Array 1 62778-60528 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLJU01000071.1 Acinetobacter radioresistens strain Dog_1A_IMI NODE_6_length_151450_cov_107.288_ID_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62777 28 100.0 32 ............................ TAGCAATGATGTACTAACAGTTAAATCTATAT 62717 28 100.0 32 ............................ TTCCTTATTGGCCCTGTCGCACTTAGATTTAG 62657 28 100.0 32 ............................ CAAACGGGTCTTTTTTTATGCCCGCAGTTTGT 62597 28 100.0 32 ............................ AAACTGTTCTTGTAGCTCAGCAAACGTATAGA 62537 28 100.0 32 ............................ CTGCTGAGTATATGCAATATAGCGCCCGTTCT 62477 28 100.0 32 ............................ ATTCAAGATAATTCTCAGGATTTTGACCAAAT 62417 28 100.0 32 ............................ ATTGGCATCAAGTGTAGCTATGCCATTTGCTA 62357 28 100.0 32 ............................ TTGACGGTTCAACTGTTCCAGTGGCGCTTTCT 62297 28 100.0 32 ............................ ATTATTGCGCTTTGGCATCTTCTATTCTTTCC 62237 28 96.4 32 A........................... CAGGTCCGCGACTGAATCCAAGTTAGAACCGG 62177 28 100.0 32 ............................ ATCTATTCCGACACTTGCACTTGAACTAACAT 62117 28 100.0 32 ............................ TTCTCATACCCGCCCAACTGTTCAATCAGATT 62057 28 100.0 32 ............................ AAATACGCTTTAGACCAAGTGACGCACCCAAT 61997 28 100.0 32 ............................ GTCACGCTAACATGATTAGAGATTGAGTGTGC 61937 28 100.0 32 ............................ AATCCAAACCCACCCAATACAAGCGGTGGTGA 61877 28 100.0 32 ............................ TTCACGTCGCGGCAGTGAAATCGCGATTAACA 61817 28 100.0 32 ............................ TTCGGGCCACGCTCTAGTTTTTCTAAGCAGCA 61757 28 100.0 32 ............................ TCTCTTGTAATGGGTTTCATAATATAATATAG 61697 28 96.4 33 ............T............... ACTGTCTTCCCCTTGATTCGATTGTTGTGATCA 61636 28 92.9 32 ...T........T............... TAAGCAAAAAGTGTATTCAGGGGAATTTGAGA 61576 28 92.9 32 ...T........T............... ACAAATGTTGACCATTGAGCAGTATCCAGAAA 61516 28 92.9 32 ...T........T............... AGAAAATCAAAATAATCAGGTGCAAGCGGTTC 61456 28 92.9 32 ...T........T............... TGAGTATATTGAATTGCCATTACAAGCAAAGC 61396 28 96.4 32 ............T............... TTTAAAATTGCATCAAGTGACTTATATTTTTT 61336 28 96.4 32 ............T............... ACCAAAGCTTGTCTCTGTTCTACACTTGCCGC 61276 28 100.0 32 ............................ AGAGTCACCACACGTATGTAACGTGCCTGATG 61216 28 96.4 32 ............T............... AAGGTGAAACTATGGGACTAAGACCGTTCTTT 61156 28 92.9 32 ...T........T............... AAAAGATGAGCGGACCGGAAAGATTGGGCAGG 61096 28 100.0 32 ............................ TTGATGATTGCCTTTGATTGCAGTTTTTAGAG 61036 28 100.0 32 ............................ ACTTTCGGAATACTGCTGGGTCTGGGCAAAAA 60976 28 100.0 32 ............................ ACCATGCGACTGCACCGACTCATGACTCTCGA 60916 28 100.0 32 ............................ AAGATGACGTTTGGCTTCTTTCATCCAGCCCA 60856 28 100.0 32 ............................ ACAACGCCCGAATCCGCTGCTCGCTGTACTGG 60796 28 96.4 32 ............T............... AATCAGTTGTTCAACAGCGACAGACAATGCAT 60736 28 92.9 32 ...T........T............... TTGGAAAGATCGGCAGTGAAAACCGCCGGGTC 60676 28 96.4 32 ...T........................ CATCATTGCAGCATTGGATCTGATATTGTCAA 60616 28 92.9 32 ............T.........G..... TATTCCTTATCTTTCGGCTTGTCATCTATGAA 60556 28 71.4 0 ......T..TC.A..A..A.......TT | A [60530] ========== ====== ====== ====== ============================ ================================= ================== 38 28 97.3 32 GTTCGTCATCGCCTAGATGATTTAGAAA # Left flank : CATAACAACGATACTCCTTTTAAATGTTCGTCATCGCCTAGATGATTTAGAAAAGTTTCGCAATTTAATTACAAAATAGCTTAGGGTTCGTCATCGCCTAGATGATTTAGAAAAACCAGTTTTAACAGTTACAGGCATTCGTAAAGTTCGTCATCGCCTAGATGATTTAGAAATCCCCAGATTGCAAAAACTAAAAATGCTCCTTGTTCGTCATCGCCTAGATGATTTAGAAAATCAACACCAATCACTCGGCGCATCATTGGAAGTTCGTCATCGCCTAGATGATTTAGAAATACAAGATATTGATGATCAATCTATTGTAGATGTTCGTCATCGCCTAGATGATTTAGAAAAAAATAGCTCTGAATATAATTTGATGTCTGATGTTCGTCATCGCCTAGATGATTTAGAAATAGAGGGCTTGGAAGAAGCACATAAAGCANNNNNNNNNNNNNNNNNNNNNNNNNAGAAATGGCTTGGAAGAAGCACATAAAGCATTT # Right flank : TTTAAAGAGGCATAGTAAAAACTTCTATAAACAATAAAATTATTAAAAACAGAATTATTGTTTAATAAATCATCCAATTTCATCTACATTATTAAATTAAAAAGGTATTATGAGCCGAAATATGTCAGAATTTGATTAATTTATGATGTTCATGAGAAAACTGGGTAAGTCTCTTGACCTGGACTTGAGAAAATTAATACTTTTATTAATCGTATTCTGCGTATCTACACTCTTCTTTGTATCTTTAGGCGTGAGTTATTTAATCGTAAAAAACCAGTTAATCAGCAACTCTTTAGCGATTAACTCGGAATATGCAAATAAAATTGCCCTTAATACAGACAATCATTTTCAAAATATATTAAAAGAACTCAAGTACAGTGCTCAATCTTTGGGGAAAGACTTTAACAGTTTTGCGTTAAGAGAAGCAGAAGTTAACCGTCTAAAATACCAGTCGGATCACTATAACAGTGTAGTCATTGGTGATGCTGAAGGCAGACTCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCTAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 69546-70174 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLJU01000071.1 Acinetobacter radioresistens strain Dog_1A_IMI NODE_6_length_151450_cov_107.288_ID_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 69546 28 100.0 32 ............................ ATAATCAGCAAACGTATTAACTGAAAAAAGAG 69606 28 100.0 32 ............................ ATTAGAAGACGTGGACTCCTTCAAAGAAGGGC 69666 28 100.0 32 ............................ TTCAGCAGCCATTGCATTTGATGCAAGCAAGA 69726 28 100.0 32 ............................ TGCACCTGGTGTTCCTGTATCTAAACGAATCA 69786 28 100.0 32 ............................ TTTAAATTAGTTTCATATATTTTGGGATTAAG 69846 28 100.0 32 ............................ TCTGGCAATTTTTGAAGCACCGTTAAGAATGA 69906 28 100.0 32 ............................ GAAATAGTTAGATCACTTAAACGATAATGACC 69966 28 100.0 32 ............................ TTTCTCTAGTTTCTCTTAGATCATTTTTTCTT 70026 28 100.0 33 ............................ AGCATGTTACGGAAGAAAAGGCGCTTGCTCTCA 70087 28 100.0 32 ............................ TTTGGTTCAACCAAGCATTCTTCAAAATGACA 70147 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 32 GTTTGTCATCGCATAGATGATTTAGAAA # Left flank : CTTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATCAGGAAGCCTTCATTTAATAAGGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGTTGATTACTTAAACGAATCCCACCTTTTTCAATATTGGAGTTAATTGTTTTTAAACTAAAGTGTACTGATTCTTCTAAAGCGGTTATAAAAATATCAGTTTGTGGTTCAGGCATTATTTTCTCCATTTTTATTATTTAAACAATTTTTAACAGATTTTTTTTAAAATAAAAGTGATACATGGCATTATTGCGACAAATTAAGTCGTAAGGACAACAGGTTAAAAATACTATATGCTTAATAGTTTTAGCCTAAGATGATTAGGTTAAACTTTGAATTTTTAAAAAATTAAATTTAATTCAATAGCTTATATTATTTTCTTAATTTGAAGGTTTAGATTCATTAAAAAGTCTATACTATTGTTTTTAAGAGCTTTGCTTTGACTTGGCTCTA # Right flank : AATCTAATTTCAATATTTAAGACGACATATTTTGTCGTTAAAAGGTAGTATTAAGCGGATTAAGACTGTCTCTTTTTAAAACAAAAGAATATATTTTTATTATATTTAAATTTTAATAATAAGTTATGCATGTCATTCTCATTTCCGCTTGTGAAAAAAGAGCTTTAAAGAAAACAAGAGCAATCTTGGATAGCTATGCGATTCGTACAGGACATTCATCTTGGCAAGCACCCATGACCATGGATGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTGGCAACCCGACAAACTGCGGTAGCTGCGTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTGGGCGCAAAACATAAATTTGCATACGGCGGTGCCTATCCGGTTGCATCGACCAAGAAACAGCAAAAATTACTGATGCTGGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTTGTCATCGTATAGATGATTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //