Array 1 3565-545 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHQ01000008.1 Klebsiella indica strain TOUT106 salmonela_mira_c8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3564 29 100.0 32 ............................. TTACCGGGGGAATATTACTTTACCCTTCCCCG 3503 29 100.0 32 ............................. AGCGAGTTTCTATCACTGGTAACAGGGGATTG 3442 29 100.0 32 ............................. AACGGCCACAACGAACCGTTTAAAGTGCAGCG 3381 29 100.0 32 ............................. CGAGCAGCGGTCGTCGGCGCAGCCTGAATGAC 3320 29 100.0 32 ............................. CATACTTGATAAAAAAGGACGATGCTGAGAAA 3259 29 100.0 32 ............................. GCCACATACAAAGATAAGAAGACCAATAAATT 3198 29 100.0 32 ............................. GCAAAACTGTTACGCTCTACGCTCGCCGATAT 3137 29 100.0 32 ............................. CTCGCGGCAGTAATGGCGGCGCAGCAACAGAA 3076 29 100.0 32 ............................. GCGACCGGGAGGGCTGGACATCCAACGGCGGC 3015 29 100.0 32 ............................. CAACCGGATACCGGCTTCCGGTAAGTTTCATC 2954 29 100.0 32 ............................. GGAAGAGGGTGTGACGCATTATTCCCTTATTG 2893 29 100.0 32 ............................. CTACAGCCAGTCTCTATCACGGATACGTTCCG 2832 29 100.0 32 ............................. TCAGAGCGCATTGCCGGTGGAGGCTCTTCCGG 2771 29 100.0 32 ............................. CCCAAAGGCAAGTTCCTCCCTGGCAAGTGTAA 2710 29 100.0 32 ............................. ACCGTAGCTTCCCTCGTGGTAGCTGTGTTCGT 2649 29 100.0 32 ............................. GACTGGACGCTGTTTGTGAGTGATATTTCCGC 2588 29 100.0 32 ............................. AGCAGGCAAGCAAAACATAAATAAGAGAACGC 2527 29 100.0 32 ............................. GCATTGTGATTAGCTCAAGGCATTCAACATTT 2466 29 100.0 32 ............................. ATGTAATCGCCAGCGCTTGCTGTCATGGTCCC 2405 29 100.0 32 ............................. CGATATCTGAAAAATCTGACAAAAGGGACATC 2344 29 100.0 32 ............................. CAGTCCCACCGCCGTTCGCGGAAGCACTGGTA 2283 29 100.0 32 ............................. AACAATGACGCTGTCTGCTGCGGTAGATGCGC 2222 29 100.0 32 ............................. GCCAGTCGGGCGGATTTAACAAAGAAGCGCGT 2161 29 100.0 32 ............................. AGCTCACGTCATCATCGCCCGTAACGCTATCC 2100 29 100.0 32 ............................. GCCATATTTCGAGGTTAAAAAATGAACGAACA 2039 29 100.0 32 ............................. GTGAGGTTGGCGATTATACCGCACCCGTTATT 1978 29 100.0 33 ............................. AAAACCAACGTTTGACTGTTTTCTCAGATTGAC 1916 29 100.0 33 ............................. GGGTATAGCGTTTTATCGTCTACAGCAGACGGC 1854 29 100.0 32 ............................. CAGGCCTTTAGCGCCTTTTGCCGTGTCACCGA 1793 29 100.0 32 ............................. CGTTTTATCTTCGTTGGCATAGACCATATTTT 1732 29 100.0 32 ............................. TTACCGACGCGCCGAAGGTCGATCACATCATT 1671 29 100.0 32 ............................. TGCAGATGGAAGAGACTCAGCCGATCAAAGAC 1610 29 100.0 32 ............................. TTTCAAACTGGCAGATAAGTATCCTTGTAAGG 1549 29 100.0 32 ............................. CTTTGATTTCTTTTACAGGCTGCGATCTCGAG 1488 29 100.0 32 ............................. GTCTGCTACGTGTACCCGCAGTGATAGCAAGT 1427 29 100.0 32 ............................. TGGCGGCGCACCAGAGCATTGCGGGAACGGTA 1366 29 100.0 32 ............................. CACACACAGCAGCAATACCAATAATCACTGCC 1305 29 100.0 32 ............................. CATCACTGAATGCGCCTCAACTAACTATTTAT 1244 29 100.0 32 ............................. GCGATTACACCTTTGGCCAGGGCGATGATACC 1183 29 100.0 32 ............................. AGGGTAACAAACAGGCTTGGACTGGCATCCCT 1122 29 100.0 32 ............................. GATATTGCCGACAGCAAACTGCGCCAGCCTCA 1061 29 100.0 32 ............................. CGAGCGTTGTGCGCCACCGTCAAAACACCAGG 1000 29 100.0 32 ............................. GGCTATAGATACCGGGTAACCGGGTGCATACT 939 29 100.0 32 ............................. CGCTGGTGGGTCTGGCGATATACCCAGTTAAT 878 29 100.0 32 ............................. CCGTTGCTTCGGTAGCCGTTTCCGTAGTATCC 817 29 100.0 32 ............................. AACGCAGTGGAGGTGCAGGTGATTGAGCAGGC 756 29 100.0 32 ............................. ACTGACCAAAGCGGGCCTGGAGCATGTCGGAC 695 29 100.0 32 ............................. TAAATCCAGAGCTTACCCGTTCTTCACTCTCC 634 29 100.0 32 ............................. TACGTCGAGCACAAGATGTGCATCACGCGCAA 573 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 50 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCTCGCTGCTGGTGAGATTGAGCCACCGAAACCTGCGCCAGATATGCTGCCTCCCGCAATTCCTGAACCGCAGTCACTTGCTGATAATGGGCATAGAGGGCACGGTTAATGAGTATGGTGGTTGTTGTAACGGAAAATGTCCCCCCACGTTTGCGAGGACGACTTGCTATATGGCTCCTGGAAATCCGGGCTGGCGTATACGTAGGCGATGTCTCAAAACGTGTGCGAGAAATGATCTGGCAACAGGTTACCCAGTTGGGAGGTATTGGAAATATTGTTATGGCCTGGGCAACAAACACTGAGTCTGGTTTTGAGTTTCAAACCTGGGGGGAAAACCGTCGTATTCCGGTAGATTTGGATGGCTTGAGGTTGGTTTCTTTTCTTCCCATTGAAAATCAGTAGGTTACCTGCTCTTTAATAAGGTGGAGTTGTTACTAATAGGTTGGTATATTGTTTATTTCTAAAAAATCCTATAGAAAACAGATATATAAATTTAGT # Right flank : GCCGATACTGGCTTCAGCAAAAGCTTTATCTAGGGTGTGTCCCGTAACTGTTTTTTGTACAATCAGGCACCTGTTTTGACCACAAAAGTACCTTTAACATGGCTCGTTACGATTTCCCTGATGATGCATGGGCGATAATTTCTCCCATGTTGCCTGCTGAAAGCGGGTCCTCCAAAGGTGGCCGTCCTTACTTCGCGCACAGACATGTCATGAATGGCATATTTTGGGTGCTTTGTTCCGGCGCTCCCTGGAGAGATTTGCCTGAACGTTACGGTCACTGGAAGACGGTTTATAACCGCTTTAACCGATGGTCTAAGGCTGGAATAATGAACAGTATTTTCAATAAATTACTCCAGATTCTGGATGAAAAAAAGTTGGTTGACTGGGATGTTATTGCACTTGATGGCAGTAATATCAGGGCCCTGAAAGCAGCGGCAGGTGCGAAAAAAAACATCCCGATGACATCAACGACCATGGGCTGGGTCGCTCTCGCGGCGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106100-105460 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHQ01000007.1 Klebsiella indica strain TOUT106 salmonela_mira_c7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106099 29 100.0 32 ............................. GCAACGCCGAGCCGTTGACCACGCCGGATGGT 106038 29 96.6 32 ............................A GGTAAGCTCATCACTAAGATGAGGAGAATACC 105977 29 100.0 32 ............................. GACCGGGCGTGAATAAACGCTATTTATATGGC 105916 29 100.0 32 ............................. CTTATCTGGCGCGGGATGCATGTTATCTGGAG 105855 29 100.0 32 ............................. CCCGCGCGGACGTTCTTGCGGAACAGCACACA 105794 29 100.0 33 ............................. GCCTATCTGAGCAATAAACATCGCGATATCAGC 105732 29 100.0 32 ............................. CGCGAGCACGGCAACACGACTCTGCACGACTG 105671 29 100.0 32 ............................. TATCGGCAATCTGGCAGAAACTATTGCCTTCA 105610 29 100.0 32 ............................. CGGAAATGGTCGCAGCTCTTGAGGCCTGGACA 105549 29 100.0 32 ............................. CAGGGAGTATAGTTTTATGCTCAGAAAAGTTC 105488 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 ATGTTCCCCGCGCAAGCGGGGATAAACCG # Left flank : GTATTCTCAAAAGGTAATATTCAGCGTCTGGTCGGGGCGCTGGTGGAGAGCCATCGGCTGACGTTAAATACCCGTTATCAGGTGGACTATATTGAAACGCTATATGGTCTGGTGCGCTCCCGGCTGGCGGTGGCGATTTTGCCTGAGCTCTATACCACCCACCTTCAGGACCCTGCGTTGAAGATTGCTCAGCTTCAGCAGCCAGCGCTGACGCGGACCGTGGCGCTTATGCGCGGGCCACAGCCCCTGCCGCCGTTAATTGAAGCGTGTTTTTGTTTACTGCAGAGTTCGCTGCGGGAAGTGGATTTGTAGAGGCATTCTGTAGAGGTATAGCTATCGCCGCTTGTTTTGGTGAAATACGAGAGAGGCAATGGAATACAGTATCGTGTCTTTTAAAATCAAAGCGTTATAGCTCTTTAATAAAATCATGTTGTTGCAAAAATGTCGGTAGAATGTTTTGTGTCGATAAATTTATTATAAAACAATAAGATATATTTAGT # Right flank : CGCAATGTGCTAACCGAGCTAATGAAGGCTCGTGGTCTGGCTACAGTCTTCCACACTGATCTGGATGCCCTGAACGCCGAACGGGTAAGGATTCAAACTGACGACCAGTAAGAGGCTGATGACAAACCTGTATCAAACATTGTGCTCGCATTTCTACCGGATGGCGGCAAAAGCCTGACCTGTCTCATTGGCAACAGCGCTGCGCCGGTATGGTGGCCCGGACAGGCTCAGCGCCTCCGGGAAAGGATGCTAAGGCAGATGCTTGATCAGCACGTCGGTGGCCAGGTGATTAATGTATTCCATAGAGTGCGAGGAGAGCACGCCCAGCAGCCGGTTATGATGCCCGGCGATAATCAAATCGATATTTCGCTGGCGCACGCACTCTTCAACATCGGCAAAACGACGAGTGGTGACCAACGAGAGCGTCTGCACAGGGATAGAGACCGTCGCCGCCAGTTCGCTCAGCAAGGCTTTAGCCTGAATGACCTCCTGAGAAACGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCAAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //