Array 1 33288-34834 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPOE01000006.1 Gordonibacter urolithinfaciens strain ResAG-43 ResAG43_contig_006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33288 36 100.0 30 .................................... TGCATGTAAAGAATAATTTCGGAGTCATTG 33354 36 100.0 30 .................................... CCAGCACGCCGGACGCCAGCGCGTCCTGGC 33420 36 100.0 30 .................................... CAGCGCCGACGAGAAGGAGCTCACGGACAC 33486 36 100.0 30 .................................... AACCGTCGTGCCCCTTGAACACGATGATGG 33552 36 100.0 30 .................................... CATGGTGGGCAACGACCTCGTGCTGGGCCG 33618 36 100.0 29 .................................... TAGGCGAGACGGTGTACGCGCTGCAAGGC 33683 36 100.0 29 .................................... TTGGAATATGCACAAATGCCGATCAACAT 33748 36 100.0 30 .................................... CCTTGGCCGCAAGGCCAAACGCATCGGATA 33814 36 100.0 29 .................................... TTGCGCAGTAAGGCACACCGCTGGTCCCG 33879 36 100.0 30 .................................... GATACCCTTTGCTGGGATGATTATATATGG 33945 36 100.0 30 .................................... CTTCCTCGGCATCGAGAATGCGAACACCGA 34011 36 100.0 30 .................................... CTTCCTCGGCATCGAGAATGCGAACACCGA 34077 36 100.0 29 .................................... AGATCGACGAGGGTCGCCGCTGGATCTAC 34142 36 100.0 29 .................................... TCAAAAACGGAATCGTCCCTGTCGTGAAG 34207 36 100.0 30 .................................... GCCGGGGCGGCAGCTTCGGCCTTTTCTATT 34273 36 100.0 30 .................................... CCCGACCGAAAGGCCCAGTACATTCAGGCG 34339 36 97.2 29 ..........G......................... CCGAAAAGCTCCGGCTTATTGCACGAGGC 34404 36 97.2 30 .........T.......................... TAAACGGTTTGAAGGACGGCATCATGAGCG 34470 36 100.0 30 .................................... AAGCTCGCAAAGCTCGTCAGCGGAATCGCA 34536 36 100.0 30 .................................... GCCCGAGTTCTACGCCAACCGCTACAAAGA 34602 36 97.2 29 ...................T................ CCTCGCGCACGTACTCTCGCCTGTCAATG 34667 36 91.7 30 ..............G.......G.....G....... AAGCGGCTGATGCGCTCGTCGTATGTGCTG 34733 36 75.0 29 ..A..A.TA.G.....G...C.....T.......G. TCATCTTGGGCGCGTAGCCTTCGGTAGCC 34798 36 77.8 0 ..........G...G.TGG.G.........A....A | T [34831] ========== ====== ====== ====== ==================================== ============================== ================== 24 36 97.3 30 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Left flank : CGCTTATCGGCGAGGTGCTTGAGCGTTTGGAGGACATGGTTTTGTCCGAGGACGAGGTGCGCCAAGAAATCGAGGCGGCGGGCTTGGCTTTGTCGAACCGGGTGGCATCGCTCGGCCTGCGGCTTCAGTCGGACTACGCTTTTGAAGTACAATGGGAAATGCGAAAATACCTGAAGGCCTTCGATTTCGGCGTCGAGATCGATCCTTCCGACAAGCTCCTTGACAACTTGATAAAGTTCTTGAAGTTTGCGTCGGACGCTGCGTTCGAAAAGCAGTTGGTTTTCGTGAATTTGAAAAATTTTCTGACCGGGGAAGAGGTCGAAGAGTTCTATCGGCAAGCGATATTTTCGAAGTTGCACGTGCTGCTGCTTGAGAACGCGCCCGATGACGCAACGTATGAGATTGAGAGGAAAATGCGCATTGACGTGCATTTTCTGCAATCATGAAAAGTTATGCCAGCCGGTTGTCCGTTCTTCTGCAGAAAGAATTTTGCCCCAACG # Right flank : ACGAATAGGGTGATCGACTCGCGGGCATCACTTTATTTCGGGGCGATTGCCTGTACCATAATAGGGATAGATAGTTTATACTCGCACGTAGGGATTGCAAGCGAACCTGTTGCGAGGAGGAACCATGGCCGTCAACCGTCAGAAGCTCAAGCTGCTGTATCTCATGCGGATGCTCGAGGAGGAGACCGACGCCGAGCAGGGCCTCACGATGTCGCAGATCCTCGAGCGGCTGGAGGCGCAGGGCATCACGGCCGAGCGCAAAGGCATCTACCGCGACATCGAGGCGCTGCGCGAGTTCGGCCTGGACGTGCGCACCTACCAGCGCGCGCCGGTGGAGTATGCGCTGGAACGGCGCGACTTCGCCTTCCATGAGCTGTTGCTGCTGGTGGATGCCGTGCAGAGCTCGCGCTTCCTCACGCAGCGCAAGAGCGACGCGTTGGTCGAGGCCGTGAAGAGGCTCGCGTCCGCCCGCCAGCGCGCGCTGCTCGACAAGCGCCTGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 69205-70729 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPOE01000010.1 Gordonibacter urolithinfaciens strain ResAG-43 ResAG43_contig_010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 69205 31 100.0 33 ............................... GACGCCATGTGTCACATCCGGCGCCACTACGAG 69269 31 100.0 35 ............................... GGCGGCGAGTTCGTGGCACCGGAAAAGCAGCTTTG 69335 31 100.0 35 ............................... GACACGACCACCATCCCGGCGTTGCGGGTGATGAC 69401 31 100.0 34 ............................... ATACCGAAGGCTACGCGCAAACGTAAGAGACGAA 69466 31 100.0 33 ............................... CCCCACGGCGTCCATGTAATCGTCGCCGTCCGT 69530 31 100.0 37 ............................... GCGCCGGGCTCGGTCTGGAGAGCTCGACATACGTCCA 69598 31 100.0 33 ............................... CAAGGTATTGACTCTGGTAAAGGGTTATTTTCA 69662 31 100.0 36 ............................... CAGAGCGGGCGGAGCGTCCACCTGCTGCCCCTTCTT 69729 31 96.8 33 ....................A.......... CGATGCGTAGCGGCTCGGCACGCCGTTGCGCTT 69793 31 100.0 35 ............................... CAGCACCTCCTCGCGCGAGAGCGCGGCCAGCTCGG 69859 31 100.0 33 ............................... CATATGGGTGCCCACGGGCATCTGCGATATCAA 69923 31 100.0 33 ............................... TCTCCTCGGTCACGAGCCATGTGTTGGTGTACC 69987 31 100.0 34 ............................... CAAGGCCCTTCGCGCGAAAACGTATTGCTTCGAG 70052 31 100.0 34 ............................... GGACGGCGAGTATGCTCACGTCGATCGTGACATG 70117 31 100.0 33 ............................... TACCACGCGAAAACGCGTGGGATTCTGCGAGAG 70181 31 100.0 33 ............................... CACGACCACCATCCCGGCGTTGCGGACGATTAT 70245 31 100.0 35 ............................... GAAGGGGGTGTACGACCTGTGGGAGTGGCTCCAGG 70311 31 100.0 33 ............................... CGACGGGTCGCTGCAGGAGTCGGTGCTGGAGGA 70375 31 100.0 35 ............................... CGCGGCCTCAACCTGATCCTCGGCGCGACCAAGGA 70441 31 100.0 35 ............................... CACTCGGCCCTGCTGCGCGTGGCGCGGCACATGGA 70507 31 100.0 32 ............................... GCCTCGACAACGTCGGCGTAGGAGTCCACGGA 70570 31 100.0 33 ............................... CACGCGGTAGTGCATGGGGTGCACCGTGCTGAT 70634 31 100.0 34 ............................... GCTCCGTCGTTTGGCGTTGTCGGTGCGATTGCGG 70699 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 24 31 99.9 34 GTTTCAACCCGCGAGCCCGTGAGGGCTCGAC # Left flank : GCACCGTGGCGTCCGCTTCGCCAGGCACGCTCACCTTGAGCGTGTCGCCGTCGACCACGCGCACGACCTGGGCTTGCTGGAGACCGTCCCCTACGGGGGCGATAGTCGCTTGGCCGTCTCGGCCCGGCGCGGCATCCTCCGCGACCCCGCCGCCCGCAGCGCCGAACCATCCAAGCGCGGCACCGATCACGAGCACGGCCGCAATGGCGAGGGCGGCAAGCGGGTTCTTCCGCGCCAACCGCCTTAAGGCGCGCCCTGCCTGCTGCTTCACCGACGCCATGGATCCCCTTCTCCCGTTTTTCTACGAACGAGAATTATAGACCAACTGCTTGGAGATCGCCGCAAGCTCCAACCTTCGCCGAGCCTCCTTGCAGGTAGCCGGGATTGCGCTAGCCGGCTCGCCGCTCGTCGCTACCGCCCGTCGAGGGGTGCGACATAGCATGTGCGCGGAGTCGGGCGGGCGTACACAGCTGGTCGATGCCGGCTGCTGCCCCCATGAG # Right flank : CTGTCAGGATATGCATATATACGTATATTCTGATTATCATATTCACATTAGACAATCAGTCCGCCCCATGAACAGCTATCAGCGGGCTTATGAAGCTTAAAACCTGCGCGAACCTCCCGAATGGCGCGCCATCGCTTGGGGTTCGCGCAGCACGCAATAGAGCTTCTACATTGTCAAGGTGCGCATTTCCTCTCACACGCATAGGAGCCCTTCCGGGTCATAAGCCTCCTTTGCTCCCACGTGCTCGACTTTTCGCTTCCAGTTCTTCCCGAGATTGTAGAACCGTAGGCTGTCACGCGTCAGGTCGGCCGCCTTCATCAGCTCGCTCTTCATTGTCTCAAACTGCGCCGGATCGAGCGAACATTCGAACACCGAGTTCTGCACGCGTTGGCCATACTGCACGCAAATCTTCGCAACCCGGCGCAACCGGCGAGATCCCTGCGGGCTTGCCGTTTCCACATCGTACGTAACGAGCACGTACATCGCTACCTCCAAATGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACCCGCGAGCCCGTGAGGGCTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 81504-80284 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPOE01000010.1 Gordonibacter urolithinfaciens strain ResAG-43 ResAG43_contig_010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 81503 32 100.0 34 ................................ ATCGACCACATCTATCAGGCGTCCGCGCAGACGC 81437 32 100.0 34 ................................ CTGGACCGGGTGCTGCTGCACGAGGCGGCGCACT 81371 32 100.0 34 ................................ TCCATGTGCCGCGCCACGCGCAGCAGGGCCGAGT 81305 32 100.0 34 ................................ ATCGACCACATCTATCAGGCGTCCGCGCAGACGC 81239 32 100.0 33 ................................ CTCTTGAGGATCGAGCGGTAGGTCGAGCCGTGC 81174 32 100.0 34 ................................ TTCTTCGATATGCTGGCCAAGACCGCCCACAAAC 81108 32 100.0 33 ................................ ATTTCGCCCTCTCCGTTTCCTCGTGTCACGCCG 81043 32 100.0 33 ................................ TCCGTGTCGTACCGCTTGCCGTTTATGGTCTTG 80978 32 100.0 33 ................................ CAATGGACTCGTACTTTGATAATCACGCCGGAC 80913 32 100.0 36 ................................ AACGAAGCGGTTGACGCCGTTGTAGTTAACGGGGAT 80845 32 100.0 34 ................................ CACAGGCTGGAGCGGCCTGCGGTGAACTCCTTGG 80779 32 100.0 33 ................................ TCTCTGCTCGAAGCGGGTGCCCAGGGCGGCGCG 80714 32 100.0 35 ................................ TCCTTGGTGGCCGCAGGAATTGCCGCCGGCTGGAT 80647 32 100.0 34 ................................ TCCATGGTGACATGTTGGTGACACCGGGTAGGCA 80581 32 100.0 35 ................................ CACCAGCCCGTGCGCTCGCCCGACGAGGTGGCGCG 80514 32 100.0 34 ................................ AAAAAAGTATCAATACGGAGAAGGTTACACATGG 80448 32 100.0 34 ................................ CGCGGTATCGGCGTCTACGTGGACGAGGGCCTCG 80382 32 81.2 34 ......TT..TCG..................C TCGAAAGAGAGCGCCGAGTGGTAGCCTGAGCCGT C [80368] 80315 32 81.2 0 ..T..A...TTCG................... | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 98.0 34 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAT # Left flank : GGTCCCTGCATCGGCTCGGTCGGGCTCATCCCCGACCCGCAGCGGCGCAACGTCGATGCCCTCATGCTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGCGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGATCGCTCTCGACGCGTCATCGAGAAGTGCGGCTTCGAACGCGAGGGCGTCATCCATCGCGCCGAGCCCGCTCCCGACGGCACCATGCAGGACCTGGCGACGTACTATCTGACGCGCGCGTCATGGGAGGAGGTCTCGCGCGAGAGCGCGCGAAACGGCGCGAACCCGAAGCTCTGGCAGTCCACTCAAGAGGTTCGCGCAGAATGACACGCCCAGAGGGATAGCTTGCTGGTTGCGCAAGGTGCTACGCATCTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTGCCA # Right flank : GCCGCTGCGCTAGCTTCCGATAAAACGAGTGATAGGCCTCGGCCTCTGCGAAGCTACCTGATTTGTCACTGCTGCAGTTGCGAAAGGGCTGTGAATTGGGTGCGCACCGTAGCGGTATCGCGCTCTTAGCACCGGTTTCGACAGACATTTGCGTCCCCATGCTACAATGCGCTCATGATGCGCGAGAGCGACATATACGAGCTGCGGCTGTTCGATCGGATCCTGATCGTCTTTCGCATGTCGCGCGGCGAATACGGTGATCTTTCAGTTGAGGTTCTCTCGGCAGACTCGTCGGCAAGTAGCCTTCTTCCGTTGTCGTTCGATGGAGAGCCAACCGACGAGCGTCTCTTCGAATGGATTCGTCGACGGCGCATCCCGAAGAATCGCGCCTATGTTGACGAGATACTCAAGTCGTGCGGCATCGAGTCCGACGATGCGAAATCGATCATCGATGTGAGCAAGGGCCTTTCGCTCAACGATTCCTATTGGGTTGTTCCTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //