Array 1 186697-187212 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRTV01000001.1 Gardnerella vaginalis strain NR010 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 186697 28 100.0 33 ............................ CATTGACGCTGAAATTGCAAACCGTGGAAACGC 186758 28 100.0 33 ............................ TACCGGAGTCTGGTATGTAAATGTAAATGATTT 186819 28 96.4 33 ..........T................. CTAAGCATCATCACCACCACGCATACGTCGAGG 186880 28 100.0 33 ............................ CTAATCTTCCTTGCTGGTTTGTGGCGGCTGGCA 186941 28 100.0 33 ............................ TGAAAAAGTACGTTGCAATGGCTATAGGCGTAC 187002 28 100.0 33 ............................ TAAAATGAGTCAAGTTTATGCAAGAGAAAGAAA 187063 28 100.0 33 ............................ CGTATTCGCACCTATGTGTTTTTGCCATAAGGT 187124 28 100.0 33 ............................ TACGGCGACGGTTGCGATTCCCGACGCACTTGC 187185 28 82.1 0 ..................T...C.CGA. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : TTATTGCCTAATGAAATTATTAAACTGACTGGTATTACACAAGATATGCTTGAATCTGACGGCGTAAGTATATCTGTGGCAATAATAAAATTTATTGAATTTATTGGTAAACTGCCGATAGTGGGATACAATGTCCCGTTTGATTTGGCGTTCTTAAATGCTGCAATATTGTCGAGCGGTAAAGAATCTGGTATCTCTTTTTCAGGGAATAAGGTTATTGATATTTCGCGTTTTATAAAAAAAGAAAGAATGTTTTTGCAAAATTATAAATTGGAAACAGTGTTGCGTGAATATGATGTGGCTGAATCAGTGCCACATAGAGCATTGACTGATGCTAGATTAACGGCGCGGCTTGTTTTTAAAGTAAAAGGATTGCTAAAGTTTCTTTCATAAGAGTATAATCTCGTCGTGGCGCTCAAAGTGGTGAGTTTGCTTTGAGAAGTAAATAGATTTGGCTGTTTCTTTTTGAAGATGTGGCTATTTTATTGGGATTTTTAAGT # Right flank : CGACCTGCCTGAGCGCTTAAAGCGTAGCGCGCGAAGGCAATTTGGAGCGCTGAGCTTGCTTAGGTTGAAAGCACGGTGTGCTTTCAACGCAAGCGAGGGCTGCCTTCGTCTCGATTGACGAAGGCAGCAAGATTATACGCATGGCGGGTGGTGATTTACTTCGGTGTATCGCGTGATAAAGTGGAAAAGCCGTGACGCAAGGGCGAGTTATCCTTTTTGTCCTCTTGGCGAAGACGCGCCACTGCGCTTTATATCTTTCCTGCATACGCGGGGGTGATCCTGGCAGTAAACATCACGCAGAAAGACAAAACGAGTCTTTCCCGCATACGCGGGGGTGATCCCTGCGGGTTTGTTACTTCTGACCCTATCAGACTGTCTTTCCCGCATACGCGGGGGTGATCCCAGTCATCCGTGGTTAGTTTCGGCTTAAATTTAGTCTTTCCCGCATACGCGGGGGTGATCCCGCAATAAAGCAAAATCCGATAACAAAAAGTCTGTCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 187464-188004 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRTV01000001.1 Gardnerella vaginalis strain NR010 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================================================================================== ================== 187464 28 92.9 33 A.......T................... TGGCAGTAAACATCACGCAGAAAGACAAAACGA 187525 28 100.0 33 ............................ CTGCGGGTTTGTTACTTCTGACCCTATCAGACT 187586 28 100.0 33 ............................ CAGTCATCCGTGGTTAGTTTCGGCTTAAATTTA 187647 28 100.0 33 ............................ CGCAATAAAGCAAAATCCGATAACAAAAAGTCT 187708 28 100.0 33 ............................ TGCGACTTGGAGTGTTATTCAGCTGGATTATGC 187769 28 82.1 181 ..................T...C.CGA. GACCTGCCTGAGCGCTTAAAGCGTAGCGCGCGAAGACAATTTGGAGCGCTGAGCTTGCTCAGGGTTGAAAGCACGGTGTGCTTTCAACGCAAGCGAAGGCTGCCTTCGTCTCGATTGACGAAGGCAGCAAGCTTGTAAGCGGGGGTAATCCTATGGTGGAGCTAGGGGGATTCGAACTTAT 187978 27 75.0 0 ...-..A.........T..TT.C...T. | ========== ====== ====== ====== ============================ ===================================================================================================================================================================================== ================== 7 28 92.9 58 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : GATCCTGAAAAAGTACGTTGCAATGGCTATAGGCGTACGTCTTTCCCGCATACGCGGGGGTGATCCTAAAATGAGTCAAGTTTATGCAAGAGAAAGAAAGTCTTTCCCGCATACGCGGGGGTGATCCCGTATTCGCACCTATGTGTTTTTGCCATAAGGTGTCTTTCCCGCATACGCGGGGGTGATCCTACGGCGACGGTTGCGATTCCCGACGCACTTGCGTCTTTCCCGCATACGCGTGGGCGCGACGACCTGCCTGAGCGCTTAAAGCGTAGCGCGCGAAGGCAATTTGGAGCGCTGAGCTTGCTTAGGTTGAAAGCACGGTGTGCTTTCAACGCAAGCGAGGGCTGCCTTCGTCTCGATTGACGAAGGCAGCAAGATTATACGCATGGCGGGTGGTGATTTACTTCGGTGTATCGCGTGATAAAGTGGAAAAGCCGTGACGCAAGGGCGAGTTATCCTTTTTGTCCTCTTGGCGAAGACGCGCCACTGCGCTTTAT # Right flank : CGTATCCGTGCCCCCGGTGAGACTCAAACTTATTCATCTGGTGAATGAACTTTACGTGGGACCCCTAAATCGTCTGCTATGTCGTCGTAGTTATCGCCACATTCATAAGGGTCTAATAAATTGTAAGCTTCGATTAGCAGCTCTTTAGGTGCACTCTTGTGTAGCCACGCGTCTACTAAATAAATATCAATTGCGATCGATGGTTCGCCTGCTCGAATAGCACTATTGGCTTCTTCTTCGGAAACCTTATCCATGTATGGCTTAGCATAAGGTCGAAGTTTATCAACCATGTCATAACAAATTTTCATCGTTTCTATCATCGTGTCCATTAGCTTTTTATTTCCTTCGTGTATCTATCTTATTGTGTGCAGTAAGATGCGTTTTCTATGCTTCTTTTCTATGCTTCTTCTACTTATCTATTTTGATTATGATAAAGTTACTTTTTATGTATTTTAATTAATTGATATTAGTATCACCTGATATACTTTTTGCGGAAGCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-2.65, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 594008-593828 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRTV01000001.1 Gardnerella vaginalis strain NR010 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================ ================== 594007 24 100.0 28 ........................ CTTTTTTTGGAACATTTGCCGGAAAAAC 593955 24 95.8 28 ..............C......... TGGTGTTTGGAACATTTGCGGGAGATTT 593903 24 100.0 28 ........................ TGGTTTTTGGAACATTTGCCGGAAAAAC 593851 24 91.7 0 ...A..A................. | ========== ====== ====== ====== ======================== ============================ ================== 4 24 96.9 28 TCCGGCGTTTGTTGTTGTTTTGGC # Left flank : ATATTGTGACTCTTAAGCCGGCTGCTTGGGAAATGACGGACGGCGAAACGGTGCTTGCAAGCGTGAATCAAGTGCCGCTTAGGTGCGCGTGGGGAATTACGATTCATAAGTCGCAAGGTATGACGCTCGATGCTGCGGTAATGGATTTGCGTAGGACTTTCGCTCCCGGAATGGGATATGTGGCGCTTTCGCGCGTGGAAAATTTGGGCGGGCTTTACTTAGAGGGTATTAACGATCGCGCGTTTAGTGTTTCTGCTGACGCTGTGCTGCTTGACGGATCCTTGCGTGAGGCTTCAAAGCGTGCGAGTGAGCTGCTTGCTGACGACGGAGCAGCTGCTTTCGTAACGAATACTGCGGAAGCCGATTCTGCGGATCAGCAGGAGTTCGATATTTTTGCCAGCGGTAGCAGCGTTGGCAGCGGTAGTAGCGAAGAGGACGAATTTTCTTTCGACGACGAGTTTTAGTGCGATTTTTTGTGGAACATTCTCCGGAGATTTTTC # Right flank : TTATTTGTTGATGCGCGTAAACAAATGTTTATGTCCTCATGCACAAATAGATTGGAACGCATGAATTCCAATGTACTTCGTATGTCTCAGCTGTTCCTTCGTACGCTGCGCGAGGATCCTGCAGACGCGGACGTGACTTCCGCAAAACTTATGCAGCGCGCAGGCTATATTCGCAAATCCGCTCCAGGCGTGTGGACCTGGCTTCCGCTCGGACTTAAGGTTTTGAACAAAGTTCAGGCAATTATTCGCGACGAAATTAACGGCATCGGTGCTCAGGAAGTTCACTTCCCGGCGCTTCTTCCGCGCGAGCCTTACGAGGCTACCAACCGTTGGGAAGAATACGGCGACAACATTTTCCGCCTTAAGGATCGCCATGAGGCTGACTACCTTCTTGCTCCAACGCATGAAGAAGTTTTTACGCTCCTTGTTAAGGATATGTATTCTTCTTACAAGGATTTGCCTGTTACTTTGTATCAGATTCAAACGAAGTATCGCGACGA # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCGGCGTTTGTTGTTGTTTTGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //