Array 1 408550-407112 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015101.1 Thermococcus barossii strain SHCK-94 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 408549 30 100.0 37 .............................. GGTCGTGGACTACTTCGCGACGGGGTGAGAAAATGGA 408482 30 100.0 39 .............................. CGAATATAAGACCCTGGGTGGTGCCCTATGAGCGCCGCC 408413 30 100.0 35 .............................. ACGCTACTTCAAACGATACCCGGGTCTCTCGATGA 408348 30 100.0 37 .............................. TTATGGCAACGTTAACGCGCTCCCTGTACACTTTGAC 408281 30 100.0 37 .............................. ATGCGCACTCTTAAATTCTGGATGTAATGGTCTGGAT 408214 30 100.0 37 .............................. GTCTTAGGGTCGGTTATCTGCTTTTCGACGATGCGGG 408147 30 100.0 37 .............................. CGATGACGCTGACGAGGTTCTTGAAGTCATTGTCCTG 408080 30 100.0 36 .............................. CTAAAGTCCTCGGCCTCTATGTAGAAAGCGAGGTAG 408014 30 100.0 36 .............................. GTTTTCCTAGTAAAAATAAACTACCCCCTGTAACGG 407948 30 100.0 38 .............................. TTATCAGTTGCTTATCAGATGTTCATCTAATAAGGTTT 407880 30 100.0 38 .............................. GGTTGATGGTCGGGAAGATGGGCGCAATGTTCAGCCAC 407812 30 100.0 37 .............................. AAACTTCATCGGAGTAATACTTGAACTTTGATTCAGG 407745 30 100.0 37 .............................. GTTCTGGAATTGGGTGACTGGCTCGATCCAGGCGAGC 407678 30 100.0 35 .............................. GTAAATGTTAGTCAGACCTTTCTTGTCGCGGGCGT 407613 30 100.0 40 .............................. TCGAAATAAAGCGCCTTGTTGGGCGGAACGACGATGTAGA 407543 30 100.0 37 .............................. GAAGCGGGAAAGAAAGTTACAGTGAAGTACAATCCAG 407476 30 100.0 36 .............................. AACATCAAGTATCTTATCAAGTATGTACTTCTCAGC 407410 30 100.0 37 .............................. AAATTTTAGTGACGGTTGCGTTATCCAAATCGTCTTT 407343 30 100.0 37 .............................. CGACGTTCTCCGACAACGCGACCAAAACCTTGGCCGG 407276 30 100.0 36 .............................. GGCGGGTTGACTCATCGTAGGGAGCATCAAGAAGGG 407210 30 100.0 38 .............................. TCCTCTGGAAGGATAAGGTTATCCTCACCGTTCACTCT 407142 30 80.0 0 ...........G.C.C.T..A...C..... | C [407126] ========== ====== ====== ====== ============================== ======================================== ================== 22 30 99.1 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : CTAAAAAGGGCTTTTAGAGATTGCGATTGTGCCGTATCACGTTCAAACGTTCAAAATCCGCAGGAAATCCAGGTTCCGCAGGTATATCCAAAAACGCCGGCCGGTTAGCTCCCAGGAGGCCTTAAATAACTGCAGGTTAGTGTGTACCGTTTTGTCATATGTTTTTTCCAAAACATGACGAAATTTTTTCGGAATCCGTGGAAAAGCTGTAAAAGTTCCCAAAATCGGGCATATCCCGATAAAACAAAATATTTGGTTGATTAAAGTTAGCTAACCTACGATTTAGGCCAAGGAGTTGATGGAAAAGCCCGGGAACTCACGAATGAACAGAGGGTGTCTGCCCAGGCGAGCCTGTTCTGTCCTCCACTGGAGAATGCGGCTCCGAACAGAGCCCGGCTTGAAGATCCCGGAGAGCTCCCCCAAACCCCCTCCAAAGAAAGGCTTATAAAAATAAACGCATCTTATTCCTTTGTAGGGCAAAAGAAAGTAAAAGCCGCCCT # Right flank : CGGGAATCACTCCTCTCTCGCCAGCTCCATCTCGGTAACCCGCTCAAAGACGGTCTTGTGGTTCCCAAAGGCCTCGAACATTCTCTCAGAATAGTTCCTGGACGCCGTCTCAAGGAACAGTCTGAGGTTCCTGCTTATCTCGTCGTTCATCGGAACGTGGAGCGGCATCGGGTCGTAGTAATCGAGCCCCTTCATGAGGGCCGTCGAGAAGTACCAGAGTGTCTTCCTGACCTTCCTGCCCTTTATCCTCGAAAAGCTCGCCTCCATGCAGTTGAAGGCCGCGTGAAGGAGTACTATCATGTCTATCTCGACGCCCTTTCTTAGAAGCCTCTCCCGCTCGGAGTCCCACCGGAGGTCCTTTATCCTGTAGCCGCTTCTCGTCTGTTCGTCGTAGGGGACATCGATGTCGTAAATTCCCTCCACCCTGGGGTCATAGACGAGGACGTCGGTGCCGCCGACTATGGTGAGTCTTCCGTCCCTGACCTCCACAACGGTATTCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 859421-859919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015101.1 Thermococcus barossii strain SHCK-94 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 859421 29 100.0 37 ............................. ATTCGTCGTCGACATCTCTGAAGACCTGCTCGATGAT 859487 29 100.0 39 ............................. AGCGGTCCTGGTCGCGGTCGCGACTTGGCAACTGATAGG 859555 29 100.0 37 ............................. AGGCTTTAGGTTCATCGTGACAGTCTTGCTTTTCATT 859621 29 100.0 39 ............................. ACACGAAGTACTCGATCATCATGACAGGAACGTGGAAAG 859689 29 100.0 37 ............................. GCGTACTCTCACTAATGTCCCTGATAGGCTGGCTCAG A [859706] 859756 29 100.0 38 ............................. GCAAGAAGCGCTTAGGCTGGGCGCGCCAACATATGTCG 859823 29 93.1 39 ...............T.A........... GTCGCCTGCATCAGATTTCCCATTGCGTCGAACCAGCCC 859891 29 89.7 0 ...............T.A......C.... | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 97.9 38 GTTGCAATAAGACTCCAGGAGAATTGAAA # Left flank : GGTTCTCATGTTTAATGATTAGGAAACCTGGTTTATAAGATTCACCAGACCATGCAGAATCTTAAAGTACATACAGCATGACTGCGGCGGTAGATTGAAGGCCCAAACTCCCCCGAAAGTCTTTAGTAACCTTCCCACAGTATCGCACGCTTAGTTTCATTCATGTCAGATTTTGTAACGAAATTTTTTCGAAAATCACGGATTAGACAGCTCCTCCGCCAAAATTCGCGAAACCCCGATTAAAATAAAGATTTTCTGAGTACTGGCGATTTAACGGGAATATTTCCAAATTCCAGTCAGCTTCTGGCCCTGGAAGCTGACAAACAGGGACGGGACATAAAATACAGGAAACACCAGCGAAAAGTAAACGAAAAATGGCCGGCTCTTGTACCCCGTACAACTCCCCGGAAAAGTCCGCAAATACGAACCTTCGAGGAAAACCTTATAAATTTGAAGCTCGTCTAATTCTCTGTTGGGCGAAAGAAAGCAAAAACCGCCCT # Right flank : AGATGGGCTGGTTAGGTAGAATCAAAGGAAATAAAAAAGCGCCATCACTCCACCCTTCTTCCAAGCAGACGGTTTATTCTCGCCCGTATGCCCCTGTTGATCTTGACCAGCATGACGGTTCTTGGGCATCTGCTTGCTACCCTCTCGGGCACTTCACCGAATATCAGCCTTCTGAAGAGCGGCTCCCTCGTTGCACCCATCACCACGAGGTCGTGCACCCTGCATTCCTGGAGAATTGCCTGTACCGGGTCGCCGTCCACTATCTTAAGTTCGGCCCCCTTTATCTTCTCAACGACCGGCTTAAGGCGCTCTCTGAGCTTCTCCTCCGGCTCATTCTCAACATTAACGCTCAGCACTGTAACCCTGGTACCGTAAACATCGGCCAGTATTGAGACGAGCTCTGCGCTCGCGGCGCCCTGTTTTCCTCCCCTCGTCGGGAATAGTATGCTCCCTATCTTTTCTAGCTTCTCTGTATCGCCGGGTTTTATGACGAGAACGTT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCCAGGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 1133777-1133547 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015101.1 Thermococcus barossii strain SHCK-94 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1133776 30 100.0 37 .............................. GTGTTGAAGTAAATCGTGAGGACGTGGCTTACGAGGT 1133709 30 100.0 36 .............................. TAGTAGTTGTCAACTGTCGTGCTGTTTGATACGTAG 1133643 30 100.0 37 .............................. TTTTTCGACTGAAACAAGCTCCAGCTCTTCTAGTTTC 1133576 30 96.7 0 ................A............. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 37 GTTGCAATAAGACTCTGGGAGAATTGAAAG # Left flank : TGAGGGAGCTTGGATTTCGGGTTATGTAGCGGCTATCACGCTGTTCTATCCCCATTTTCGGTATTGGATGATGGGGCACGAGTTTAATGAAAACTCTGCCCTTTGAGGTTCCTGGAAGCTGATTTCTTCTCTCCTAAATTTGTAACCAACAGTAACACTCCTGCCATAATTTTAAGACGAAATTCTTTCGGAAAGTGGTCACGGGAGAGCAGAGGGCCCCAGGCAACCTGCACCCTGTTGAGAGTGGGGCTTTTGGTCCTAAAGGCTTTCTGGAGGGCATTGTCTCAAAAAACAGGGAAAGCCTCCCTCGGGAAGTCTATATGCTGTTCCAGAGCCCCATCAAAAAAGTCCCTGCAACAATCCCCTGCTGACAGGATCACGAACCAGCTGGCTTCAAACCAAAGGCCTCAGGGGGCCGTTTATGGCATGTTTTCCAGAAAACCTTAAATATCTGAGGCTTTCTAACAATTTAATGGGCAAAAAAGGGCAAAAGCCGCCCT # Right flank : CTCCTCACAAAAACTCCCCGAACAGCAGGTCTTCCCTCGTTCCTCCGGCCTTTTTGAAGACCCTTTCGCTCCAGGAGACGTTCCCAACGTCCTTTGGCCTGTGGGCATCGCTCGCGAAGGCCAGCTTTACTCCACGTTTTATGCACTCTCTTATGAAGCCAACATCGGGGGCGCGGTAGCGGGAGCTTATCTCAAAGGCCTTTCCGTTTGCTTCCGCCAGCTCTATGACCTCCATTAAGCTCTCCTCAGAGGGGTAGCCTATGTGTGGAAAGCTCGCTCCGAAGTGCCCGATTATGTCAACGTTCTCATCGAGGAGAGCAATCTTCACCAGCTCCACGTACTCCTCGGGATCGCTCAGCCATAGATGGACGCTGGCTATGACGTAATCGAGCTTTTCCACAATCCCCGCGGCAACGTCAACGCCGCTGTGGGTTATGTTGGCCTCTATCCCTGCCAGAACGGTTATCTCAGACTCCTCCTTCCAGCGGTTGATGTCCCTG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //