Array 1 428-899 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEWU01000036.1 Haemophilus influenzae isolate PTHi-3533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 428 37 100.0 42 ..................................... CAAATAATCATCATATCATATCTAGCCGACCAACAATCTATA 507 37 100.0 34 ..................................... ATAAAATCTCCTATGTAAGATAAGCACATTGCTA 578 37 100.0 32 ..................................... CATTACGCCCTGTCATACGTTGCATAGTCATC 647 37 100.0 35 ..................................... AACAACCTTTAACGCAACTTTGCGTAAAGCTTCAT 719 37 100.0 35 ..................................... CCCAATCGCTGTCTACTGTATTTACTGTTTTAGTT 791 37 100.0 35 ..................................... AATACAAAAACAAGGTATTTGATGTGATAAGAATT 863 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 7 37 100.0 36 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TGTAACAGAGGTGGTTGACCGACTCATGGAGGATTAGCGCCTCTCAGCTTGGCAAGTGCTGTGAACTTGCTACATCAATATTAGCCAACAAAACAAGAAGAATATGTTTGAACGCTTACTTGTTGTCACGATTGCTACAGCCATCGCAAGAGCAGTAGAAAACGCATCCAAAGATTAAACTTTGGCGGCATGCAGAGCCGAAAATCCGCTATTGTGTCATAATGTATTAACATTATAGAAATACTACTGGTGTATTAAAAAAACTCTGTTAAAATACGCCGCACTTTTGACTGAGTTTTGAAAAAATAAGAATGATAAAGGTTGTTCGATATTTAACCAAATCAATACCTAACTCTTCAGATATCAGAAAAAGTTGGAAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCAG # Right flank : CGAATGGGAAGTATTATAATTTTTACTAACTAAACGAGGAAAACAAAATGAGAAAAATCGAACAAAAAATGCTAGATTGTATCCAATTTGGGCATAATTTCAAACTAGGGAATACCAAGGTTTTATGGCACAACGGAGAGCTAAGGGTCTATTTGCATGATTATTGCATAATTCATAAAGTAAAAAATAAAATCACGCTAAAAAAGGGGCAAATTCTAGGAAATGGTGAACCTTTCATCTTTAAAACTCTTTTTAAGTTTGATCACAAGGTTTAAAAATGGGGGTTACTTTTAATGATAATTTTTAAAATTTGGATCGTTGGTTTCTTTTCGTTTTATCTTTTGCTTTATTTATGGGCTAGAAATGAAAGAAAAAAGCCCGATCCTATATTTGACAAAATAAAAGTGGTTTACCCGATCGTCAAGATTAAAACAAATTTATTTTATTTTAATGGTGCATATATCACGCCCGATCTGATAATCTACAAAACGCAAAAAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 47296-47471 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEWU01000003.1 Haemophilus influenzae isolate PTHi-3533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 47296 32 100.0 39 ................................ TTAAATAATTTTGTGGAAATGGAAGTAGAAAACGGTCTC 47367 32 100.0 41 ................................ GCTGACTCTATTGAGTCAGTAGCGGGTTCTGCGTTTGTCTC 47440 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================= ================== 3 32 100.0 40 AATCCCTTTGGAACAGGGCAATGTCTTTCGAC # Left flank : ATCTGTAAAGTCTTCAGGCGCGCCAACATTTGGCATTGAATTTTGATGTTCAAAACCTTTTTCCAGCACTTGGAAAGAAGCGGTTACATGACAAATGGTATTTTTATGTTGAATGGCTTTTACGCGTAATGCAGAAAAATTACGCCCTTCACGCAAGGTTTCCACATCGTAAATAATCGGATAGTGGCTGTCTCCTGGAGCAAGAAAATAGGCATGACAAGAATGCAAAATACGATCTTCTAGCGCTACCTGCATTGCTGCAGATAACGCCTGTGCCACTACTTGCCCGCCAAATACTTGACGAAAACCTAAATCTTGGCTTTCACCACGAAAGATTAAATCATCAATTTTTTCAAGTTTAAGAAGATGAATGAGGTTATTGAGAATATCTGACATATTGCTTTCCTAGAAGATAAGAAAAAGTGCTGTTATTTTAGCGGAGATTTTTAGGAATGCCAAAGCCAGCAATAATTTTAAGATAGAAGTAAAAACTTAATTTT # Right flank : TGCAGTGGGGTGTTAGAGCCTTGTGTGGCAAGGCTTCCCAGAGCCACTTTCCAACTTTTTCTGATATCTGAAGAGTTAGGTATTGATTTGGTTAAATATTGAACAACCTTTATCATTCTTATTTTTTCAAAACTCAGTCAAAAGTGCGGCGTATTTTAACAGAGTTTTTTTAATACACCAGTAGTATTTCTATAATGTTAATACATTATGACACAATAGCGGTTTTCGGCACCGCATGCCGCCAAAGTTTAATCTTTGGATGCGTTTTCTACTGCTCTTGCGATGGCTGTAGCAATCGCGACAACAAGTAAGCGTTCAAACATATTCTTCTTGTTTTGTTGGCTAATATTGATGTAGCAAGTTCACAGCACTTGCCAAGCTGAGAGGCGCTAATCCTCCATGAGTCGGTCAACCACCTCTGTTACA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTTTGGAACAGGGCAATGTCTTTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //