Array 1 33131-34504 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFI01000020.1 Marichromatium sp. AB31 NODE_20_length_54939_cov_9.808199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 33131 28 100.0 36 ............................ ACTCGGACGTTGAGGCGATGATCGACGAAGAGGGAG 33195 28 100.0 36 ............................ TGATCGCTAGCGGTGCGCGTGAGATCATCGTCACCC 33259 28 100.0 36 ............................ TGCGGATAAGTCGGCGCTCGCGCGCGACTATGGGGC 33323 28 100.0 36 ............................ ACGCCGGCCCAGCGCAACGCGATTGGCAACGCCATC 33387 28 100.0 36 ............................ GATCAGCAGACCGTCTGGTAACAGGCGTCCCCAGGA 33451 28 100.0 36 ............................ ACGATCGCCGCCAACCCGCCCTGCTCCCGGCGCACC 33515 28 100.0 36 ............................ AACTCCTCGCCGCCCCTGTCGTCATACTCGTAGACA 33579 28 100.0 36 ............................ GGGGCCGTCAGCGGGGTCGGTGGCGTGATCGTGGTA 33643 28 100.0 36 ............................ TCCATCCCGCCGTCGCCCACCTGCGCGCCGTCTCGC 33707 28 100.0 37 ............................ GACGTTCAGGATTCGCCCCCAAACGGCAAGACCGAAG 33772 28 100.0 36 ............................ TGTCGACCTATTACCTCGATGGCTCGCGTCGGCGCC 33836 28 100.0 36 ............................ AACATGGGCATCACCCTGCGCACCTACCGGCGCCAC 33900 28 100.0 36 ............................ CCGAGCATCACGTCGGCGCTGCGCTGGTACATGTTG 33964 28 100.0 36 ............................ GATGCGCTCGACGCCGGCTCGATCGGCCTGAGCGAG 34028 28 100.0 36 ............................ CATAAAGCACGCTAGCCTTGCGCTGTTCCGGGGCGC 34092 28 100.0 36 ............................ TTGTTGAAGTTCGCGCGCTTGACCAGCCAGCGCAGA 34156 28 100.0 36 ............................ ATGTCTGCCAGATTCTCGGGCAGCTCGGCGACGAGC 34220 28 96.4 36 ....................A....... TTTCAGGCGGGTCAGATTGACTGCCGAGGAAATCCG 34284 28 85.7 37 .........AT..........C...T.. GGAGACGGTAACTGTGTCGGTCCCGACTGCGGTGATG 34349 28 82.1 36 ........AT.........AA......T TCTAGCACGCCTGCCATCTTCATCAGTTGCTTGAGA 34413 28 82.1 36 A...........G.A..A..A....... ATAGGTCGCGAGTCTTTTCCATTGCGTGATAGATGC 34477 28 78.6 0 ............CTC.....A.A.C... | ========== ====== ====== ====== ============================ ===================================== ================== 22 28 96.6 36 GTTACGAATCCCTATAAGGGGTTATGAG # Left flank : TGAAGCACTTGGACTCGAACGACAGGTTCTCGAGGTTTCCGAGTACGAATCATTCAAGCGGCGGGCTTAATCATGTTCATGCTCGTCACGTATGACGTCGAAGCGAAACGGACCAGAATTTTCAGAAAAATCCTGAAGCGCTATCTCAACCACGAACAATATTCTGTTTTCTCTGGAGACATGACCGAAGCGGAAGCCGTGCGCTTGCGCCAAGAGCTGAGCGCAGCCATGCTCCCAGAGGACAGAATCACCGAAATCACAGCAGAAAACCGCAAGAATGTAGAGGTCACCCACTTGATCAAGGCAAAATCCGGCAAAGGAGCAGTCAGTCGTAAAGCGGACACCAGACACAAGACCGATTACGGCGTCTTGTAGCCCCCAGACTTCTATCGCCTGTGAAGTTTCCAACTACAGACTCCGACGCACGGCCATCAGCCTCTACACAAAGAAAGTCAACACAAACATCATTCAACACTACAGGAAACACATCAAAATCGAGG # Right flank : GCAGCCTCTAAACAGATCTTGGGGATGTCTGGCATGGACGACACCCCCTATGAGAGCCGACAGACCTCACCCAGCGGCGTGGCGCTGGAGACGCACCAGATCAACATCTGGTGTTAGGATGGGGTATGGAGCACCGTCCCAGGCGGTGTCCGCTCGCGTGTTGACACGGCCCGGATCGGGGCCGCACGCAATGCTGCAACATGGATGTTCAATCAGTGCCCCACGCCGCTCACCGTCTGCCGGACGGCTCGCGATGACGCTCGACGAGTCGGTCTATATCCGTCGTCTCACCACCCTCGGTGACACACAGCCGATCGCCGCCAGCGCCGATATCCGCGCGGCCAATGGCAGCAAGTTGCTGGCCCGTGGCGCGCGGATCGATCGCTCGGTGCTGGAGCGATTGCTGCTCCACAAGCTGCTCGAACCGATCGACCGCACCACTCGCCTCGCCGAGCGGGTCGATCGCACCACCTTGCTCGAGACCATCGCGCGCCTGCTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGAATCCCTATAAGGGGTTATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 34710-35742 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFI01000011.1 Marichromatium sp. AB31 NODE_11_length_125666_cov_9.670461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 34710 37 100.0 35 ..................................... GTCAGCACCGGGTAAGCCCGGCCGCCCTCGGCCGT 34782 37 100.0 35 ..................................... TCCTTGTACCGATCCCATGCTAGCCGCTTGGCGAA 34854 37 100.0 33 ..................................... CCCGCAGGGCCTGCGCGATCGATCCGTCTGGCC 34924 37 100.0 33 ..................................... CGGCCGCGCACTCGAGGCACGCGCTCAGGTTGC 34994 37 100.0 36 ..................................... ACTCTCTCATGGCACCGTGCACAGTGCCGGGGTTGT 35067 37 100.0 35 ..................................... CTGTTGCGCTTTTCATTGCGATCTCCTGGTTGTCG 35139 37 100.0 34 ..................................... CTTTTCGACGCGCGCCATCAGGCGCGCCCGCGCT 35210 37 100.0 35 ..................................... CTCGGCGCGAGCGCGCCGCATGAGCGGGATGAATC 35282 37 100.0 33 ..................................... TTCTTGGCTTCCTTGGCCCCCTCGAAGGGGGCC 35352 37 100.0 34 ..................................... GATTTCGCCCGGGGCCAAGGTTGCCGGAACTGCC 35423 37 100.0 33 ..................................... GAGCTCCATGGAGTAGGCGCTCTCAAGGGCTCC 35493 37 100.0 33 ..................................... GTTTGCCATGGTCATAGTCTCCGGTTGGCTGGT 35563 37 100.0 34 ..................................... AGGGTCACCGCCCCAATGCGGACCTCGACCCGAT 35634 36 97.3 36 .......-............................. AGCGGGTCGTGCTCTTCGAGCTGCATGACGACCTCG 35706 37 91.9 0 ................T............G...G... | ========== ====== ====== ====== ===================================== ==================================== ================== 15 37 99.3 34 GTCCGAACCAGAGACCCGATCTAAAGGGGATTAAGAC # Left flank : CAATCTCTCCTGCGACGACTTCGGCACCGGTTACTCGTCGCTGGTGCAGCTCTATCGCATGCCCTTCTGCGAACTCAAGATCGATCGCTCCTTCGTGGTCGACTGCATCGACCAGCCAGAGGCGCGGGTGATCATCCGTGCCAGCATCGAACTCGGCCACAACCTCGGCCTGACCGTCTGCGCCGAGGGCGTGGAGACGCAGGATGTGTTCGATTATCTCCATGCCCAGGGCTGCGACTCCATCCAGGGCTATCACGTCGGCTACCCGGTGCCGGCGACCGACCTGCCCGAGCTGGTCCGCGAGGCCTCGCGCCGACTGCTCGAGATCGAGTCTTGAGTGGGACGGTGGACAGCGGGCATCGGGTCGCTTACCTTGAGTCCCTCGGACCCTTGGCGCAGCCCCCGGAGAGCCACGCGTGCACGTCAACTTTTCGGTTGCCGGAATTTTTGCGAACCACCCTTGCAGGTGCTTGTTTGGAAAGCCTTTCTGGCAACTGGCA # Right flank : CACGACCTGCTCGCGCAGCGCGCGTTGCTCGGTGGTCCAAACCAGAGGTCAGAGATGGCAGGTCTATCCGTGAACACTCCCTGCTTGTGCGCCGCCCCTGGGCGGTTTTTTTCTGTCTGGACGTGATCGAAAGGGGCCGGGAGACGGGTCCGTCTGACTGTCGGCGAGGGTGGGATGGTCAGTCGCTGGCAGGGAAAGCAATGCGCTGACTCAGCTCCTCGACCAGCCGGTCCAGCGCCATCGCGCGTGATCCCTTGACGAGGATGCAGGTCGCTGGATCGGTGTCGGCGAGGATCCGTGCCGCCAGTGCCGGCGGTTGACTGCAATGATGCTCGACCTGGGCTGGTGGTGTGGGTGCGGCGGTGGCGGCGAAGCCGGGGCCGATGAGGATGCAGCGCTCGGCGCTGGCGGCGGCGAGGGCGGCGATCTCGCGATGGGCGGTGGGCGCGTGCGCGCCCAGCTCGTGCATGTCGCCGAGCACGGCGAGGCGTGGGGCGGGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAACCAGAGACCCGATCTAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 4927-4200 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFI01000014.1 Marichromatium sp. AB31 NODE_14_length_88447_cov_9.087908, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================== ================== 4926 37 97.3 36 ........T............................ TCGACTTCCGCCCACTACTCCCAGGCCAAACCTCGC 4853 37 100.0 36 ..................................... CGGATCGGATGATCCGCGACTATCTCACCGCCGATC 4780 37 100.0 38 ..................................... CTATCGGTGCGCCGTCGGCGTGCTCTAGCCGGTAACCC 4705 37 100.0 35 ..................................... CGAAGACCGTCCGTCCAGTCCAACATCGGGGCAAC 4633 37 100.0 35 ..................................... ACATGGGGATTTTCTCAGTCCCCACGCGCCGCCAT 4561 37 100.0 36 ..................................... CTCAAGGATTCCCGGCGCAGGGATATCCTCATCGAG 4488 37 100.0 36 ..................................... GTCTTCTGCGATAAGTTTTACTCGTCGATCCGTCAT 4415 37 100.0 37 ..................................... CCCGTTCACCTCATCCCCTTCGGGTCCTTGGCTGGTG 4341 37 100.0 69 ..................................... TGCCGGCGCCGCTTGTACAACAAGGATTGAAACGCGGGGATCGCTGCCGGGTAGAGATGGGCGAGCACG 4235 36 94.6 0 ..............C....-................. | ========== ====== ====== ====== ===================================== ===================================================================== ================== 10 37 99.2 40 GCCGCAATGCTCAATCCATTACAACAAGGATTGAAAC # Left flank : CCGCCAGGGTGCCCCAGGGGAAGTCACGCCCCAGCACCCGGTAGACGCCGGTCGAGATCCAGAAGCGCGACAACGCCCCGAGCGCGCCGCCCCCGGCGATCGCCACAAGTTGCAACACGGTATCTTCCCGCCAAAAGGGATAAGTCTACTATGGACGTCCGGGCCTTTGCCCGGGCGAACGCCCCGCCCACCCTGGCCACTGCCGCACATCCGAAGCGCACACACAGAGGACACCGATCGCACCGACTTGATATTATCGGGCCACGGCAATACCACTGCCCGCAGCGACCTCGACTCAGACTGCTGAGCAAAAAATATCACCGACCCCCAACGCCACTGACGCAACCTTCTGATAAAAAAGACATAAAATCAAAAGTGTCAATGTCAGACAGCGAGAAAACAGGGCATACATCGGTGCAAGGCATCTATTTTTCGCCACTCAAGAGCCTCGGCAGAAAAGACCAAGCGCTTGTTTCAAAATGCTTTTTAGGGAATTTGCG # Right flank : CTTGGATGCGCTAAACGCTGTTTTGTTGCGATGAGAGGGTGAGGAACGGGCAACTCAACCTGCGAGATGACATAGCGATTTAGGTTGGGTTGCTGTTTTTCAGCAACCCAACATCGGTCGATGACATCAACAGCGATCAGATCGATCTCAATGCATCGAGTCAGCAGTGTTCGAGCAATACGCTGAAATCCCCCGCCAGATAACCCTCACGCACCCTCATGGTCGCATTCAAGGTATCAGCGAGCTGTTGGATCTCGGTGGGTCGGCGGCAATTGTAGATCAGCGAGGTGTCGCGGCCCTTGAGCAGGTTGAACACGAAACCGCGACGGCTGGCGGCGAGACAGTTGCGGATGAAGCTCTGGGTCTCATCCCAGGTGAGGATGTTCATGGCGCCGCTGCAGACGTAGTAATCGGCCTCGGGCAGCGGATCCTGGAGCACGTCGCACCGGCGGATCTCGCAGCCGGTGCGCGCGCGCGCCGTCTCGATCATCGGCGCCATC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGCTCAATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 18602-21042 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFI01000003.1 Marichromatium sp. AB31 NODE_3_length_206087_cov_10.026762, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 18602 37 100.0 36 ..................................... ATGAGTCTGCCGACGGCATCTATCGCCTCGTCGAGC 18675 37 100.0 36 ..................................... CGAATACACTTACCGGGATCTGTCCGACGCCGACCT 18748 37 100.0 36 ..................................... CAGGCTGCGAGCGCGGCGCTGGAGCTGGCAAGCCGG 18821 37 100.0 35 ..................................... CCACGCCGCGGGGGTGGCGAGAGCGGCCATCAGTC 18893 37 100.0 35 ..................................... CCGATCAATCGCACCTGCTGATATTTTGCTATCGG 18965 37 100.0 35 ..................................... CCTTGCTGTGATGCCGGCAGTCCGGCGAAAACCAC 19037 37 100.0 35 ..................................... ATGGCCGCGCCATTTCTCCCAATCGCTACGGAGCG 19109 37 100.0 35 ..................................... CCGGCGCGTCCAATGCACTCGGCTGGATAGTGTGA 19181 37 100.0 35 ..................................... GCAGGACACAGGGAAGCCGCGCAAACGCGATCACA 19253 37 100.0 36 ..................................... ACCTACGCACCTACCCGTTCTGGTAAGGGCGTTGGC 19326 37 100.0 37 ..................................... ATCGCCTCATAGAGCGCCTCGCCATGCGCTAGGTAGC 19400 37 100.0 35 ..................................... ATCGAGACGCAGGACGTCGACCAGCTCACCGAGTC 19472 37 100.0 36 ..................................... CTGCACAAGGGCGAGACGGGCACAGATCAGGAGTGG 19545 37 100.0 37 ..................................... TCTGGCGGATTGGTCGGATCGCGACAGGACATGGGAG 19619 37 97.3 35 ....................................T CCTGACTGCGCTCCCATGCTGCCGCCTCGCGGATC 19691 37 100.0 37 ..................................... CCGTCCACGATCGTCCCATCGGGACAACCGCAAACGC 19765 37 100.0 36 ..................................... ATGAGCGGCGGGACCAGCTTCGAGTACGACAGATTC 19838 37 100.0 35 ..................................... CCGAGCTGGGTGACCGAGCTGTTGAGGTCCTTGTT 19910 37 100.0 36 ..................................... ATAGCCCCCACAAGGGCATGTAGATTTGCCCTGAAA 19983 37 100.0 36 ..................................... TAACCGCCCGCCATCTCGGCGATGGCCGCCACGACA 20056 37 100.0 36 ..................................... AGAACGTGGCCGTGGCGCTGGGCCTCTGGGCTCCCA 20129 37 100.0 37 ..................................... TTGTTGATCGCCACCTGGCCGGTCTGGACGATCTCGG 20203 37 100.0 36 ..................................... ATGCTGATGGGGTCCGCCTCATCGACCAGCATGGGG 20276 37 100.0 36 ..................................... CCCTTACACACACAGCGGTCGACCGCAGGGAGACCG 20349 37 100.0 35 ..................................... AACTCCCCTTTGTTATCGGGGAGTTCGAGAATCGC 20421 37 100.0 36 ..................................... CTCTTGCGCTCCAGATCGTGGAGGGCGTCGACGAAC 20494 37 100.0 35 ..................................... GAAACTCGAGGTGTGTGGCGCGCCGCCCGTGAAGC 20566 37 100.0 37 ..................................... CGTACATCCTTGGCTCGCCTGTTCAAGCACGCCGATG 20640 37 100.0 36 ..................................... CTGTCACGCAGCCGCACTCCGCCCCCGCTCCAGTCG 20713 37 100.0 38 ..................................... GCACACATGCTGCTCACGCGCCCGCTCACCGTGGCGAT 20788 37 100.0 35 ..................................... ATGAGGTACCAGCAGACATAGGCGGCTTTCGCCTG 20860 37 97.3 35 ........T............................ GCGACGATGAACTGTCGATGAAGATCGTGCTGATC 20932 37 97.3 37 ........T............................ ATGACCGAGAGGCTATGGATGGTCGGGGTCGAGACGA 21006 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ====================================== ================== 34 37 99.7 36 GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Left flank : GCTGTGGCTTGCCGACGGCACCATGGCGCCACTGGACTACAAATACACCCCGCGCCGCGAGCAGGTGTTCAAGACCCATGAAACACAGATCCTGCTGTATGCGATGCTGATCACCGAGACGTATGGGTTGCCGGTCGAGCGTGGGTTCGTCGCCTATATTCGCGACGGCAGCCATCTGATCGAAGTGCCCGTGAGCACGGTGAGGATCACGCAGACCCGGCATCTGATTGACGAGATCTTTGATATCATCGAGACAGGCAGACTACCGGCGCGCACCCGCTCGCCCCTGCGTTGTGAAGACTGCTGTTACAAAAATATCTGCGCTTGATCGCCCGTGTATTGCAAGTCTTTGAATGTTTTGATTTTTTGTGAGTTTTTTCGATGCGGGGAGCGCTTTTTTCAGGTGTTTTTCAGCCGATTCCCACTCTGAAACGCACTTTTAGAGCACTTGTTTTTCAGGGTTATGTAACTGAATTTTATGATTTTTTAGAGAATTTGCG # Right flank : TCGGGTGGCATGGTTCCGGACCGGGCGGGCGCTCAACCGCTCGTCTCCCAGATCGGTCGTGATCAACTCGGCGGCGGCCCAAATCATCTCACGCGTTCTGCTCTGCTGATGACTACAAGGCGATCAGGATAGCTGGTGGCGGTAGATAAGTATGTGTAACGAGATGAGTTCAAGAACTAGGCAGTCAAGCGGGTGAAATCGGCTCTCAGCTATTGATCCCCTGTCGAGTTCATGCAACATTGGCAGGCGAGTCAGAATCGCGACCAGACGGGCGCATGAGACCAACACCTTGAGGGACGAAAAAAGGGAACCTCAGGAGGAAATAGGCATGTTCGGGGCAATGCGGGAACTGGCGTTATTGGAACTGAACCGTCGCTGCGGAGAAACCGCGCTTGGCTTGTCTGAGATCCGTGCGCGACATGGCGAGCAACTTGCTCCACTTCTCGTCGAGGCCGCTGAAAAGGTCGCGCGCGTTTATCTGCTACAAGCAGTTCCGGGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 40891-41895 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFI01000015.1 Marichromatium sp. AB31 NODE_15_length_83403_cov_8.822866, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40891 29 100.0 32 ............................. CAGGGTGCTCATGTCGCCACCGTCAGCGCGAC 40952 29 100.0 32 ............................. TCACCCATCAGATCGACGCGCGTGGATACACT 41013 29 100.0 32 ............................. CAATTCATCATCCAACTGCCCATCGGATAGGA 41074 29 100.0 32 ............................. CCGAATCGGATCAGATGCTCGAGGCGGCGGCT 41135 29 100.0 32 ............................. TCCAATGCCCTGATCGAGGCGGCCGCCTATCG 41196 29 100.0 32 ............................. AACGCAGAATACCTCGCCGCGCGAATTCGGCC 41257 29 100.0 32 ............................. TCACCGCAAAACGTGTTCGCCGGCGCGGCGCC 41318 29 100.0 32 ............................. CCGCCGGCGCACCCGAACGCGTCACGTCGAAA 41379 29 100.0 32 ............................. TCGTCCGTGCCACGGGGATACAACAGGTAGAG 41440 29 96.6 32 ............................C CTCGATGGGAGATTGTATGGTCTCGCTCAGTG 41501 29 100.0 32 ............................. GTCTACGTCGCCCAGCGGCTACAGCTCAAGCG 41562 29 100.0 32 ............................. GCGCCCGCCTGCAACGCGCCGCCCTTCCTCTC 41623 29 100.0 32 ............................. CCATCCCCCTGGCGGAGGTGATGGCCCCGATC 41684 29 100.0 32 ............................. AATAAACACACCGCAACCGTGATCGTGGCCAA 41745 29 100.0 32 ............................. GCGAGGAGGCCGAGGAGGGGGCTGGTACTGAG 41806 29 100.0 32 ............................. ATCACGCACGCACACACGCCACGTACGCGCGC 41867 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : AAGCTGATCCCGATGATCGAGGACGTCCTGGCCGCCGGCGAACTCGCGCCACCACCACCGGCGCCGGAAAACATCCCTCCCGCTATCCCCACCCCGGAAGGACTCGGTGATGCTGGTCATCGTCACTGAGAACGTCCCACCCCGGCTGCGCGGACGGCTGGCGGTGTGGCTACTGGAGATCCGCGCCGGCGTCTATATCGGCACCCCCTCCAAGCGACTGCGCGAGTTCATCTGGGAGCAGCTCCTCTCCGGCGTCGAAGACGGCAACGCGGTCATGGCCTGGAGCACCAACACCGAGTCCGGCTACGACTTCCGCACCATCGGCGAGAACCGGCGCATCCCCGTCGATTTCGACGGACTCAGACTCGTCAGCTTCCTCCCCCCACCCCCATCGGACCCTTCACGATGATCGAAAAACCAACCCCTTCGATAGACCCCGAAAATCTGGTAGATTTAGAGGCGCGTATTTTTCTTCGCTGAATCATGCAAATACGCGAAGA # Right flank : GAACATCCTCCCCTACTTGACCCAGCTCACCACATCACCGCACCACCCGCCAGCGCCGCCACCACCGGTCGCCCCACTCGAACAGGGCGAGGCCGGCGAGGATGGTGAGGCTGCCGAGCCAGATCCTCGGGGTCAGCAGCTCGTCGTTGACGAGGTGGCCGAGGAGCAGGGCGAGCACCGGGGTGATGAGCGGGATCAGCGCCACCCGGCTCGCCTGCATGTGGTGGAGCACGAAGTAGTAGAGGATGAAGCCCAGGGTCGAGCCGAACACCGCCAGGTAGAGGATCGACCAGAGCGCGCGCGGCGGCAGCGTCTCCGGCGGCGCAAAGCCCTCGCTCAGCCCCCAGCTCAGCAGGAACAGCGGCACCGCGATCAGCAGCGCGCCGGTGGTGGTCTCGACCGGGTGCAGGCGCGCGCCGATGCGCTTGATCCAGACCGCGCTGGCCGAGTGGATCACCACCGTCACCAGCACCCCGGCCATGCCCAGCAGCGCCGGACCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //