Array 1 17182-17414 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGD01000056.1 Geobacillus thermoleovorans strain SURF-48B scaffold_55, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17182 36 100.0 30 .................................... ATTCCGGATGTAACGACAGACGGTGGTGTC 17248 36 100.0 30 .................................... CCCACACGCTGGCGATTCGGTTTTTCATCG 17314 36 100.0 29 .................................... TCACATGGGAACAAATCGAAGAAGCGTAT 17379 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTCATAGTTCCCCTGAGATTATCGCTGTGGTATAAT # Left flank : GGGAATGGAAAAGGGAATCGAGAAGGGAATCGAACAAGGGGTCAAACAAGGGATCAAACAAGGTATTAAACAAGGGCGCCAACAAGGGATTGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGGTATGATGTCGACACGATCCACGAACTGACCGGGCTGCCGGTTGAGAAGATCGAACGGGTGAAGGGGTAAGCAGAGCAGACTCTTCGCCGTCGAGCCTCACATACATTGGTTTTGATCGCTTAATCTCTAAAGCCATCATGGATGGGCTTGGTTGACAGAATATTCGGGACGCGTTATGCTGAAGTTGCGGTTGCGGGGGAAAGCTTGATATGGCAACGCTTTTTGGATTTTTACCATACCTTATGAGGGATTGAAACGATGCCCCATTCCTACTTCGGGGTCGTTTTGTGTTTTTATCGTGCCTATGAGGAATGAAGACACCTGTTCTTCCTATAGCTTATCGGTAGTATGTCATTGCTTTAAT # Right flank : TGCCTCCCGTTGTTGTGTACGTTTCCTCGCGTCATAGTTCCCCTGAGATTATTGTAAATTAGCACATTATTTCAGAATCACTTTTTCAAATTATTTCAGATGGATTCTGAAATAATGTGCAAAATTTTTGCGGATTGTTCCGGATTTTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAGTTCCCCTGAGATTATCGCTGTGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 2404-2696 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGD01000068.1 Geobacillus thermoleovorans strain SURF-48B scaffold_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2404 30 100.0 35 .............................. TCCGAACGGCTTTAATGAGGAAGATAGCAAGAATA 2469 30 100.0 34 .............................. GGCGTCTGCCTCTCCCAACAACTCCGCGATCGCA 2533 30 100.0 38 .............................. TGATCCAGCCGGTTATAAACGTGAAAATGGTGAGCTGA 2601 30 100.0 36 .............................. TATTCATGCCCCCGCTCGCTTTCCGGGATTCCCACG 2667 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CCACCCCATCGGTTCACTTGCCTGCGGAGTGGCTCGCCAAACTCGCCTCCGTAGCGTCAGCGCCGCTGCAGCCAGTGAAAGAAGCGATGGCGAAAACGGAAAAAGCGGGATACCAAGAGGCGATCATCGGCCGACTGCTTCGAGACATAAAAAGTTAGCACTCGCCCTTGTTCATGCAAGTGTTGGGATTCCAATGTTTGTATTCGTCTTGCCTGCGATGGATGGGCAGGCGGCGCCCCGGTTTTATTCACCGCATGACGAGCGCTTGCCCTCGCTTAGGCAAACAGCAATCGGCAAACAAGGCACGCCAAACGCTAGGAAGCAGTCTTCGTTTGTCGTCGACCTCCAATGACGCAAAAACCCCAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCAAGGGTAGACTTGATTGACAGAATCTTCGAAACGTGTTATGCTGAAGTTGCCGTTGCAGGAGAAAGCTTGTTATGGCAGCGCTTTTTGG # Right flank : CTTCGGCAGATGATCAAAGAAGGCCTGGAATCCGGGATTAGATTCGGCACAGCGAACCGGGAAATCTGCTTGTGTCTACTAGTTGCAATGAATGAACTGGGGGTGAAGAAACCATGATCACGATCTATGACTTGATCGGCTACATTCAAAACATGGACAACATGGACAAATTGGATGAAATCATCAGTCGATGGTACTTTCAAACGTCTGTCTGGACATCACAGGTGAAAGAAGAAGTCAAAAAAGCGGTGGTCGAAATCCTACAACTAGGCGAACCTAAAGTGTACCAGTTTTTTGTGGATATGTACGGTCTTAAAATGTGAAGTTTTTATCGTACCTATAAAGGGATTGAAACGTCATCCCGGTCGTGACAATTGGAGTTCCTTCTGCCGTTTTTATCGTACCTATGACGAATTTCTCACTGTGAGCAGGATGCCGCCTTGGGGACGGCGAATAGAAAAAGAGAGACCATCAAGGTGAGGTGATTGAATGGCGATTGA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 5161-5650 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGD01000068.1 Geobacillus thermoleovorans strain SURF-48B scaffold_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5161 30 100.0 37 .............................. TCAACGGGATAAAAAGGAACTGTCGATCGGCCATATT 5228 30 100.0 36 .............................. ATTGTGAAGGAATTGGGGTACGAATGGGACCGGAAC 5294 30 100.0 36 .............................. GATTTCACCGACACTAGCCGGTAGGCGTTGATGAAA 5360 30 100.0 35 .............................. CACCTTACATCCGGTCAGGCACTCGCCTATTTTTA 5425 30 100.0 35 .............................. GCCGACTGTGCCGCCGCATTTGCTTCGTTTGCCGC 5490 30 100.0 37 .............................. CCGTTTGACCTTTATAATATTTTGGCTGTTATCAATG 5557 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 5622 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 96.2 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATGAAACGATCGATGGCAAAAAGAAAACGCATTTTTTCGGGCCGGACGACGACGTCTTTCCCCACCTCGTGGAGCTGAATTTCCGCCATAAATACGAAGCGTACTATGGCGTCGAGCCAGCAGAGAGATTGGTGATCCAGCCTGTCCATGTCCACCACCGTCATCGAGTGGTAACACGATTCAAAGATATGTATATTACGGGCTGGTTAGGCCATTATCGTCTTTCCTCTTCTCCCGAACAACTGACGTTTCTATACCACGTTGGCCTAGGCAGCCGCAATTCCCAAGGATTCGGCATGTTTCGGTTAATCAGCGAGTGAGCCATTCTGATTGTCGTCGACCTCCAATCGTGCAAAAACCCTAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCATGGTTGAACTTGATTGACAGAATCTTCGAAACGTGTTATTCTGATGATGACGTTGAAGGGAAAAGGTTGATATGACAACACTTTTTGG # Right flank : CCCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACCGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACAGGGGTGGGATGGATGCGCCGCAAACTTCGCGATCTTGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGC # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 914-415 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGD01000086.1 Geobacillus thermoleovorans strain SURF-48B scaffold_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 913 30 100.0 35 .............................. TCGACGGGTCACATATAAAGAAGAGCCAAGTTTCC 848 30 100.0 39 .............................. GTAGGTGGAGGATGAGAGGATGCAGACTCCGGCTGTCCA 779 30 100.0 35 .............................. TCAACCCCACAGTCTGTCTAAAAAGTCATCGGTCG 714 30 100.0 35 .............................. TATTCTCTCGCTGTCTTGGCGATTGGCTGGCTTCC 649 30 100.0 39 .............................. GCTACATTTGAAAGCTCTTGAGTAATTTTCAACTTGTTT 580 30 100.0 39 .............................. GCTGCATTTGAAAGCTCTTGAGTAATTTTCAACTTGTTT 511 30 100.0 37 .............................. TATCCGCTCATTGATGACCCACATTCCGGACATTTGA 444 30 93.3 0 ...............G....A......... | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 99.2 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAATCACCCAGATTGTGATGGGGATGTCTGCTCGGACGAGATGGGAGGAAATATGGAAAGGATCGCTCATTAATGTAATTATGCAGCAACTTAAACATGTTGATGTGCTTGTTGTATCTGACAGATAGAGAAGAGGGGCATCTTTGATCATAGTTCCAAAAGAAGACTCCCGTTCGCAATTCAAGCAATAAGCGGAAGATGAATGTCGGCTGGCGCCAGCCAAAACGTATGATAAAATCAATGTGCATTGCGTACAGGCTGTTGACGGACTTAAGCGGCTAAGCAGCGCACGAGACGAGAGGAAATTCAAAGTGCACGCTGTGCATAGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATCTTTTTACACACTTCAAGCCTACAGCCATCGTACATGAACACGATTGACAGAATTTTTGGATTATGGTATTCTGAAAATAACTTTGGAGCAAAAAGATTGATATATCAAGTGCTTTCTGGG # Right flank : CCTTCGTGTTTTGTGCGAACGATCGTCGCAATAAACGCTTTTCATCACACCGTAAGCAACTCCATGGAGCGCACATAGGTTTAAATCTGTGCGGTGGAGAGAGGTTAAGAGTTGGCGAAGATGACTGAAAGAGATGAATCAGCATTCGCGGGCTATGTCTGTGCGATACCGGCGATCCGCTTCTGCCGTTTGTTTTAGGCAGGAGTTTTTTATTGTTATACAGCCGCTTTATGTCCATCCCGAATTGTCGTTCCAGGAAGAGAAAACGGCGCAATTTGTGTACGAGACGCTGCAATCATTCGGCCATCTTGAGTTGTCGCGGCCGACGAAAACGAGCGTCATGGCGCGGCTCATTGGCCAACAGCCAGGCCGGGTCGTCGCCATTCGCGCTGATATGGACGCATTGCCGATTCAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //