Array 1 33349-30070 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZMI01000026.1 Helicobacter cinaedi isolate 213_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 33348 36 100.0 30 .................................... GAAAATTTTTCTTATAAAGAGTATATTTCC 33282 36 100.0 30 .................................... TATGCTGGTGGACTTGATACAACTACGTCT 33216 36 100.0 30 .................................... CCTCTGCTGTTATAGACGCCGGTAACATTC 33150 36 100.0 30 .................................... AACTTTGAGCTTGTCCCTGAGTCAAAAGTT 33084 36 100.0 30 .................................... ATAAGTGTAGCCACATCTTATTCTTTCTAT 33018 36 100.0 30 .................................... GGCGTGTAGAAAGGTAACTTTTCAGTGATT 32952 36 100.0 30 .................................... CTCGTTTGGTTCTGGGTCTCTCTTTTCTCT 32886 36 100.0 30 .................................... TTCTGCTATCTGACACCATAGCGGTCAGTA 32820 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 32754 36 100.0 30 .................................... ATCGCCACGCTGTAATCGTTATCTGCCCCT 32688 36 100.0 30 .................................... GCAGAAAACGTCGATTTTTTATTCGCAGAC 32622 36 100.0 30 .................................... CTTGGACACTCACATGCATACATCATATTT 32556 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 32490 36 100.0 30 .................................... TCAAATTCAAGGCATATTGTGCCGGTAGCA 32424 36 100.0 30 .................................... ATATTTCCTTTTATGCTTGTGTATTCAATA 32358 36 100.0 30 .................................... CGGAGCTCAGTGGTATCGGTATGCAGGAAG 32292 36 100.0 31 .................................... ACCTTTTGCTCCCATATATCCGAGAACACCA 32225 36 100.0 30 .................................... CAGGCATTTGATGTTTCCGTTTTCTCGTTG 32159 36 100.0 30 .................................... TGATAGCACACTAGATTCTGCTAAGTGCTA 32093 36 100.0 30 .................................... GGTATGGATTCTATAATGACGACTTATTAT 32027 36 100.0 30 .................................... TAGTCAAACATGTCAAGCCCCCTCTTTTGC 31961 36 100.0 30 .................................... CCCGGAGCTTAGCGGAATCGGAATGCAAGA 31895 36 100.0 30 .................................... GATTGCTCGTGCGACACTGCATAATTTTAG 31829 36 100.0 30 .................................... TCCCCAGCGATGTTCTTCCATATCTTTCTC 31763 36 100.0 30 .................................... GTCTGCCGCGAAAATATGCAAGGAAGCGAG 31697 36 100.0 30 .................................... CCATTGCTTCTATTATCATATATGCCTTGT 31631 36 100.0 30 .................................... CCGGCAAGGTTGAAAACAATGCTGGAGGCA G [31618] 31564 36 100.0 30 .................................... GTCCGCATTGCTTTTCTTTTGAAATAAGTG 31498 36 100.0 31 .................................... CCGTTGCTAGAGCTTCCACGCAGCGTGGCAG 31431 36 100.0 30 .................................... AGTTTCATTTTGCGGATTTACCTTATAAAA 31365 36 100.0 30 .................................... ACCCCTATTTCACACATCTCGGCGTTTCTC 31299 36 100.0 30 .................................... TCATTTGCCCTAATTAATTCTACGCTGTCG 31233 36 100.0 31 .................................... CCGTTGCTAGAGCTTCCACGCAGCGTGGCAG 31166 36 100.0 30 .................................... TTCAAAAAATGAAAGAGGTTGCCACCTCTT 31100 36 100.0 30 .................................... GAGCAAAAGACGCTAACAAGTCTAGCGAGG 31034 36 100.0 31 .................................... CCAAAAGATTTAAAACACGCGACCCGATAAG 30967 36 100.0 30 .................................... TTGATGTCGGTGCTTCCTTATAATATGTAT 30901 36 100.0 30 .................................... TGCTACTGCTTTGCAAAGAATGCAAGAAGC 30835 36 100.0 30 .................................... CATTCGGAAACCGACACGTCGACTGCCGCG 30769 36 100.0 30 .................................... CAGCTCGGTTTTAATGCGATTGCTCCAATA 30703 36 100.0 30 .................................... CTAAAAATAGTGAACAGCAGAGACAGTATT 30637 36 100.0 30 .................................... GGTCTCGGCCAAGCGCTAGAATCTCAAATG 30571 36 100.0 30 .................................... ATCTCTAAAATCTCTAAAACAATCGCAAGG 30505 36 100.0 31 .................................... AAAAGGATAGAGTTTCTCTACAAGGATATGG 30438 36 100.0 31 .................................... GCGGTGATAATTTTGGCGGTTCTCAAGCTTC 30371 36 100.0 30 .................................... TTGGAGCTATCATCATACAAAGTTTGTTGA 30305 36 100.0 30 .................................... CCAGCGCCATCAATCATAAATATCGTATTC 30239 36 100.0 31 .................................... ACATTTGAATAATCTGCGTTCGTGTGTGTTA 30172 36 100.0 31 .................................... CCGATATTTCTTTCAGTTCTGTCACATTCCA 30105 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 50 36 99.9 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : TACAAGATTTCGAAATGAACTCATCAAGCTTGGCTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGCTGTAAAAAAGGTGCTTCCAACTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAAAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTGCAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 48539-48306 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZMI01000007.1 Helicobacter cinaedi isolate 213_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48538 36 100.0 30 .................................... ACTTGCGGACGAGATTTCATAGAATCTTTG 48472 36 100.0 30 .................................... TTTTAAAATTTTAAGCCCTTGAGATACGCG 48406 36 100.0 30 .................................... AGCTCCTCTTTTGAAGCATTCTCATTTTTA 48340 34 86.1 0 ....................A--.........T.T. | T [48311] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : GTGAGGGGATTGCAACAAAATGTGAAGTGTGTGGGAATAATATTA # Right flank : ACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAACACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCTA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //