Array 1 125405-125011 **** Predicted by CRISPRDetect 2.4 *** >NC_017262.1 Zymomonas mobilis subsp. mobilis ATCC 10988, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 125404 28 100.0 32 ............................ TATTTCAGGTGTCGCAGAACGTCCGGCAGTCG 125344 28 100.0 32 ............................ ATATTGTTCGCTTCAAATAAGCGGATAGGTAA 125284 28 100.0 33 ............................ ATTTTACAGATTGATGTGAAGTTAAACTTGCAA 125223 28 100.0 33 ............................ TTTAATCCTATGCCGACCGGTCCTACACCAAGA 125162 28 100.0 32 ............................ AGCGACAGGCTACCGGCCACCAGCGACAGGCT 125102 28 100.0 33 ............................ TGACCACGGAAGACTTGGCGCGTGGATAAATCT 125041 28 89.3 0 ............G.............TT | GTT [125017] ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGATTAGACACCGCCGTATATTTTTGAAGCATAGCCGAAATTGAGTTTAATTTTGGCCTGTTGCGGCATGGCTGCCTTTGTAAGCTGTTTTAACCGCGGATAATGCGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGTAATAAGAGCCATTCAATGCTGCCCATCGCTGAAGATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGATTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCAATTCAATATGTTACATATGGGCGTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGCAATTCTATCTTTTGCCTCTA # Right flank : TTATTGCATTGGGGTGGTTTTAAAGAGGGCATAACGCCCTCTTTTTTTAAGATTTTTATTGAAAAAACGGTTTATCTTTTATTGGGGTTTAGTCTTCTGCAACGACGAGGTCGGTCTCTTTTTTGCGGCGTTTTTCGCCGAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACAATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGAGTGACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGAGCCGTTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATAGGCATGGCGACATAATAGGCCATAGAGGCACCGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1812427-1811917 **** Predicted by CRISPRDetect 2.4 *** >NC_017262.1 Zymomonas mobilis subsp. mobilis ATCC 10988, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1812426 28 100.0 32 ............................ ACCGCTTAAACTCCCTTGGATAATCGTCTGAA 1812366 28 100.0 32 ............................ AAAACGGGGTAGTTTTACCCCGCTCCTTAAAA 1812306 28 100.0 32 ............................ GTAAAAGTCTGGTCACCAACATGGTCAACCGT 1812246 28 100.0 32 ............................ GCATCGAGATCATGTAACCGGTCAGCCAAATC 1812186 28 100.0 33 ............................ CTGAAGGGATGGTCGGCGACAGTGGCGCGACGA 1812125 28 100.0 33 ............................ ATAACAGAAAATGCAGATACGACCCCATCGCTT 1812064 28 100.0 33 ............................ CCCATGATGAGATTGCGCTTAAGCAAAATAGCT 1812003 28 100.0 32 ............................ ATATCCCAGCCTGATCCGGCTCCATCATTCCC 1811943 27 78.6 0 .............T...T..A..-.T.C | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAGATGCAGCCGGACAGGGCGGCCCTGACTATCGCATACAGCGTGAAGCTTTGAGTTCAGTCCGCCTTTCGTGCGTCCGATATGGCGGGGAAAAGCCCCTTTTTGAGCAGGGAGGCCGCTGTCCGGTGTGCTTTCAGATGTGTTGCATCGATCATCAGACGCTTCGAACGGCCTGCCTGCTCCGTCAGGGCGACGAAGATCCGGTCAAAGACACCCAGGCGGCTCCACCGGATAAACCGGTTGTATAAAGTCTTGTGCGGGCCATACGCTTTCGGGGCGTCTTTCCACTGAAGGCCGTTGCGGATCACGTAAACGATCCCGCTCAGGACACGACGGTCATCGACACGCGGCACACCATGCGCCAGTGGAAAAAACGGCTTAATCCGTTCCATCTGGTGCTCAGACAGCAAAAACACGTCACTCACAGCTTCACCTCCATCGGTAAACCTGTGAATCACAACAGCCCGCTCAACTCAAGAAATTAACAGGTCCTGAGCCTA # Right flank : TTATTTAAGTGTTGTTCTGTTTCATGGTTGGGGGCTGTTTTATCGGAGGCTATTCTGTTCTCAAAATATGTCGCCGGTACTTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAGAATAAGATTATTTGTGGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGGGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCCGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //