Array 1 11659-12168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBQN010000028.1 Enterobacter cloacae complex sp. P13B 1702004319_S58_R1_(paired)_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11659 28 100.0 32 ............................ GACGACGCCCCGCTGCCGGAGTGGCTGCCGGT 11719 28 100.0 32 ............................ GACATTCTTCGCGCTAAAGAGCCAGTTTAACG 11779 28 100.0 32 ............................ TGTTATATAGTTGATTTCCGTTCTAAGAAATC 11839 28 96.4 32 ....................T....... TTCTGGCGCACCAAAACTGGGAGGCTGACCAG 11899 28 100.0 32 ............................ AGTCTCTCCCAAACGATCGCATTGCTCGACGG 11959 28 100.0 33 ............................ CACGTACCAGATTACTGGCTCTGTGGAGCAAGA 12020 28 100.0 32 ............................ GGAGAAATGCAGCGCTCCAGTAACACAATCTG 12080 28 96.4 32 ...........................T TTCCGACAGCCGTGAAAATGCACGGTCAATCT 12140 28 78.6 0 ......C....A...T.....A.GC... | C [12166] ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTCACGGTTTGCATAAGCTGTTTGGTGGCGTGGGCTTTATCAGCGGCATGCTGGTAGAGAAAGGGCTGCCGGGATTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCACCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGAGTGGGTGAAACGTTCGCGCTCGATAAGGTTGGGGCATGGGCGATTGAAAGTCTGGTGTACTTCTTTGTTGGCTCGCTGGCGGTGGCGTGTTTAGGGGCAGGGCGGTTTGCGTTAGGGAAAGCGCCTGCGTGGCAATAAAGCTGGGTACTGAAAATATAAGGGTCTCTGGACTTTTTTTATTGGTGGTTTTTAAGTCTTTGATTTTATTAAGCGGAATTATTTGTGATGAAAAAAGGGTTTAAGGGGTATTTTTTAGGGGAATTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCA # Right flank : ACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTAGCGCTTACCAGGCCTACGATCGAACGTTTATTGCTTATGCGAGGACCAGATCCCCCTGCGGGTGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATATTCCCCGGAAACCACTTTCGTTTTACAGCAGCCGCACACGCCCGCACGGCAGGCCGCGACTACCGGCACCTTGTTGCTTTCCAGCGCTTCCAGGAGCGTGGTGCCCACGCGACCAAAGAAGGTCTGTGCGGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAGCGGGTCACGCCAAGCGCTCTAACTTCTTTCTCCACGATATCCATGTACGGCGCCGGGCCGCAGGTCATCACGGTACGGTTCGCAATGTCCGGCACGCTTTGCAGCAG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9907-9516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBQN010000046.1 Enterobacter cloacae complex sp. P13B 1702004319_S58_R1_(paired)_contig_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9906 28 100.0 32 ............................ GGGTCATGCTCGGTTGCGCTCAATATCGACTA 9846 28 100.0 32 ............................ GGTTTAAGCCCTATTTGCCCCGTACAATCATT 9786 28 96.4 33 ...............C............ AGCAAGCGTAGGTGTGCTGGGACTGATAAGGGT 9725 28 100.0 33 ............................ ATCAACTTATCGCTTCCAGCGCGCGGCGCGTGT 9664 28 100.0 32 ............................ ATTACTGACCGTATAATCAAGGTTGTCTAGGT 9604 28 100.0 33 ............................ AGGTTGTGTACAGGGGGCAGCAGCTTGAGTGAT 9543 28 78.6 0 .........T...........AC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAATAAATGAGCGGAATTCGTCACCTGCGAACCGGGTTCACTGCCGTACAGGCAGCTTAGAAATTACGCTAATTTCTTATACACGCGAGGCTCATGTTCACTGCCGTACAGGCAGCTTAGAAAAGCCGGTGGCGAACTTCCCACGGCTTTTCGCTGGTTCACTGCCGTACAGGCAGCTTAGAAACGATTCAGATGACCAGACGATAATCGACACGGGTTCACTGCCGTACAGGCAGCTTAGAAAAAGTATACCGGACATGCACCGGCTGTTACTGATGTTCACTGCCGTACAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAGGCAGCTTAGAAAAAAACGGCGCAATAAAATACTGTTTTTATATA # Right flank : AAACTACCCCTCTAAAACATTTACCTTGCCTATTCAAAACTCAATACTATCAAACCCACGCTCTCTATTTTTCACAATAAATAAAAAACTCATTCACGCGCCAATTATATTCCAAAAAATATATTATTCATAAAAATAATACATTGAATGGGAAAGTGATTTTTCGCTTTATTATCACGATAATTACTCTTCATTTGATACTCGTCACATTTGTTTTCATCTTATTTTCGATAACATACCGTTCATTCAACACCTTGAAATAAAAGCTCTTGCCATGTCCGTAAACAGCATCACCTCTACAGATTTAAAAACCATCCTGCATTCAAAGCGCGCCAACATTTATTACCTGGAGAAATGCCGCATCCAGGTGAATGGCGGACGTGTTGAATATGTCACCCAGGAAGGAAAAGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACGCAAATGGCGATGCGCGAGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10275-10066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBQN010000046.1 Enterobacter cloacae complex sp. P13B 1702004319_S58_R1_(paired)_contig_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10274 28 100.0 32 ............................ TTACGCTAATTTCTTATACACGCGAGGCTCAT 10214 28 100.0 33 ............................ AGCCGGTGGCGAACTTCCCACGGCTTTTCGCTG 10153 28 100.0 32 ............................ CGATTCAGATGACCAGACGATAATCGACACGG 10093 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTTCCTGAGTGTAGTTTGTGGCGTCTGGGGTAGGCCCCTGACTTGACCCTTTTTCTTTGATGTCAATGTAAAGTATTGATTTATGTGATGCGAATTTACGTACCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTAGTTTCCTTTCAGTTCACTGCCGTACAGGCAGCTTAGAAATTGAGGGGCTTTCCGCTAGCCGATTCACCAGCGTTCACTGCCGTACAGGCAGCTTAGAAACCCGCTTTCACTTGCCCGGTAACGCCTGTTTTCGTTCACTGCCGTACAGGCAGCTTAGAAATGTTAATGGCGAAGAAGATTCCAAACGCGGAAGTTCACTGCCGTACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAATAAATGAGCGGAATTCGTCACCTGCGAACCGG # Right flank : AAGTATACCGGACATGCACCGGCTGTTACTGATGTTCACTGCCGTACAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAGGCAGCTTAGAAAAAAACGGCGCAATAAAATACTGTTTTTATATAGTTCACTGCCGTACAGGCAGCTTAGAAAGGGTCATGCTCGGTTGCGCTCAATATCGACTAGTTCACTGCCGTACAGGCAGCTTAGAAAGGTTTAAGCCCTATTTGCCCCGTACAATCATTGTTCACTGCCGTACACGCAGCTTAGAAAAGCAAGCGTAGGTGTGCTGGGACTGATAAGGGTGTTCACTGCCGTACAGGCAGCTTAGAAAATCAACTTATCGCTTCCAGCGCGCGGCGCGTGTGTTCACTGCCGTACAGGCAGCTTAGAAAATTACTGACCGTATAATCAAGGTTGTCTAGGTGTTCACTGCCGTACAGGCAGCTTAGAAAAGGTTGTGTAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 10598-10449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBQN010000046.1 Enterobacter cloacae complex sp. P13B 1702004319_S58_R1_(paired)_contig_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10597 28 100.0 32 ............................ TTGAGGGGCTTTCCGCTAGCCGATTCACCAGC 10537 28 100.0 33 ............................ CCCGCTTTCACTTGCCCGGTAACGCCTGTTTTC 10476 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAAATCACTCCCGCAAACGCAGCCCGTATGCCGTTGCCTCGGGGCATATCTGGAAGAGGTTAAAACCGGCCTCACGGAATCCATGCGTGATTTTCAGATAGTGGAATTTGAAGACGAAGCGGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGATACCGAAACGAAATGTGACTACTGCCGGGCGCTGAATCATGTGCTGCTGGTGTCGCATTTTGACCGCGACATGCTGCCGCATCTGACGGGGCTACTCCATGACATTACGCATTCTATGGCCACAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAATTCACATTATTTCCTGAGTGTAGTTTGTGGCGTCTGGGGTAGGCCCCTGACTTGACCCTTTTTCTTTGATGTCAATGTAAAGTATTGATTTATGTGATGCGAATTTACGTACCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTAGTTTCCTTTCA # Right flank : TGTTAATGGCGAAGAAGATTCCAAACGCGGAAGTTCACTGCCGTACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAATAAATGAGCGGAATTCGTCACCTGCGAACCGGGTTCACTGCCGTACAGGCAGCTTAGAAATTACGCTAATTTCTTATACACGCGAGGCTCATGTTCACTGCCGTACAGGCAGCTTAGAAAAGCCGGTGGCGAACTTCCCACGGCTTTTCGCTGGTTCACTGCCGTACAGGCAGCTTAGAAACGATTCAGATGACCAGACGATAATCGACACGGGTTCACTGCCGTACAGGCAGCTTAGAAAAAGTATACCGGACATGCACCGGCTGTTACTGATGTTCACTGCCGTACAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAGGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //