Array 1 45617-46186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSNX01000040.1 Escherichia coli strain upec-128 upec-128_ctg_910, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45617 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 45677 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 45737 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 45797 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 45857 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 45917 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 45977 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 46037 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 46097 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 46157 28 85.7 0 ....................A...C.CT | T,C [46177,46181] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 55244-56532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSNX01000040.1 Escherichia coli strain upec-128 upec-128_ctg_910, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55244 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 55304 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 55364 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 55424 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 55484 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 55544 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 55604 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 55664 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 55724 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 55784 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 55844 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 55904 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 55964 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 56024 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 56084 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 56144 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 56205 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 56265 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 56325 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 56385 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 56445 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 56505 27 92.9 0 .......................-C... | T [56525] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //