Array 1 252729-253550 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJQFR020000001.1 Salmonella enterica subsp. enterica serovar London strain PS121 isolate PS121, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
252729 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
252790 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA
252851 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
252912 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
252973 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
253035 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA
253096 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG
253157 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
253218 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA
253279 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
253340 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA
253401 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
253462 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT
253523 28 82.8 0 ...............A.AA....-.G... |
========== ====== ====== ====== ============================= ================================= ==================
14 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG
# Questionable array : NO Score: 6.11
# Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 269683-271531 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJQFR020000001.1 Salmonella enterica subsp. enterica serovar London strain PS121 isolate PS121, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ========================================================================== ==================
269683 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA
269744 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG
269805 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
269866 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC
269927 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG
269988 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
270050 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT
270111 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA
270178 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG
270239 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
270300 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA
270361 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC
270422 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC
270483 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
270544 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG
270605 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG
270666 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC
270727 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
270788 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
270850 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC
270953 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
271014 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA
271075 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA
271136 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA
271197 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT
271258 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC
271319 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
271380 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
271441 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
271502 29 96.6 0 A............................ | A [271528]
========== ====== ====== ====== ============================= ========================================================================== ==================
30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGCCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.14
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//