Array 1 299-1114 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNPI01000284.1 Xanthomonas oryzae pv. oryzae strain YN04-5 scaffold283, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 299 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 365 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 429 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 496 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 561 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 626 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 692 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 757 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 822 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 887 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 953 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 1019 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 1084 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 13 31 99.8 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CAATTGGGCGAACATCCGGTCCAGCACACCGGACTTGGCCCAACGGTTAATGCGCGTGTACACCGTATGCCAGTTGCCAAAGCGCTCGGGCAGACCGCGCCATTTGCAGCCATGCTCTGCGACGTAAAGAAGGGCGTTGACTACCTGCAGGTTGGTCATGCTGACATTGCCGCGTTGCAAAGGTAGGCAATGCTCGATGAGTGCAAATTGTGCTGGCGTGATCTCCATGCCCAATAGTTTAATCGCTCGAGACATTAATGTTAACAGGCCCTAGCTCGAAGAGCCAAGCGGCGATGACG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1497-219 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNPI01000088.1 Xanthomonas oryzae pv. oryzae strain YN04-5 scaffold87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1496 31 100.0 34 ............................... ATACGCCACTGAATTAGGCATCAGGTCTAACCGG 1431 31 100.0 34 ............................... TCTCGCTGCGCCCCTTTGCCGGGCGACTCCAGCA 1366 31 100.0 34 ............................... ACGTTAACTACCGCACGCAGGTAGCCGACACCCC 1301 31 100.0 35 ............................... ATAGCCGTAGTATGGGTTCACTTCGGCCACGGATA 1235 31 100.0 34 ............................... TGGCGAGACTGCCACCAACTCGCGACGGTATTGT 1170 31 100.0 34 ............................... ATGATCGTAGGTCCTATGTGGGTAGGTCGTGTAG 1105 31 100.0 36 ............................... CTCTAGCGTCTGTGAAGGATCGGGAACGCAAGGCCA 1038 31 100.0 37 ............................... GTGCCATTTTTCCGCGGCGTGATCACCTGGTCGGCAA 970 31 100.0 35 ............................... CCGATCTGCGCGGTAGGAGCGCGCCGGTCTGGACC 904 31 100.0 35 ............................... TCGTGCTCCGTCTCAACCAGATAAACCGCATAGTC 838 31 100.0 33 ............................... ACTGCGCGAGTAAAGCGTTATCCGTAGGGGCGC 774 31 100.0 35 ............................... AGCAGGATGTGCCGCCAGGCTGCCGGTGACATCTG 708 31 100.0 34 ............................... CCGCAAGCGCTCACCGCTGCGCTACACGCGACAC 643 31 100.0 35 ............................... TGGGTGATGCGCGTGACCTTGTCGGCCGCGAGATC 577 31 100.0 34 ............................... GATGTAGATGCGCGTGCACTGCGGGTAAGCGGCC 512 31 100.0 34 ............................... CAGGTCAAAGCATCAAAGGCGGCGTTGTGCGCGA 447 31 100.0 35 ............................... TTCTTCCTTGCGCGAGTACGGCTTACGAAATACGT 381 31 100.0 36 ............................... ATGACCTTAAGCTCCGTACTCGCGGTCCGCAGGATT 314 31 100.0 34 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTA 249 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 20 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GCGCCACTGCATCGGCGATGGCGCGCATCGACATCCCGGTTTCATATAACGCATGTAGGCGGTATCGTTCTGACAGGTCCAGCCGGCTGGATGACATGGGCAACTCCATTTGGTAGTGAAGTCGCTCAGGTCAGGTCGCCTGGATCACTTCACAACCGTTGGTGTTGCGATCCAGAGTTGAAGCCGCCGGATTCCAAGGAATCTTGAGTTAGGCT # Right flank : CGCAGCTAGCCGCTTGGCGTTTTTTTCGTCCGGCGGCTTCAACTCTGGATCGCAACACCAACGGTTGTGAAGTGATCCAGGCGACCTGACCTGAGCGACTTCACTACCAAATGGAGTTGCCCATGTCATCCAGCCGGCTGGACCTGTCAGAACGATACCGCCTACATGCGTTATATGAAACCGGGATGTCGATGCGCGCCATCGCCGATGCAGTGGCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8244-10496 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNPI01000163.1 Xanthomonas oryzae pv. oryzae strain YN04-5 scaffold162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 8244 31 100.0 34 ............................... TCTACCAGCCCTAATACAGAATTGCAACCCCTGT 8309 31 100.0 35 ............................... TCTATATGGATGCAGCAGATTCTGGGCACTTGAAG 8375 31 100.0 33 ............................... TTCGCATCGGGGACATCACCAGGGACATAGACA 8439 31 100.0 34 ............................... ATCCACTCCCCGCCAGTTCCCTGGACTGGATAGT 8504 31 100.0 35 ............................... GGCTTATCCTTTGTGCTGCCCCACATCACAATCGC 8570 31 100.0 34 ............................... ATAAAACCCTCTCCCAGGCATACCCATCATCATC 8635 31 100.0 35 ............................... TCGCGAGTAGGCGCGGTCCAGGGCCACGCAGTGGC 8701 31 100.0 35 ............................... AACTGGGACAGCCCTAAGCAGAGGTCGGCATTGCT 8767 31 100.0 35 ............................... ATCAAGCGCAATGGCGGTGTCAAAGATCTGACCCG 8833 31 100.0 35 ............................... TTTTGGTTGCAGATGATCATGGGCGATCAGGCTGA 8899 31 100.0 35 ............................... GTTAACCGTCGCAAGTCCTAGCGAGGTATGTGTCG 8965 31 100.0 34 ............................... ACGATGTCAGATATTATAGGTCGCAGTCGCATAG 9030 31 100.0 35 ............................... ATCCCAACCATCATTAGTGCGTATGTCCTGGATGG 9096 31 100.0 34 ............................... ATGTAGCTGGCAAGCTGCGGAGCATCCGACAAGA 9161 31 100.0 35 ............................... CGTGTCTCCATGCTCGGGGTGCCCAAGCACCCCAG 9227 31 100.0 33 ............................... CCTCCGAATGCCTGGTGCAGGGCCGATTCTAAC 9291 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 9356 31 100.0 35 ............................... GTCCACTACTTCACCAAAGATCGCGTCGACCCCAA 9422 31 100.0 34 ............................... ACCGCATTGGCCTCAAGTACCTGAGATCGTGGAT 9487 31 100.0 34 ............................... CAGCGCAATATGGTGACGGTCTTGGCGGAAGAGC 9552 31 100.0 34 ............................... TTCGCCGGCTTGGGCCTGGAACTTGACGAAAAGG 9617 31 100.0 34 ............................... ACGGCGATATGCAGGTGCGCGTTGTCGGTGTCGC 9682 31 100.0 34 ............................... CGTTTAGTTGTCGAATTGGCGTGGCGGCTCATCA 9747 31 100.0 34 ............................... AGGTCCTCTTCGAACGCCGAAAATGCCGACCGTT 9812 31 100.0 35 ............................... TCGCGCATCGAGTTCACGAAGATCAACTGATCGAG 9878 31 100.0 34 ............................... GGGCCTGGCCGCGGACACCGCGGCGTCGGCAATG 9943 31 100.0 34 ............................... TGTCCCTTCGGCCGCGGCAGGGCCGGACGGCGTG 10008 31 100.0 34 ............................... AACGCGAGCATCCCATTGATCGTAGATTTGCGCC 10073 31 100.0 34 ............................... TTGTGGGCCGACACGGCACTCGGCTGGATCGCGT 10138 31 100.0 34 ............................... GAGTGGATAGGCTTTCATTGCGTGCGCTCCCAAG 10203 31 100.0 34 ............................... TAAACAACTCAGGATCAACGTTGTCGTATGCAGT 10268 31 100.0 35 ............................... GGGGTCGTCAGAGCACCAGCAGAGCCAGCAGCATC 10334 31 100.0 35 ............................... GGGGTCGTCAGAGCACCAGCAGAGCCAGCAGCATC 10400 31 100.0 35 ............................... TCACCAGTGGCCAGCACAGGATCAATAGCCTGCAA 10466 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 35 31 100.0 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : GAGCTATACAACACCTCGAAGACACGCAAAGGAACCTCTGAACAACGCACCACAAATGCGAGACACTATTTGTTCGGAATGAGGAGGCATCCATGCAACTGACGTTCGGTGACGCCGAGGGCCTGGGCAAGCGCAAGCAGACCCGGCGCGAGATCTTCCTTGCGGAGATGGAGCGCATCGTGCCGTGGAAGCGACTGCTTGCCCTGATCGAGCCGCACTATCCGGTGTCAGGACGACCGGGTCGGCAGCCGTACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1007-320 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNPI01000165.1 Xanthomonas oryzae pv. oryzae strain YN04-5 scaffold164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1006 31 100.0 35 ............................... CTGGGTCTGATGCTTACGATGCACGCGCGCCAGGA 940 31 100.0 35 ............................... GTGAATTCGGCGTCGTACCAGGCCTCGAGGGCATC 874 31 100.0 35 ............................... GCGCACTTGTTCGATGTACTGCGCGCGGGATTCTT 808 31 100.0 34 ............................... GGCCGCCGAGATATCAACCCCGATGCCGCGCATG 743 31 100.0 35 ............................... GCCGACACGAAAGCTCTGAAACGTTGCATTGCTAA 677 31 100.0 35 ............................... ACCTACGACGGCTCGTCGACCTACGACGGCTTGCA 611 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 546 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 480 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 415 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 350 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 11 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TACTGCCCATGGCAGCGCGGCAGCAACGAGAATGCCAACGGATTGACACGCCAATACTTGCCACGACAGACCGATTTCAGCACCATCACCGATGCGCACCTGCGATGGATCGAGCAGCGGCTCTACAATCGTCCGCGCAAGATACTTGGATTCAAAACGCCCCTCGAAGTCTTCTCCGAGGAGGTCCTCAAAAGCGTTGCGAATCAGAGTTGAATTTGCCGTCCCGAAT # Right flank : CAAGCTGACTAGGGCCTGTTAACACATTCGAAGCCCATCAACGACCAGAACGAAGCTGAGGAATCCAAGGAACATGACATCGAGCTTCTCGAAGCGCGTGAAAATCCGTCGGTAGCCCTTCAAGCGACGGAACAGCCTCTCCACTTCGTTGCGCCGCTTGTACATTTCCTTGTCGTACTCCCAAGGATCGACCCGATTGGACTTGGGTGGAACCACCGGCACGAAGCCAAGATCGAGCGCCAACTGGCGGGTTTCATTGCCTTCGTAAGCGCGATCCATCAGCAGATGAACCGGCCGCTCCACTGGCCCCAGGTGTTCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 288-3342 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNPI01000181.1 Xanthomonas oryzae pv. oryzae strain YN04-5 scaffold180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 288 31 100.0 35 ............................... AAGCAGAGGGTGAAATGAAGACCTACCTCACTCGC 354 31 100.0 35 ............................... CATCATAGCAGCAACGGACATCAGCTCCTTAGCAT 420 31 100.0 34 ............................... TGGCATACCACTCACCAAGAGTAAGCAAGATGGC 485 31 100.0 36 ............................... CTTTTGGTTAGATAGAGTTAATTTTCAGTTGGATAG 552 31 100.0 34 ............................... GCCGGCAGTATAACCATCTAGCTGTGCCTCTAGT 617 31 100.0 35 ............................... AGCACGTGTGGCTAAGATCGCCAAGGAGGAGGCAG 683 31 100.0 36 ............................... AACTGGGCATCACCCAAGCAACGCTCAGCGCTACTT 750 31 100.0 34 ............................... ATCATTGCAGCAACGGACATCAGCTCCTTAGCAT 815 31 100.0 35 ............................... AACGGGTCATGGCCGCTGCGAATGAGTTTCCGCCC 881 31 100.0 34 ............................... GCACGCAACACATCGCCGACATCCTCGCCCTACT 946 31 100.0 34 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGC 1011 31 100.0 36 ............................... CGACGCCACAAACATATCACCGACGGAGACATGCTG 1078 31 100.0 36 ............................... CCTACGAGAGCCGATGCCATGACCGCTGCGCGGATG 1145 31 100.0 34 ............................... CTGATCGAGAAGGGCGAACCGCTACTGGTGAACT 1210 31 100.0 34 ............................... TGCCCGAAGGTCACCCGCGAGTCGTAAGCACCGA 1275 31 100.0 35 ............................... TGGCAATTTGCACGCTGTCCGAACTGCAAGGGCGC 1341 31 100.0 34 ............................... CGCGCCCACGAGCTGGCACGCAAAGCGATCGCAC 1406 31 100.0 34 ............................... CCATGCACGTGCGATTGCACGCGCACCAAACGAC 1471 31 100.0 38 ............................... AATGCGTTGCCCAGCGACTACGCCACGGCCGCTCAGCA 1540 31 100.0 33 ............................... AAACCAAGCCCACTATGTGGGATAGTGTATGGC 1604 31 100.0 35 ............................... GTAGTTGAGCCTGGTATCTGCCTCACGCAGATTGC 1670 31 100.0 34 ............................... CGGTGCGGTGTTGCCTTTCCCCATCGCAGCGGCG 1735 31 100.0 36 ............................... CGCAGCAAGGCATCTGCCGACGCCCGAGCTGCCGCC 1802 31 100.0 35 ............................... ACTGAGCGCCGGCAGCGCGTTGCCGACGCCCACGC 1868 31 100.0 36 ............................... CCTGGAAAAGGCGCTGACGCGGGTGCGGGCACTGCG 1935 31 100.0 34 ............................... CAGTTAAATCGTCGGTAGAGAGCGTCGCCAAGGG 2000 31 100.0 34 ............................... TGTTTGACCCGTTCGAGTGCGATTGTATGACACC 2065 31 100.0 34 ............................... ATGCCTCATGAGTCTGTATTAGATGCAATGGAGA 2130 31 100.0 35 ............................... TCAGCCACAGATGCAGAGTCATTGAACGTCATGTA 2196 31 100.0 34 ............................... TAGACAAACGAGGTGTATGCATCTAGCTCGCCTT 2261 31 100.0 35 ............................... AACGAAGGTGTGCCGCGTGCTGGCAAGAGCTACGA 2327 31 100.0 35 ............................... AGCACTCTACCATAGCTCATGTTTCACCCCTTTGT 2393 31 100.0 36 ............................... CGGTTGAAGTTCCAGAGCCTTTGACGGAGCTGAAAT 2460 31 100.0 35 ............................... TCCTGAACCTGATCCGGCCGTTGCCGACGAAGCGC 2526 31 100.0 36 ............................... CTGAAGATTGCAGATTATCCAGCAGAGGTGCACGAG 2593 31 100.0 34 ............................... CACGGTCCCCTTGCTCGCGCCGACGCCGCAGCGC 2658 31 100.0 35 ............................... TGTTTTGCTGCTGCACGTGCATCTAAGGCTTCTTC 2724 31 100.0 34 ............................... TCCCCCTATGCATCTCAATTATCCTCAGCAGGAT 2789 31 100.0 35 ............................... CGCCGTCAATGATTGGTCACAGCAGTGCTGGTACA 2855 31 100.0 35 ............................... AGCGCAACATGGTTACGGTGCTGGCTGAAGAGCGG 2921 31 100.0 33 ............................... ATTGATGCTTGCATTTACAACATAGGTTTCGCT 2985 31 100.0 33 ............................... ACAATCAATGACTGCCCACCAAAGTTGCCCCTG 3049 31 100.0 35 ............................... CATACTGCACCATTTGAGTCGCCCACGCCTGTATC 3115 31 100.0 34 ............................... TAAAGTAGGACTTCCCAAGGTTAAGAGACACACC 3180 31 100.0 35 ............................... ATGTTAAATCCAACCAGTACCCGGCAGTTATTGAG 3246 31 100.0 35 ............................... TTTTGTTCTGTGGATTTATGGGCGCGCTGTGTGGT 3312 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 47 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGGCCGATACTTCGCCGCGTGCCGGTTGCGGCGCAGCTCACGACTGATCGTGCTGGGCGCACGCGCCACTGCATCGGCGATGGCGCGCATCGACATCCCGGTTTCATATAACGCATGTAGGCGGTATCGTTCTGACAGGTCCAGCCGGCTGGATGACATGGGCAACTCCATTTGGTAGTGAAGTCGCTCAGGTCAGGTCGCCTGGATCACTTCACAACCGTTGGTGTTGCGATCCAGAGTTGAAGCCGCCGAGGTTTGATGGGTTGTTCAGACCTTCCCAAAGCGGTG # Right flank : TTCTTTGGGAGGCAAATTCAACTCTGATTCGCAACGCTTTTGAGGACCTCCTCGGAGAAGACTTCGAGGGGCGTTTTGAATCCAAGTATCTTGCGCGGACGATTGTAGAGCCGCTGCTCGATCCATCGCAGGTGCGCATCGGTGATGGTGCTGAAATCGGTCTGTCGTGGCAAGTATTGGCGTGTCAATCCGTTGGCATTCTCGTTGCTGCCGCGCTGCCATGGGCAGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //