... CGATGTAACTTCTCTCCAATTAATAAACTTTAAT 1897589 37 100.0 37 ..................................... CATCTCTTTCCAATAGATTTGCCAAAAAGGAGGATAG 1897663 37 100.0 36 ..................................... TCGTCCCTGTGAAGCCTTGCCCCTTAATTGGGAAGA 1897736 37 100.0 34 ..................................... ATCGGGAGTCGTCAAAGTACATCAGGTTGTATAA 1897807 37 100.0 38 ..................................... AATAATTAGCTCTAATTTAGAGGATAATTCTTGTTGAC 1897882 37 100.0 37 ..................................... TTCCCCCTGGTTATTTCTCATGAGCGTTATTCCTGGA 1897956 37 100.0 36 ..................................... GAATAACAGAGGCTAGAATTCTTTCTGGTATTGGGG 1898029 37 100.0 37 ..................................... ATTGCAACTCAAACAACTATAGATTCTTTAAGCGGGA 1898103 37 100.0 36 ..................................... GAATCGCTGGAGGATTTCCTCCTAAATCTGCTTTGT 1898176 37 100.0 39 ..................................... GTTCAATAGGCCGATCGCTCTCGCTCATATACGATTTAA 1898252 37 100.0 39 ..................................... TGAGTTAAAAGCATATCCTTGAAACTAAATCATTTACCA 1898328 37 100.0 35 ..................................... TTTGTATCGGCGCTTTTGCGGAACCTGCCGACAAT 1898400 37 100.0 33 ..................................... ATCAACCAGCACCGACACCAAGGGAAAACGTTG 1898470 37 100.0 36 ..................................... GCCCAATTCACGCTAGATCGCGCTGTAGATACCATT 1898543 37 100.0 37 ..................................... CTATCGATCGCCAGCGCCCGAAGCACTGACATTAACT 1898617 37 100.0 36 ..................................... GAAAGAATAGATCAGATATATCTATTGTCATTTTGA 1898690 37 100.0 34 ..................................... GAGATTCCAGGGGCTAAATTTTTTAGGGCTTATG 1898761 37 100.0 35 ..................................... ATAGACGGGGTTCGACTCGTTGATAAAACACAATA 1898833 37 100.0 32 ..................................... TCACGTTAAAGCCGTTGGGGAACGCCTTGGGA 1898902 37 100.0 36 ..................................... GAGACTCCTTCCCTTAACCTCTACGACGCGGGAACG 1898975 37 100.0 36 ..................................... GCAAAAGATTCGAGAAGAAATTGCTAAATTAAGAGA 1899048 37 100.0 36 ..................................... GAAATTTCTCATCTGACAGGGTATTCCGCCCTGGCA 1899121 37 100.0 37 ..................................... TTTCTACAGCACAGCTAACAACCAAGAACAATTTATA 1899195 37 100.0 36 ..................................... ATATACTTTCTCGATCCGATTACGCTTGAGACATTC 1899268 37 100.0 37 ..................................... TGATTTAGAAAAAGAATATAAGTCCAACAAGCATTTT 1899342 37 100.0 37 ..................................... GTTTCAAGCGATTAATTAAGCTTTTATCGGAATCATT 1899416 37 100.0 37 ..................................... ATAAGCATTTCCTCCAACAATTCCCCAATCAAGAAGT 1899490 37 100.0 35 ..................................... TTGATTGAGTGCTGTGTATCCATTGCCTCCTTCAA 1899562 37 100.0 35 ..................................... GCTTCGGCAACCGTTGGGCTGTACGCTCGATTCCC 1899634 37 100.0 38 ..................................... TTGGTATCAGACGCACTATTCCGATAAGTTGTCATTAG 1899709 37 100.0 35 ..................................... CGGCAGCAACAATTGACGGGACAGATCTGGACGAT 1899781 37 100.0 37 ..................................... ATTCCTCCTAGAGCGCTTTGCAGGGGAAGGGTTGAGT 1899855 37 100.0 34 ..................................... CCGAGCGCCCCCAACAAAAGGAAGCGAGTCTATC 1899926 37 100.0 35 ..................................... GAGAGCATTTCTCATCTCCAATGACTCGCTTTAGC 1899998 37 100.0 36 ..................................... TTGAGGAATATTGCTGATGGGATGCGGAAATTTTTG 1900071 37 100.0 38 ..................................... TTTCTTCTTCTGTAAATTTTTGGGCAGTCGTCCAGCGT 1900146 37 97.3 35 ....................................T GATCCAGATAAGCTTAAACCTAAATTTTGGGCTTG 1900218 37 100.0 33 ..................................... TTGATAATTTAGACAAAGTTGGGCTATTCTTGA 1900288 37 100.0 35 ..................................... TAGACTGGCCTCAGTTTTTCTCTGATTTGTGGAAC 1900360 37 100.0 34 ..................................... AAATTTATGCGTATAAATCAATTTCATATCAAGT 1900431 37 100.0 38 ..................................... AACAAACTCTAGCCCTTGAACGCATCGCCACCGCAATA 1900506 37 100.0 35 ..................................... TTGGCGGTAAAAGTACAGTAGTATCTGGCGTTCCC 1900578 37 100.0 34 ..................................... GTGAACAGCCTTTCTGGGACGAGGATAATATTAG 1900649 37 100.0 39 ..................................... AGAGCGCTTGGGGAGGGGGCGCCCGCAGATCCGCGCAAG 1900725 37 100.0 34 ..................................... TGATGCCAAATTGGCGACAGCTTATCGTAAATGG 1900796 37 100.0 37 ..................................... TTAATTTCCTTAAAGTCAGCCCAACTTAACCCTACTC 1900870 37 100.0 38 ..................................... ATCTATAGTCTGCTTATTAAACCTTATAAATGAGATAA 1900945 37 100.0 36 ..................................... ATTCTGGATCGGGGTTCGGGTGTAACCCCCCGCTTC 1901018 37 100.0 36 ..................................... TAGACCCACCGTTCTTTGTCTGTTTTTCTCCTGAAG 1901091 37 100.0 36 ..................................... ACGAGAGAATCGATAAACTCTCGCTTTTCTTGAGGA 1901164 37 100.0 36 ..................................... TTCAATTGATCTAACTCAGAAGAGGGGGCGTAATGC 1901237 37 100.0 37 ..................................... ACATTCTTCTTACTGGTTTTCTGGCGGCTACTGTTTT 1901311 37 100.0 37 ..................................... CGGAATTAGCTATTGATGAGGCTAACCGACCCGCTCG 1901385 37 100.0 39 ..................................... CAAATAGGTTTAGCTGTCGTCAGTTATTATTGGGGGAAA 1901461 37 100.0 34 ..................................... GTAAAGGTTCGGATGAGCAGGATTTATTAAGTAT 1901532 37 100.0 34 ..................................... TATTACGTTCCTGAACAGGAATGAGCCAAAAACT 1901603 37 100.0 34 ..................................... ATGGCCATTGAGGCACTATATCTAGGGAATTAAG 1901674 37 100.0 36 ..................................... ACTTCAATTATAGGTATTCCTCCTATTTCTTGCGAT 1901747 37 100.0 37 ..................................... TTAACCGAATAACTTCGGTTACTCCCTCAGACGGATT 1901821 37 100.0 36 ..................................... ATCTTCCAATTCTAATCGATGGTCAAAATGTCAATG 1901894 37 100.0 36 ..................................... ATGGATTCGATACTTATGAACATTGGGAATACTGGG 1901967 37 100.0 36 ..................................... ATCGTTGGGTGAGTTGTTATAGATCGCCCAACGCTT 1902040 37 100.0 35 ..................................... GATCCGCCTGAATGGCAGCATATCAACCGAAATAA 1902112 37 100.0 35 ..................................... TCGAAAGAATCCAACATTTAAAGATATTTGCCAAA 1902184 37 100.0 38 ..................................... CATATCCGCTATTTTTCGGGTGTTTATTCGGAATTTTC 1902259 37 100.0 38 ..................................... GATATGCGCAGGCTTTTTCTAGCTCCTGCCCTGTTATG 1902334 37 100.0 35 ..................................... TTGCCGAGATATGGGCTATTATTGGCTATGTTCAC 1902406 37 100.0 37 ..................................... GTATCGGGCCAGATCCAGTTCTGGGCAAATTTTCCCT 1902480 37 100.0 36 ..................................... AGAAAGGAGATACCGAGATCGTCGGCGAGTTGCCGC 1902553 37 100.0 34 ..................................... TGGAAAAATTGCGATAGTTAAAATAAACCTTCAA 1902624 37 100.0 34 ..................................... TTGCTGCCGTTATCGTTCGCGTAGTTGACGTAAT 1902695 37 100.0 36 ..................................... CTATAATTCCCCCCACCTTGATCCCAGGATCTAAAA 1902768 37 100.0 34 ..................................... TTAATATTGATGTATATGTGTTATTTGCAAAGGT 1902839 37 100.0 36 ..................................... TTTAAATTTGCTAATTCTTCTCCTTGCAGAATAATA 1902912 37 100.0 35 ..................................... CAACTCAAAAGATACCCGATACGTTGTTCAATACA 1902984 37 100.0 37 ..................................... TTATTACTTCCTGTAAATTTAAGATGAATCTTTTTAG 1903058 37 100.0 37 ..................................... ATATCTCATTATAACAATGCCGAGATATCTTGCCTGA 1903132 37 100.0 34 ..................................... TAATGGAGAAAGCGCATGGCTACCATTATTCTAC 1903203 37 100.0 37 ..................................... AATTAATTGAATCCAATCAATCCCTTTTAGATGCCTC 1903277 37 100.0 37 ..................................... AGACATAAAAGAATTGTTTTTAAATCGACTAAAAATT 1903351 37 100.0 37 ..................................... CCATGAACATTCGCACCAGAAAATAAAACACCAAGCT 1903425 37 100.0 37 ..................................... ATCGTAATGGCTGAGGAATTGTTAGAGCAAGGGCAGT 1903499 37 100.0 37 ..................................... CTTTAAATTCCCCTTCGGAGTATCTCGAATAATCAGG 1903573 37 100.0 36 ..................................... AAGGAACGAGCATTAACCCATAATTTTGCTGATATA 1903646 37 100.0 35 ..................................... ATTGGACTTGAATCGAAAAGCGCCGCAAACCCGAC 1903718 37 100.0 36 ..................................... CTTCTAATACCACTTGGTTAAATATGTCTACGGATC 1903791 37 100.0 37 ..................................... TAATAAGCCTAATTCCCATTACGATAGGCTAATTTCT 1903865 37 100.0 35 ..................................... ACGATCGCTTCTGCCCCCTCATCAACTTCCCCTAA 1903937 37 100.0 33 ..................................... CTAAAAGGGAAGCGCAAGACCCTAAAGGGCATT 1904007 37 100.0 37 ..................................... AATCTAAAGTAGGTATTAAATGTTTTGCTATTAATAC 1904081 37 100.0 37 ..................................... AAATTTAACAATTACATTGTAGTATGTAATCCCTATG 1904155 37 100.0 31 ..................................... TTGACATTCACGGTGAGGGGCAATCCTCACT 1904223 37 100.0 35 ..................................... CGTCAATTTGGAACGATTTTATCGATAAGACAAGA 1904295 37 100.0 32 ..................................... CAGGGAAAAGCTTTCTATCTTAGAGACTAAAA 1904364 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 134 37 100.0 36 CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC # Left flank : CCTGATTCTAAAGAGGCTAATAAGCGCCGTAAACGGTTGCACGATTTGCTCTCAGGTTTTGGTAAATGGACACAATATAGTGTTTTTGAGTGTTTTTTAACTAAGGTGCAGTTTGTTAAGCTACAACAGCAAATCGAATCTTTGATTAAACCCGATGAGGATTCTGTCAGGATTTATATTTTGGATGCTTCTGCTGTTCAGAAAACGATTACCTATGGTTCTCACAAGCCTAGACATGAGGAGGTTATTATTTTATGAACTTTGTTTTGTCTTTGATCTAATTAGGGTATTATAAATTTAGTAAGGTTTTTCACGGGAGGGTAGTGGGGGCAAAAACCCCAGCCCCCGGTGAAAAACGCCAGAACCTTGACAAATCAATACTTTTAAGGATTTTTTTTGATTCAACTTTAAGGCAAAAATGCTGTTTGAGGAGTTTCAAAACTGTCCCCCGTGAAAAAGGGTTCTCAAATCCTTTTCTATCAAGGGTTTTGGCTGTCAGC # Right flank : CTAATTTTTGATATATCCCTTAACTCAAAAACAATCACTTTTTAATTAAAAAAATAATTAATTAATCAAAAATTTTATGCTATAATTTAACCTTAAAATCTAAGAAATTAATAAGAAAATTATAACGACGATAAAAACGATAGAGGGCGACTTTTATCAGCCGCAAAGTCCAGAATTCCCCTATCTCGATGCTCATAAACTAAATTTCCTGTCTGATCAAATAAAAAAGTACCTCCTCTTTGGGTTAAATAAGACGAATCAGGTACATAAGTCTTCCAATTAGACAATACTTCTGTCATATTTCTTAATCGTAGAGTGGCTAATTCAAAAGGGCGCTGAAATCCTTTACCACCGGCAAATTGAAAAAATGAACCTTTTAAAGGCGGTAACACTCCTGTGTCGATAACTTCCTCATCATCAATTAATTGAGGAGCTTGACGATCGCCCCGATAACCCCGGAATACCTCCCCTAACGTCCCAGGACTTCCTATTCCAGCACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 4 2393699-2393456 **** Predicted by CRISPRDetect 2.4 *** >NC_011729.1 Gloeothece citriformis PCC 7424, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 2393698 35 100.0 33 ................................... CCTCAAACTTTAAACTTATTTGAGTCCCTTCTA 2393630 35 100.0 36 ................................... CTTGATTGTTGGCTATAGCGCCAAACAAATCAGAGG 2393559 35 100.0 34 ................................... CTTCTTGTAGGCGTTGAGCGCCACTAAAGCGGTG 2393490 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 4 35 100.0 35 CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAA # Left flank : ACACACTACATAAGTTAACTACATATCTTGCTAAGAACCACAGCAAGATTGTAGTTGAAGACTTAAATGTATCAGGAATGTTAGCTAATAGAAAACTAGCTAAAGCTGTTGCTGATATGGGTTTTTATGAATTTCGGAGACAGCTAGAATACAAATGTAAATTATACGGCTCAGAATTAATAATAGCTGACCGTTGGTTTCCCAGTTCTAAACTTTGTTCTAGCTGCGGAGTTGTTAAAGAAACACTATCCTTATCAGACAGAGTTTTTAATTGTGAGTGTGGTGTAAGTTTAGATCGTGACCTTAACGCCTCGATCAACTTAGCGCACTTAGCGGCCAGTTAGGTCGTGTTAGTCTGTGGACTGGGTTCAGGCCGTCCTTCCCAGGTTGAAGCAGAAAATGAACAAAGAAAGTTGTTTATCAATTTTCTACAGTTTCATGTAACGGTGGGTGGATTTGTCCTCTGAAACCTTTACCTAGTCTGGGCTGCCAGACGAACT # Right flank : ATACAATCTTTTTAACCTTGTTATAAAAATATTTACAACAAGGTTTTTTACTTATTACTTATTAGGAAAACTTAGGTTTTGTTTAAGTCCCGTTATCCATGATTAATTATCGATTATCCATTAGTAAAAGTCTTACCCTGCTAGAGGCAAAATTTCATAAAAGGTTTGGCTCTGAGTTAAGACTTTTTCTACATCTTTTAGGATCAATGATTGTGTATATTCAAATAGTGTGGCTATATCCCATAATGTGAGTTGGATCGGTTGTCGTATCAACGGGTTAATCTCACTGGATATCATACGCTCAAACTTAGCGCGATCGATAAAATCCCACAGTTGTGAAGACCTGGATTGATCTAAGCAAAGCTCCCTGATATACAATCTTTTAGACTCTAGCCAACCCCATTTTTCATCTTGACTGGTGATAATAGATTTCCTGGGAATTCCTGTTTTTCTTTGGAGTTTCTGAAATTTGCGAGATAAAAACTTAGACAAATAATTAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 5 2726175-2729811 **** Predicted by CRISPRDetect 2.4 *** >NC_011729.1 Gloeothece citriformis PCC 7424, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2726175 29 100.0 32 ............................. TCAGTTAGAAGGATTTTTCCTTTGTGTACAAG 2726236 29 100.0 32 ............................. ATTTTTTGAATTTTGGATAGGCGTACCGTTAG 2726297 29 100.0 33 ............................. TTCTCTTTGTAATCTGTGTCCAGTCATCCCATA 2726359 29 100.0 32 ............................. ATAAACGAACTACAGGTCGATTCCATATTAAA 2726420 29 100.0 32 ............................. GAAACAAGTACAATGGTACAAAAAGAAACAGA 2726481 29 100.0 33 ............................. GCATCGGCTCTTTTGCAGTCTTCCCAGACCGCC 2726543 29 100.0 32 ............................. AACTGAGTAAAACTTTTTCCTCTAAGCTAACC 2726604 29 100.0 32 ............................. TCGTCCTTTTTTGGAGTCCTTGGGGGCGACTG 2726665 29 100.0 32 ............................. ATCGATTTCATCGCGTCTTATATGGAGGATAG 2726726 29 100.0 32 ............................. GCGGCCTATGGCGGGAAGCTGCGCCTCGAGTC 2726787 29 100.0 32 ............................. ACAAAAAAGGACAAATCACGAAAAGTAAGTCC 2726848 29 100.0 32 ............................. GATTTTCGCCTACTCGTCCCTCTCAAGGCTTC 2726909 29 100.0 32 ............................. GATACCCTCAAGAGTTTTCGCCATCGTCTCTA 2726970 29 100.0 33 ............................. GAGAGTAAGGAGAGTCTGGATCTGGATAAAAAC 2727032 29 100.0 33 ............................. ACTTTTTGCCCAATTTGCTCTCAAAGAATGCGC 2727094 29 100.0 32 ............................. TTACCTAAATCAAACAAATCGATTCGTACTTA 2727155 29 100.0 32 ............................. TTACCCGGTGGGGGAAATTGGTTCTTCATTCC 2727216 29 100.0 32 ............................. AATGACGATTTGCCGATGTCTCAAGCCGAGAA 2727277 29 100.0 32 ............................. TTAACTATTTTTTTGATTTGAGGAGAAAAAAA 2727338 29 100.0 32 ............................. ATTATCGCTCCTGCGTTCAAGGAAAAATTTAA 2727399 29 100.0 33 ............................. AGATCGAAAGCACGATCGCTCAACTGCAACTTC 2727461 29 100.0 32 ............................. TTAAAGCTTGATGATAAGCTTGAGATCCAGTG 2727522 29 100.0 32 ............................. CTAATCTACGGGATAAACGAGATAAGAAAAAC 2727583 29 100.0 32 ............................. CTTGTCCATTAGCCAACTCTTTAAGCCACTTA 2727644 29 100.0 32 ............................. TAAAGAGGATATGAAAAAACGCAACTTAGAAT 2727705 29 100.0 32 ............................. AATGAGGCACTTTATAAGCCAGTGTTGTCATG 2727766 29 100.0 32 ............................. AACAAGAATCGATATTAGAGAATTTACAATAC 2727827 29 100.0 32 ............................. AAGAAACTCTACAGATACAACAAGCCAAAACA 2727888 29 96.6 32 ............................A GATACGACGTTATCTTTATCAATTTCCCATAC 2727949 29 100.0 32 ............................. TTGCCCAAATGCGTTTAAATTAATTCCTCATA 2728010 29 100.0 31 ............................. GTCTAGTTTTTCGTCAATGTAGAGGTTTGTC 2728070 29 100.0 33 ............................. AAAAAATTGAGGTCTTCATAAGGTTAAAAAAAA 2728132 29 100.0 32 ............................. CAATTTAATTTCGCTATCACCTCAATTACAAG 2728193 29 100.0 32 ............................. TTATCAGATACAATCGGATGATGACAGTATAG 2728254 29 100.0 32 ............................. GAGACAATCACCAATGCCCTCGCTAGGATTTT 2728315 29 100.0 32 ............................. AAGGATATAATTTTCAACTCTACACCTATAAC 2728376 29 100.0 32 ............................. ATGACCCCATGCGATCGCCCTTGCCCGATCGC 2728437 29 100.0 32 ............................. ACTTGATGATTTTTGCTCAATACCTGTCTTTA 2728498 29 100.0 32 ............................. AGGAAATGAAACTTGCTGAAGAGCTTTTTAAA 2728559 29 100.0 32 ............................. ATGGGTTTTTAGGATCGTCCCACCCATCCCAA 2728620 29 100.0 32 ............................. TTTGCCCGACTTAAAAATATTGAATAGCCCTC 2728681 29 100.0 32 ............................. GTGGATTTGGTTAGGGAAAATAAAAGGGGTCT 2728742 29 100.0 32 ............................. TTTGGATCAATACGAGTTTAGGGGAAACTTTT 2728803 29 100.0 33 ............................. GACTACACATGGATGCACAAACATTCATTGTTC 2728865 29 100.0 34 ............................. AAGTAAACCTAAAGAGGGCGAGAAAAAACAAGAG 2728928 29 100.0 33 ............................. ATGTTTAGTTCGTGTAAATCAATTGTTTTTCGC 2728990 29 100.0 32 ............................. CAATGGAACGGCAGCGAGTGGGTAGAGGTTGC 2729051 29 100.0 32 ............................. AAACATTCCCAATCCCTAGACTAGAAAATGAA 2729112 29 100.0 32 ............................. AGTTGGGATATACCGACGAGCAAATAGGGGAC 2729173 29 100.0 32 ............................. TTAGTTTTTCCTTTTTCTATGACTGATTGGTG 2729234 29 100.0 32 ............................. GTTGAAGTTGAGGAGTGGTTGAGTCAAGTCCA 2729295 29 96.6 32 ............................T AAGAATGGGACCACTCATTACCATCAGTCAAA 2729356 29 100.0 32 ............................. GAGTGGCATAAAAATTTTTTTGGGTTGTTTCA 2729417 29 100.0 32 ............................. ATCGAAAATGCGATCGCAATCAAGGAAAAATG 2729478 29 100.0 32 ............................. CAATAGATCGGGTTTTCCTATTTTTTTTATCC 2729539 29 100.0 32 ............................. ATCGAGATGCAAAGCTTCCCTCGGCGACGGGC 2729600 29 100.0 32 ............................. ATAAAGACGCGATCGCTCTCATTCAATCTGAA 2729661 29 100.0 32 ............................. ATAGTTGTCGCTTCCTGCTTATACAGCTTCCA 2729722 29 100.0 32 ............................. AATACCTGCTCTTTATCGACGTACCACTTATA 2729783 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 60 29 99.9 32 GTATTCCCCATGCTTGTGGGGGTGAACCG # Left flank : TAGGAGAAGACAAAAAAACAACAGTACGACAGAAGTGTCGAGAAAAATTCAGCAAATTTCGGTTAATGAAGCGAATTATTGATGATATTGACCAAGTTATTGGATACAGTCAAGGAGAAGCCGAAATACCTCAAGTGACTCATCTTTGGGATGATCAAATTGAGTGGGTCGAAGGTGGACAAGATTGGCAGCAGGAGGTGTAACCATTATGGTGGTTTTTGTTGTTGAAAATGTTGCGAATAGTTTGCGAGGAGAACTAAGTCGATGGTTGTTTGAGGTTAAAGCAGGAGTCTTTACTGGGAAGGTATCAGCCCTTGTACGAGACGAATTATGGCAATATATCGCTGATAAAGTGGGAACTGGTTCTGCTTTGATGATTTATTCGACTAATAATGAGCAGGGATTTAGTGCTAAGGTTATCGGCAATCGTACACGCACCTTGGAAGACATAGAAGGTCTTTTGTTGGTCAAAATAACGTCAGATTAGTTATCCTGGAAGT # Right flank : GTAGAGCATTTCTTATGCCTAAAGCTTAAAATAATGTTTTTAAAGTCAAGTATTTACCCGTGTTAGGGTCAATTAATTGTCCTGATAGTCCTAATTTCAAAATTTGATTGGTTAATTTAACATCATTCAAACAATAATCTACAACCATCTGATGTTTTCCTTGTTGCCATAATTGAGGGGCTAAATCCCCAGAACCCGTCTTAGACATTCCATTAGCACGAGCGATCGCTTCTAGGGTATAATTCCAATGTTTAGGTTGATGCTTCCATTGAGGAGAACCATAACCTGCACGGCGAATTTCTTCTAATAAATCATAGTTAGTTTTGATTTTCATCCCATTTGCTCTCATTAATTTATCATCAAATTTTTTTGTATTAAATCCAATGACAAAAAAGGTTGAGTCTAAAAAATCATTAAGTTTCTCAAAAGTATAAGGAATTAAGTTATTCGGATTAGTAAAATAATAAAATCGGTTATTAACATCTTGAAGATCTTCTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGCTTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2844497-2841764 **** Predicted by CRISPRDetect 2.4 *** >NC_011729.1 Gloeothece citriformis PCC 7424, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2844496 37 100.0 37 ..................................... AATTTTTATCCTAAAATCAAAATATCAAGAATCGATC 2844422 37 100.0 37 ..................................... TGCCAATTTTGGGGAGTCGGAACGGAATGCTCTACAA 2844348 37 100.0 38 ..................................... GCCTTAGAACTACATCGAGAAGAAAACCCCACAGATTT 2844273 37 100.0 36 ..................................... TCCTGGAATACATTATGTCCATAATAGCTCTACGAT 2844200 37 100.0 37 ..................................... TCCTGGAATACATTATGTCCATAATAGCTCTACGATC 2844126 37 100.0 39 ..................................... TCTCCTAAATTAGAATAGATCGCCTCGACTTGTGCGGCA 2844050 37 100.0 36 ..................................... AAACCTATTTAACCAATCGGGCGCAAATTATTGCTA 2843977 37 100.0 36 ..................................... TCATCAGTCTTTAGCCAATCTGAAATATCTTTATCG 2843904 37 100.0 36 ..................................... ATCATTTGAATTTTGATAAGGGTCCGATACTTTCTT 2843831 37 100.0 39 ..................................... CGAGGAAAAATGGCAGGACAATATAGAGAAAGACGTTGA 2843755 37 100.0 36 ..................................... TATAAGTCAATAGTTAAATTTGAAATAAAAGATAGG 2843682 37 100.0 37 ..................................... TTTTTTTCTATCGTATTCCTTAGCGGCCTCTGGATTT 2843608 37 100.0 36 ..................................... TATTTATCTATGGTCTGTTTAGGTTAAGCCAAGCTA 2843535 37 100.0 35 ..................................... TCCCATTTTCGTTTACATTTGTGCAATGCCTGAGA 2843463 37 100.0 35 ..................................... GAGCCAGATCTTCTCGGCTCTTGACATAATGGTCT 2843391 37 100.0 34 ..................................... TTTCCAAAACCTTCCACCTGACTTGAATACTTTG 2843320 37 100.0 35 ..................................... GCGAATACAGCCACTCTTTAAGAAAACCGCTTCTG 2843248 37 100.0 38 ..................................... GCCTTGTCCCCACTGTCCATAGCTTCACCCTGGACAAC 2843173 37 100.0 34 ..................................... AATGCACCTAATCCGATAATTACAACAGCCCAAA 2843102 37 100.0 37 ..................................... GGGCCTGGTTGCCCAGGTGGACCCGGCGGACCTTCTG 2843028 37 100.0 35 ..................................... GCAACACACAGTTCCCTCGCAAACTAAAGGGCAAG 2842956 37 97.3 34 ........G............................ AATGGTAATGTACCGTCTGGTTTTCTTAGTTTAT 2842885 37 100.0 35 ..................................... TGTTGTTATTGTTTAAATCTTTATCAAATAAAGTT 2842813 37 100.0 36 ..................................... GCATTTTAACAATAGCTACCTGCCCATATTTTTCAT 2842740 37 100.0 36 ..................................... AAAATGTTTCATTGATCTTAACTAAATTTCCCTACC 2842667 37 100.0 38 ..................................... ACAAATACTGACCCACCGCTCACCCCTACTCAAGGGAT 2842592 37 100.0 36 ..................................... AGCCCGATCAATCTGTTATTCCTCTAAGAGGCATAG 2842519 37 100.0 35 ..................................... ATCAAGGTCAATTCATGATTTATGTTAAGGAAGAT 2842447 37 100.0 38 ..................................... AGATAGATGATGATTTTGTTGTGGCAGAATTAGCCTAT 2842372 37 100.0 34 ..................................... AATATTAATTAATTTAAATTCGGCCCCCCTAAAA 2842301 37 100.0 35 ..................................... TAATTTAGCCAAGAAATTTTAATTAAGGAGGCTAG 2842229 37 100.0 35 ..................................... ACAAGTCATATGTTTTCTCCATCTTCAGGATTAGT 2842157 37 100.0 35 ..................................... ACCTCCTATTACATGGGGTCGATAATGACACTTAG 2842085 37 100.0 35 ..................................... GTTAGAGAGGATTGGGGATCGCCGATCGTTGTCAC 2842013 37 100.0 34 ..................................... AATTCTCATGATGAGACTGTCTAGAAATTTTTTA 2841942 37 100.0 35 ..................................... GAAATTAGCAAGCTCGATCGCGCTGTTTATCGTAT 2841870 37 100.0 33 ..................................... TGGTTTTCTTCAGTTCAGAAAAATATTCTTCTC 2841800 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 38 37 99.9 36 CTTTCTATTTAATGAATCCTGGCAACGGGATTGAAAC # Left flank : ATCGGGTTGATTGCGATTACTTCTAACCCTGAATGGATGCAAGGAATTTATCGACATTGGCACGTGGCAACCTGGGAAAAGGTTTCGGTTTTGATTTTTATTGTCTTATCGGTCATAACTTTAGCAGGGTTTGAGCTTCCCCAAGGTCAACTAGGAACTCTACTCAGTGGTGGCGTGATTCCTATCCTGAATCTTTTAGTGGCTATAAAAGTTGCTTTAGGGTCTTGGGGAGTTATTTTAGCTTTTATTCGTTATCGAGGACTATTTTAACTTTATTCTATTTAGGGTATGATAGTTTTAGAGTAATTTTTGACGGGAGGGTAGTGGGGGCAAAAACTCCACCCCGCCATCAAAAACTCTAGAACCTTGACAAATCAATAGTTTTGAGGATTTTTCCGGAGGCGACTTTTAGTCAAAATTGCCATTTGAGCAGTTGCAAAAACCTCCCCCGTCAAAAAGAGTTCTCAAATCCTTTTCTAGAGAGTGTTTTGGGTGTCAGC # Right flank : AATAATATATCGAGTCTAGCCTCAATTAATTGAATTCAGTAGATAATACAGTTAGTTCCCAAGAAACGATCGTCACTTGGGGGCTGTCAAAAAATTCTTAACAGTTTGAGGATAGCATCATGAGTCAAGTACCTACTGATGTCGGGAAAAATGAATCAGACCTAAAAAAAATGCCGATTTATGAAAGAGACTTTTATCAGTGGACAATAGAACAAGCACAAGCATTACGAGAGCAAAAACTAGAAGCCATAGACTGGATTAATTTAACTGATGAGATAGAATCATTGGGTAATGAGCAACTACACGCTGTTGAAAGTTATTTAAAACAATTAATACCCCATAAGTTTAAGCTCCAATATGTTAATGATCAATATTCTCGTAAGGGTTGGGAAGATGAAATAGACAACTTTTTAGATGAAATTGAAGATCGTTTAACTAATTCCATGAGGCCAAAGATTGACTTAGACAAAATTTATCAACGTGCCAGGCGAAATGTATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTTAATGAATCCTGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 7 3575124-3575742 **** Predicted by CRISPRDetect 2.4 *** >NC_011729.1 Gloeothece citriformis PCC 7424, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 3575124 37 100.0 33 ..................................... AAAACTGGGGACTAGATTTAAATAGAGATGGAG 3575194 37 100.0 45 ..................................... AACGAACTGAGCTTAATTCCTTCTGCTTCGACCGGAGCTAATAGC 3575276 37 100.0 33 ..................................... GTCGTTCCTGGAGGCATAAATAAACCCGGTGGA 3575346 37 100.0 36 ..................................... CAAGTATCTCCCCCTACATCAATAAATTCTAATCTA 3575419 37 100.0 35 ..................................... GGCTACATCCTCAGCAACCGCTACGCCTGCGCCCC 3575491 37 100.0 35 ..................................... TTTTCTCCTAAAATATTGTAAGCAATTTTATAGGC 3575563 37 100.0 34 ..................................... CAGTGTCAAATAACAATGACGCATAATATTTTCC 3575634 37 100.0 35 ..................................... GAGCCTCTTGGCAATTTCAAAAAGCGACTCGACCT 3575706 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 9 37 100.0 36 GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC # Left flank : TTCAAGGTCTCAAGTTTCAACCCAAGAGTCTTTTATTAGCGTCGGTGGCGGAGGATGGCTGGTTAATTTTGTGGCAAAAAGCCAAAAAACCGGTGCAATGGTTAGAGGGGGTATCCGAGGGGTTTTCAGGGTTAGCTTGGCATCCTAACGGCAATTATCTCGCTGCTGCGGGACAAAATGGGGAATTGTTGGTCTGGGTGGCTTCGGAGAGTGGGAAAGGTTTCGGTTAAAATACTATCTATGTCAATAATCCTATAAAAATTAGTATCAAAATGCGCCCCGATATAGGTGTAGAAAAAGGGGTTAAGCAAAAATTTCTTGTATTTCTTATCTGTTATGGGTTTGAGGGGGATTGGGATTAAGAAGTCAGGCCGCTTCATATACAGTAGGCTTTTTGGGCATTTTGTGTTATGGTAGAGGTGTGACCAATCAAGTTTTTGATCCCTAGGCCGCAACTGAACCTCGAAAACTAAACAAGATAACGCTTTCAACAGCCGGCG # Right flank : CGAAAAATATTATATCTCTTGAATAATTGTCCGCAGATGAACGCAGATGAACGCAGATGAGTTCTTATCAATAACATAAGGATACAGATGAAAGGATAGGATATTTAGTTCAATTTGTGCAAGAATTCTATTAGTTAAAGGCGTTAGCTGTTCCTCTGTCTAACAGGATAACAAAATTAGAAAAATCAAATAGAAACCCTATATATTTAACACTTAATTATACTTAACTTACTGATACCAATTCTCTATAACGCTGCATTTAATAGATCCCCCCAACCCCCCTTTTTAAGGGGGGCTTTCAAGGAAAATAAATTGCATTATCAAGGATAATTGGTATGACTTTTTTTGAAAAAATTAACTAAATTTCCATTCAAAAGAAGTTATATCTAGCCTTTCTCAATTTTTAGAGCGTAAAACTATACGTAAAGGTGGCGATCGCTTTTGTGTTTGCTTTTTATCTTTTATATCATTGGGCTAAATGCCTGCTACAAAAAATATCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 8 3797433-3796369 **** Predicted by CRISPRDetect 2.4 *** >NC_011729.1 Gloeothece citriformis PCC 7424, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3797432 36 100.0 40 .................................... TTAATCGGAAAACTAAAACTGAAATCCTTGATATTTACAA 3797356 36 100.0 37 .................................... CTAAAAACCCTCAAAAATAGCAACACAAACAGACCAA 3797283 36 100.0 38 .................................... GATCTTGGTTGATGATTTCACGACCTTCTGGAATCCGA 3797209 36 100.0 36 .................................... CGGAAAACTGAAAGCATATTCTTGTATATTTACAAC 3797137 36 100.0 35 .................................... ATCTACGTTGTATTCCTAGAGCCAAGCCCAGAATT 3797066 36 100.0 36 .................................... TTTTCAGCCAGCCTTTTACCTCTTCTTCAGAGGCAA 3796994 36 100.0 38 .................................... TAAAATAGCTATATTTCATAAGGTAATTTACCTAATTC 3796920 36 100.0 41 .................................... CTTCAAGTATGACGTTTTCCGGTAGAATAACCCCAAAAAAA 3796843 36 100.0 38 .................................... AACCCAAGGGGGTTTTCCATAAACATTTTCAAACGAAA 3796769 36 100.0 35 .................................... AGTTCTTCTTCTTCTTGCTGAGCTCTTGCGAGCTC 3796698 36 100.0 43 .................................... TACTCGTACATGTTATATACATGTACGCGCGCATGCAATGCGC 3796619 36 100.0 36 .................................... AAAAAAGTTTGGGTTTCTGGGGATTTTTCTCCCCAT 3796547 36 100.0 34 .................................... GTGACAAATACAGCATGGCAATTCTTGAAAGCCA 3796477 36 100.0 37 .................................... CAGTTCTTTAATTGATGTTTCTTCCATATCGTCTGAA 3796404 36 94.4 0 ........................A.A......... | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 99.6 38 CCCTACCTATTGGGTTGAATAGGACTTGTTGGAAAC # Left flank : AAAAATTAAATGTCACAGAACCTTGAATTAAATTGAGGGTGAGTTGCGCCATCAGTAATCTTGTTCTTACTAACTAAGATCATTATTATCCCTCAAATTTTCTCTTATTGAGGAAAAATAGAAACACCTCTTTTTTTCAAAAGTCACTCATTCAAAAGTTTTATATCCTCAGTATTAAGCTAAGACGCATTTAATTTTTATATCCTAATCGAGGAGAAATAAACCCTCTTCACATACGCCCCCTTGCCATGCGCCCCCTTTCCCACACCCTACTACAAAGAATAATTTACCCATCGTAACAGCTTACTTCCCACCCTCTCCACCTACCCCGATGATCCCTCTCAAACCCTGATTCTTTCGTCGGATTGCGTGGATGCTTTACACACAGAGAGTTTGAGGGCAATGCTTTACTTGTTTTTGGGAGATAATGTATAATTATTCTGGGGTTGCGTGGATTTGTCCTCTGAAACCTTTACCGGGTCTGGGCTGCCAGACGAACT # Right flank : GGCTTTATGGTTTCAATATCAAATTGGTATGACTAGATGTCACCTCGGACAAGTGTTTTGAGGTGATTCTTACTATTGATAAGTAGGTGGTCATAATTAAGCATAAAATAGATTTTGTTCGTAGTAGGGCTTCAGCCCTCCCCTGCCAAGGGTTAGCACAACTTTTAATTATTTTTCTATTGTTCGTTTATTTATGCCCACCTACTTAGTTATTTTTCAAATTAACTCTATTGCGGTGCGTTACGCCTTGCGCTTCACACTCTATTCTAAAAATGTCCCACTGTTAACTGTTAACTAAAAAAGGTGCGTTACGCTGCGCTAACACACCCTACTGGACTGACACAGCTAAAATAGGGTAATAAATTTTTCTCCCCTCTCCAAAAAAAAGATCTTCTTCTTTCCCCCTCCTGTAGGAGGGGGTTGGGGGAGGTGGAGAGGTCAAACCTAAGTTAATGCACCAAATTAGTTGTGTCAATCCACTACCCAATTGTCTAACTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCTATTGGGTTGAATAGGACTTGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 9 4019765-4021254 **** Predicted by CRISPRDetect 2.4 *** >NC_011729.1 Gloeothece citriformis PCC 7424, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 4019765 36 100.0 35 .................................... GTGGCGGGGGCCCAGGATAACGTTCCCCCCTTATA 4019836 36 100.0 39 .................................... TTGCTGCAATCCCAAAGGAAAACCAAAGGGGGTTTTCCT 4019911 36 100.0 36 .................................... CAAAATTTTGGGCGAAACCTTGGACGCTTTTAATTG 4019983 36 100.0 38 .................................... AATCTTGACCAAGAGAGCGGAAAGCCCAATTCCAAACC 4020057 36 100.0 38 .................................... GAGGCTGCCGATCCGGTTTTGCAATAAACTGAGTTCGC 4020131 36 100.0 34 .................................... GTGATTCCCAAGGCTGTCCAGATCCCTGGACCTA 4020201 36 100.0 35 .................................... AAAAACATCTCCGTCTTTAAATACGGATGTTTTTT 4020272 36 100.0 41 .................................... TCCCCTCCTAAGTGGGATAAAATTAAGCATGAAGCATGGTC 4020349 36 100.0 40 .................................... CCCCTCTTTGATTCTGCAATGCAGAGAGGATAACGTTCAA 4020425 36 100.0 37 .................................... GAGGAAGGCCCCACCCATCAAAATTAATCATCTACGC 4020498 36 100.0 36 .................................... TACTTAATGCACCTATTGAATCTAGCTGTTCAGCAA 4020570 36 100.0 34 .................................... CTGAAGCGTACAAGAAAGTTTTGCCTTTCAATTC 4020640 36 100.0 36 .................................... CCCGGATCGGGAGTTTGTAGCTCTCCGATAAACCAA 4020712 36 100.0 35 .................................... TGGGCTAAGATTTTAGACCGCAGACGGTCAAAAAA 4020783 36 100.0 34 .................................... GCTTGTTCAACGTTTTCTTGCGCCCCTTTTAGGG 4020853 36 100.0 33 .................................... ATAACGTCAGCCTCTTGAGCGCCATTTCGCAAA 4020922 36 100.0 41 .................................... AAACCCTGCACATATCAGCCAGCACGTCAGACCCCGGTGTC 4020999 36 100.0 37 .................................... CTTATCTCTATGGCTATTGCTATCAATTCTTCGTAGA 4021072 36 100.0 38 .................................... TCCTTTTGGGAGAAACTTTGAGTAATCCACATGCAATA 4021146 36 100.0 37 .................................... GAAATTTAATTGTCTTTTGAGGAGACTTACTTTGGTT 4021219 36 83.3 0 T.........................AAC..A...A | ========== ====== ====== ====== ==================================== ========================================= ================== 21 36 99.2 37 CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC # Left flank : CTCCCCACACTCCCCACACTCCCCACACTCCCCCCACTCCCCACACTCCCCACACTCCCCACACTCCCCCCACTCCCCCCACTCCCCACACTCCCCCCACTCCCCACACTCCCCCCACTCCCCCCACTCCCCCCACTCCCCACACTCCCCCCACTCCCCACACTCCCCCCACTCCCCCCACTCCCCCCACTCCCCACACTCCCCCCACTCCCCACACTCCCCCCACTCCCCACACTCCCCCCACTCCCCACACTCCCCCCACTCCCCCCACTCCCCACCCTCCCCACACTCCCCCCTCTCCCCACCCTCTCCCCCCTCTCCACCTACCCCGATGATCCCTCTCAAACCCTGATTCTTTCGTCGGATTGCGTGGATGCTTTACAGGGAGGGAGTTTGAGGGCAATGCTTTACTTGTTTTTGGGAGATAATGTATAATTATTTTGGGGTTGCGTGGATTTGTCCTCTGAAACCTTTACCCGGTCTGGGCTGCCAGACGAACT # Right flank : ACCTAGAAAAATTGCGATCGCGCGTGACTCATCCCTCTACTTATGAAATTCAATAAAAGTAGGGGGTATTGAGTGTATGACTAAAACTGATTTATTGTAAGAATAAACAGACAAAGTAGGTTGGGTTGAGGGAGGAAATCCAACCCTCAAATTAGTTCAGTTTGATATAGCGTTTCTCAATTAGATGAGGGACACTTTAAACTTTATTTCCTGTTGCCTGTTGCAATAGTGCCTGTTGCCTAAAACCCAAGACTCTGTACCTCACCAATATGAGAACTGCTATAGAGAATTTTTCGGGTCGTTTACTCTTGTTTTTTCCCGATAAATTCTAAATAAGAATTGCTCAATTCCTTGACCGCTAAATCATAAAATTGTTGTCCATGTTCCGGAGTGGCTAAAGCTGGATTAGATCCCATTCTTCCATCAGGATAATGACGACGAAAATTGACTGCTCCATAAATGGGAAATCCGGAAGCCACCTCTGGATTTAAAGCAGCCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 10 5096252-5095710 **** Predicted by CRISPRDetect 2.4 *** >NC_011729.1 Gloeothece citriformis PCC 7424, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5096251 37 100.0 35 ..................................... CTTAATTTCTTTTAAATATTCCTCTGCTTGTTTTT 5096179 37 100.0 37 ..................................... TTGCAAACCCCAAAGGTTGATCGGGTGGCGATCGTCC 5096105 37 100.0 35 ..................................... ATGGGTTACTGTTACCAAGGACAGGTCTATTTTAG 5096033 37 100.0 34 ..................................... AGGCTTTCCTGAAATGGCCGGATGGTCATCGGGA 5095962 37 100.0 36 ..................................... TTGGGGATAAAAACCAGCCATTTGTCATAAGGATTT 5095889 37 100.0 36 ..................................... AGCAGAAATGAAAAAGAAACCAAATAAAAATACTTG 5095816 37 100.0 33 ..................................... GTCAGTAGTCCTTTTTATTTTTATAAAGGGTCA 5095746 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.7 35 CTTTTTAATTAATGAATCCTGGCAACGGGATTGAAAC # Left flank : CTCATTTAAGTGATCACTATCGCCTAATATTTTGCCCCCATGTAGTTGACATAATTATATTGTAGGGTGGGCATCGCCCACCATTGGGAGGAAACATCAAACAGATAGAGCATTGTTTATTAAATACCATTTCTGAAAAATCAAACCACAGTCTTTGATGCGTCGGGGACGCATCCTACAATTTGAGCGAGAAGGTAATTATGCTTAATGAGTCCGACAACCGGTATAAGACCTGAAAGAGGCATCATACAATTTGAGCGAGAAGGTAATTATGAGTGCCAGACAAGAGGGAAAAATGAGATAAGATACACCCGTTTTTTGTTTTTTGTTTCAATTATTAAACTTGGTTAGCATATCCACTTATTTTATAGCTCTTCTCATATTAGTGAGGTACAAAGTTCTAGGTTTTAGGCAACAGGCAACAGGAAATCAAGTTGAAAGTGTACCTCACCTAATTGAGAAACACAAGTCATATGTTTTTGTTTTCTGTTTTTTCTTCA # Right flank : AACTGAGCATTTTTTCAAAAACTGGGTTTAAAAGATCACCCTGAACTTATAAGGACAATATCTAAACTTATCTGAATTGACAAATTTGTAGTTTTTGCCAGAATCTTTACAAGAATAAAAAATTTTTTTGGATTAATTACTCATTTAATCAGCCATCTCAATGAGAATCCCAATTATTGTTAGATCATTGGTTCAATCGAGAAGATATAAAAACTTCTGTGTATCTTCTGGAATTTTATTAACTCTCTATTCCTCCTTCGTTCCTGTGGTGGCTCAAGAAACCATTGCACCACTACCCCCCCTAGAATCTGGTTCTGTATTAACAGACGCTAATTATACTGTTGGGCCTGGCGATCGCATATTAATTAGTCTCTTTCAAGAAGAAAATTACACTGGAGAACATATTATTGCAGTCGACGGGACAGTAAGTCTACCTTTAGTCGGTAATCTGAAAGTTAGCGGACTGTCTTTAGCAAAAATAACTGAATTAGTCACTCAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTAATTAATGAATCCTGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //