Array 1 14250-10624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNCN010000009.1 Flavonifractor plautii strain 1001713B170131_170501_H3 NODE_9_length_107626_cov_35.6349, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================= ================== 14249 33 100.0 35 ................................. AGGTATCGTGGAGGGAGTCGAATATCAATACTTGG 14181 33 100.0 36 ................................. GCCGTCTCTCCCCGGCAGAGCGCCAGGAACGCCTCC 14112 33 100.0 35 ................................. CCTCTGGACTGTGACGGCAAGCCGAGTTCGGAAAC 14044 33 100.0 36 ................................. ATGTTATGCTAATCACATCAAACACAAAGAGAGGTA 13975 33 100.0 35 ................................. CAGACTATCATCATGGCAAAGACCAGACACCCGAA 13907 33 100.0 33 ................................. GACACAGTAAGGCGGTGGACATCGGCGCGGAAA 13841 33 100.0 34 ................................. TGCCCGGCGGCCACCTGCTGAACAAATACGCTAG 13774 33 100.0 34 ................................. GGCCTGACTGGGCAGTACTGGGCGCCGACGCAGA 13707 33 100.0 35 ................................. TGGCCCTGTCCGGGCATGTGGTGTGCGTACAAAAC 13639 33 100.0 33 ................................. ATGAATCTGCCCTCCACCGCGATGATGAATTGA 13573 33 100.0 34 ................................. TGGATGGTGTTTTGCGTAGCGCAGGCGGTGGTGG 13506 33 100.0 35 ................................. CAACAGTTTATGCAGCAGATGAAGGGCAAAGACCC 13438 33 100.0 33 ................................. ATTACCGCGAACCAGGAAGCCCAGACCGCCGAG 13372 33 100.0 33 ................................. CTGAGATTTCCGCTTATTCGGAAAAGGCTTGGC 13306 33 100.0 37 ................................. TTTACCGCTCTCCTTGAGGGTCATAACGCCGAAGCGG 13236 33 100.0 34 ................................. ATCTCCCGTCGCTCTGTGTATGCGCTCCCATCCT 13169 33 100.0 34 ................................. TCAACTAAATCGAATGGACTACATACCTTATGCG 13102 33 100.0 35 ................................. ACCGGGGCAGTAAGTACTTCATACATGGCGTCGTA 13034 33 100.0 34 ................................. CGCTCCCGCGCGGCGACCGTCTCGATGATCGCCA 12967 33 100.0 35 ................................. CTCTCCGCTATATTTGCTTGTGTAAGACCCGTCGC 12899 33 100.0 36 ................................. CTCCACGGCCACCCGCAGCACCGTCAACACCTTCTG 12830 33 100.0 34 ................................. ACCGGCGTTCTGACCATCTTTGATGAGGGCGGAC 12763 33 100.0 33 ................................. ACCGGGGCAGTAAGTACTTCATACATGGCGTCG 12697 33 100.0 34 ................................. CGCTACCGTCTGTCCTGTATAGAGCCCGCCATAG 12630 33 100.0 35 ................................. GCTGCCCTCTTTCCAAGCGTGCTCGGTCACAATCA 12562 33 100.0 33 ................................. CCTGTCTTTGCTGTTTCGTTGGCACACTCAATC 12496 33 100.0 34 ................................. TGCTATGCGTGCTCTTGACGAATTGGAAGTTGAG 12429 33 100.0 34 ................................. CCCCCTGTGGCAGAATAAGACGGTTGATGAAATT 12362 33 100.0 37 ................................. TATCAAATTCTTTTGTAGCTGGCGCAGATGTTATCCA 12292 33 100.0 33 ................................. ATCCACATACCTCCATGACCATACATAGAAATA 12226 33 100.0 35 ................................. CCCTCCACCACATCTATAGTATACCACAAGCGGCC 12158 33 100.0 34 ................................. CCCTTCTTCTTCACGGGGGGCTCGTCGTCGTCGT 12091 33 100.0 41 ................................. GCCCCCTGGCGTTCATGCGCCGTTTCCGTCTCTGTGCGTCC 12017 33 100.0 34 ................................. CATGATAGCGTTAGCGAAATTACGGGCAGCGATA 11950 33 100.0 35 ................................. CAGGGCCAAGAACTCATAAAAATCAAGCTCCATAT 11882 33 100.0 34 ................................. TGTGTCATAGCCTGAACGTCATAGCCATAGCGCT 11815 33 100.0 35 ................................. GGGAGCTGGGTATACTTGTCGGCAAGATGCCAGAC 11747 33 100.0 36 ................................. ATCAAGAGACCCTGGCCTAACAATAGCACCAGAGCC 11678 33 100.0 34 ................................. AGAAACTTTATGAGAAGGATGCAAGAGGAGGTAC 11611 33 100.0 34 ................................. TACACTGAATGGGCAAGCAACGCAAAGGCTTGGG 11544 33 97.0 34 ................................C ATGTTTGTGACCTCCTTTACTGTACTTATAGTAT 11477 33 97.0 36 ................................C TGGAGGGCAGCTGTATCACCAGCGTTGAAACGGTCC 11408 33 97.0 34 ................................C ATAATGAGCGCGTAGGCACGGAAGGGGAGCGCAT 11341 33 97.0 37 ................................C TTCATCACATACCGGGCAACGTAAGCACAGGTTTCCC 11271 33 97.0 37 ................................C ATAAAAGGCATAGGTGAAATCATCAAAGCCTATCTCG 11201 33 97.0 34 ................................C GGCAACGGCCAGGATGGCTTTGCGCTCCTCCTCG 11134 33 97.0 35 ................................C AGGTGAAGACATCCATGGTTGCCCGTCTGCAAACT 11066 33 100.0 36 ................................. AGTAGCTCGTCAGCCTCCAGGCGCTTGTCGTTGCTC 10997 33 100.0 35 ................................. TGGATCTGGAAGGCCATACGAAGCTGATTGATAGT 10929 33 100.0 35 ................................. GAGGATAGCTGCGCCTCCCCCGGCGTGCGGGGCGA 10861 33 100.0 35 ................................. GGCATTGAGACGGGGGCCAACAGCTTCGGCTACCT 10793 33 93.9 38 ............A.........G.......... AGTGAGAAATACGACATCACCAAGCATCCCCGGTATAA 10722 33 93.9 34 ............A............G....... CAGCGGCTGGACCGCGGCCACATGGAGTATGTCT 10655 32 84.8 0 .....C......A...............-..CC | ========== ====== ====== ====== ================================= ========================================= ================== 54 33 99.1 35 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : GGACGCCTATCCGCCCTTTTTGTGGAAGTGAGGCCATTATGCTGGTTTTGATTACCTACGATGTCAATACGGCGGATGCCGCCGGGCGCAAACGCCTGCGGCAGATCGCCAGGCAGTGCGTCAACTACGGCCAGCGGGTTCAGAACTCCGTCTTTGAGTGTAAGCTGGATCCAGCCCAGTACAAGCTGCTTCAAGCCAAGCTGTGCGCAATCATGGACCCCGAACGGGACAGTCTCCGCTTTTATTCCCTGGGAAATCGCTATGAGCAGAAGATCGAGCACTTTGGCTGTAAGCAGACCTACCTTCCAGACGAACCTTTGATTTTGTAGCGTGCGAAGTCCAAGATGACACGCCTTCTCCGGCCGGTTCGCACCCAAAAAGCATAAAGGAAAGCTTAATGGAGCATAGGCGCGTTTGTTTTTGTATGCTCAGCCTTCTTCCCCTTGTGCAAATAAGCAAATTGAGCCAAGCAAACTCCCTGCTCTTTGGTAAAGTTTGCT # Right flank : CGTCTTACAGAGGCGCCTGAGCCGTTTACAGGAGCCACCGCATAGGGGCGCGGGTTGATTCAGATTTTTCACCCCGCGCCTCTATTGTTTGCGCTTCTTTTCGTTGACTGGTCTAGTAGGGAATGATATAATAGGATGATTATGACAAAAACTATGGTGGGAAGATTGTATTATGTGGATTTCAACTGACTGGAAGGACTATGAACTGCTGGACTGCGGCGGCGGCGAGCGGCTGGAGCGCTGGGGCAAGTATCTGTTGGTGCGGCCCGATCCTCAGGCCATCTGGCGTCCGGAGGGGCGGCATCCCGGATGGCGGAGGCACGACGCCCGGTACCAGCGCTCCTCCACCGGAGGGGGCCAGTGGGTCAAGAAGGAACTGCCCCAGCGCTGGACATTGGGCTACAAGGGGCTGACTCTCAACATCAAGCCCATGAACTTCAAGCATACCGGCGTCTTTCCAGAGCAGGCGGCCAACTGGGACTTCGCCATGGAGCGCATCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //