Array 1 60-1608 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVIA01000026.1 Hungatella hathewayi strain AF19-21 AF19-21.Scaf26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 60 32 100.0 33 ................................ ATACACCATGTCTAATTTTTGATGCTTTGTTTT 125 32 100.0 33 ................................ ACATGAATCATTAAAAGGGGGGCGGATCGAAAT 190 32 100.0 34 ................................ ATCGTTAGCTTTTGTTTTTCATCGCAAACGATCA 256 32 100.0 35 ................................ CTCTTGCGATAGTAACGTGGATTGACTGGAATTTA 323 32 100.0 34 ................................ CTTTATAGTTTGTGGATTCTCTTCTGATTACTTT 389 32 100.0 34 ................................ AGAATTACAAGGGTAATCTCTTAAGTCCGGAAAA 455 32 100.0 34 ................................ GATTTTGCACCAGGAGACAGACAAGAAGGTTATT 521 32 100.0 35 ................................ CTGGCAACAGTAGAGGCAAAATTGTATCGAGATGA 588 32 100.0 35 ................................ AGATTGTCACATGTGACACATTATTTAGGTACTAT 655 32 100.0 34 ................................ CGACAGAAGTTGATTTTGAGCTGACAGGAAACAC 721 32 100.0 35 ................................ CCATTTGGCATCTACATGTCAATGCCTCGTACGGA 788 32 100.0 34 ................................ ATCGATCGACATTGTAAACACAGGCTTGGATGCG 854 32 100.0 34 ................................ CTCCTATATAATAGTATCAAATAGTATCAATCAG 920 32 100.0 34 ................................ TAATTCCTCCATAAGCTCATCCATCTTAACAGCA 986 32 100.0 33 ................................ CTAATTCATCGACGCAAAATGGTTCTCTGCGCC 1051 32 100.0 34 ................................ TGCACAAAAATGAAAGAGTTTTGACGGCAGAAGA 1117 32 100.0 33 ................................ CGTATTGCAATCCGTGATCGTATATATTACGTC 1182 32 100.0 34 ................................ ACCCATTACTCCAATTACTTTCGCCATCTTTTTC 1248 32 100.0 33 ................................ GGTGACGGTCTGCAAGAGACAGGCTGTCTTTTT 1313 32 100.0 35 ................................ TTCTTTACTTTTTGAGAAAAGTGTACTTCCGTAGA 1380 32 100.0 35 ................................ ACACGATGAATTATCAAAAATTTTATCCTACAACT 1447 32 100.0 33 ................................ CCCCGGGCACCCCTTCTTTGCCATATTGCTCGC 1512 32 96.9 33 ........................G....... CCCACAGAAGTTACGACCGAATGGAAAAGATAC 1577 32 71.9 0 ...........TA.CA..AC...A.AC..... | ========== ====== ====== ====== ================================ =================================== ================== 24 32 98.7 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : TGCGTGGGAGTGTGGATTGAAATAGAATTACAAGGGTAATCTCTTAAGTCCGGGAAATAG # Right flank : TTTTTAATGTATATAATGGAGTTGAATGAAGCAGGACTATATTAGAAGTATTTTATTTAATTAGGGCAGTTCTAACAAAAAGAACCGTTTTTTCACTTATGTTCTAATTTGATTAGCGATATTATATATAGCTCAATAGACCCGGACATAATGTGTAATAGCAGAGAAATTGACTATCGGATTGAAGATTATATGAGTAAAGCATTTGAGTGTAATATGCTTACGTTAGAGCATCAGAGTTTTGTTTATAAAACTATTTGAAAAACAAACAAGAATAGTTTACGTAAACGTTCAATAGTGAATGCGTCCAATAAAGAAACTGCTCATAAGGATGGCATACACCCAATGTGTTATTAAAAGCAGATGATGCGTCAATAATTGTCAGGCATCATTTTGTTTAAATGAAAATAAATTAAGCAGGAGGACCACTTTGAAAGAAAGATTAAAACAAGTAATGTCAGCAGAGGCGCATGTCATACAAAAGATGTCGGAGGAGATTG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 1 1046-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVIA01000006.1 Hungatella hathewayi strain AF19-21 AF19-21.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1045 32 100.0 33 ................................ CACTTGCTCCGGGAAAAGATTGGACAACCACGG 980 32 100.0 33 ................................ TGTGGTCAAGATAGTATACAGATATCTTGGATC 915 32 100.0 35 ................................ TAATAATTCGTCAAAGCTCTGGACTTCTCCGTCCC 848 32 100.0 35 ................................ CGATTCTGCGTGCGCTTTTGAATTGGCATAACTGT 781 32 100.0 34 ................................ TTCCTTGCCATTTTTGTCAGCCCCCGATCCATGG 715 32 100.0 34 ................................ TGGAATATGGAGAAACTGTTGAAGAAATTTTTGT 649 32 100.0 33 ................................ TTTAGTCGTAAAGGCTTCTTTAAATTCTGCAAG 584 32 100.0 34 ................................ AGTCAGAAACTAACCATTACTGCCCAGATGAGAT 518 32 100.0 35 ................................ AATTGATTATCAGGTTAAAATAAATCAAGATATAC 451 32 100.0 33 ................................ ATTTTGGGTAAAAACTTTGTTGCCCCAAGCGTC 386 32 100.0 36 ................................ AAAATTGTCTACTAACTGCTGGATAACTAATGTGTT 318 32 100.0 36 ................................ CATAAAGACGAGGCCGAAAGTATGCGAAAGACAATC 250 32 100.0 33 ................................ CTCTTGCGATAGTAACGTGGATTGACTGGAATT 185 32 100.0 33 ................................ AATTGATTATCAGGTTAAAATAAATCAAGATAT 120 32 100.0 35 ................................ CACTTGCTCCGGGAAAAGATTGGACAACCACGGAG 53 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 100.0 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : TCGTCACTCTATGGCAGGTGGCGTTTTTTCGTCAAGCAGTGGTTCCCTATATTGACTGATTACAGCTTGATATAGGGGCTTTTTTAAATTATTATCTGTTTTATTATTGATGAACAGAAACAGATGGACGGAGCTGTGTGTAAAATATAGGTACTTATAGGTGTATTTTTCACCGCAACGGCTACGGAGCTGAAGGCTCTGTCATAAAGTCTGTATTTATTTTTCGTATCCTGTAACATTATCTTATTATGTCAAGGCACTGATGTTTACCTACTTACGATGCGAGTAAAATGGTAAGAATATTATACGAATTATAAGGTGCGAATGCTAAGTGGACATAAATTTCCTGGGAGATTCGCACCAAATAAACGTGTAAATTGTAATATAAAATACAAAAGAAGTGGGGATTTGTGCGAAAAGAATTGTAATATCTAAGAGAATGGTATAAAATTTTAGGAGAAAAGCATAATTCTCTTGTGTGTAAATTGTGTGATTTTGCC # Right flank : TTGTCATATTGTAATAATTGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 2 6811-2894 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVIA01000006.1 Hungatella hathewayi strain AF19-21 AF19-21.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6810 32 100.0 33 ................................ AATCCACGCTCCCACGCGTCGCTCCTTGCGTGG 6745 32 100.0 33 ................................ ATTGCGATAAATTGGTAACCATAATTTATCGCT 6680 32 100.0 34 ................................ TTGTAAACATTTTGCTTACCTCCTTTTTTAATTT 6614 32 100.0 33 ................................ CAATATAATCCCTCTGGATTATAGATTTCTGTC 6549 32 100.0 32 ................................ CATTTGAGCGTGATGCCGTTTATTCCGTTAGC 6485 32 100.0 33 ................................ ACCCTCATAACTTAAAATTTTGTCAACTAATTG 6420 32 100.0 35 ................................ TGGTAATTCATGGTGTGAAAAGCCGCCTGTACATC 6353 32 100.0 33 ................................ TCCGTCCCACTCATCCAACAGGGCTTTTACAGT 6288 32 100.0 36 ................................ TGAATACTCTAACGTGTGGGAATACGTGCATAAATC 6220 32 100.0 34 ................................ TTATTAAAATACCATTTTCTACCCTCTCTAGTTT 6154 32 100.0 33 ................................ TATATACATTATAACACAAAACGATAAAAAATG 6089 32 100.0 35 ................................ TATAAAAGTTTCGTTGTCATTAAGATAAACATTTT 6022 32 100.0 33 ................................ TTATTTCCAATAACTTATGCCCCTTTTTGATCT 5957 32 100.0 34 ................................ TGCCGCCTGCGCGGCAACCTTGTTAGCCTGCATC 5891 32 100.0 35 ................................ CTGCTGTACGATTACCCACACAGAGATATATCTCT 5824 32 100.0 34 ................................ ACATGAATCATTAAAAGGGGGGCGGATCGAAATC 5758 32 100.0 34 ................................ CGCATATACTTTTTGACGCTCGTAGTACCCTACG 5692 32 100.0 33 ................................ TCTGGGAGTGTAAATGTTTACATCATCACGCTC 5627 32 100.0 33 ................................ TTGTAAACATTTTGCTTACCTCCTTTTTTTAAT 5562 32 100.0 34 ................................ CGCATATTCTTTTTGACGCTCGTAGTACCCTACG 5496 32 96.9 34 ...C............................ CGCATATTCTTTTTGACGCTCGTAGTACCCTACG 5430 32 96.9 34 ...C............................ CGCATATTCTTTTTGACGCTCGTAGTACCCTACG 5364 32 96.9 34 ...C............................ CGCATATTCTTTTTGACGCTCGTAGTACCCTACG 5298 32 96.9 33 ...C............................ TTGTAAACATTTTGCTTACCTCCTTTTTTTAAT 5233 32 100.0 33 ................................ TCGTTGGACTTATACAAGTTACTTTTGCGTATA 5168 32 100.0 33 ................................ AATTGATTATCAGGTTAAAATAAATCAAGATAT 5103 32 100.0 34 ................................ TTTATTCTCACTTTAATTATAACACAAAACAAAT 5037 32 100.0 33 ................................ ACATGAATCATTAAAAGGGGGGCGGATCGAAAT 4972 32 100.0 34 ................................ GTTTGTGAATTTATATCCTTCTCGTAATAAAAAA 4906 32 100.0 34 ................................ GCACAGTCATTGGCATATTTGATGAATATATTAA 4840 32 100.0 35 ................................ CACGTGATCAAAATACGGATTGTGATACCACCAGT 4773 32 100.0 33 ................................ CTCGATTATTTGATGTGCATAAACGGGATTAAC 4708 32 100.0 34 ................................ ATTGTAAACTTCTACTACCGCCACATAGTCAATG 4642 32 100.0 33 ................................ GCAACATTTTATGTATACCCATTGACTTATAAT 4577 32 100.0 34 ................................ AATTGTTAAATCAACTTCTGTGTGTATAGTTTGT 4511 32 100.0 33 ................................ TTCGTAGGTTCTGTAAAGAGTTTCGGAGCCAGA 4446 32 100.0 35 ................................ ACAAACTGTAACCGTCCATCCTCGTCATAAAACGG 4379 32 100.0 34 ................................ CTCAATAATCAGCATATCAATGTTAAGAAAACTT 4313 32 100.0 34 ................................ CGCATATTCTGGGCGTATGGTTTTCCATTTTAAT 4247 32 100.0 33 ................................ GGCAATTACGTCTTACGCGATGAATTTTACAAT 4182 32 100.0 36 ................................ TGTCGGAACGTACTTATCTGCACCACCTGCTACCTC 4114 32 100.0 36 ................................ CAGAGTGGGTGCTATGTTTTTTGACGAGTATCAGGA 4046 32 100.0 33 ................................ ATGCTGCAGTTGATCAACTAAATACGGTGCATC 3981 32 100.0 34 ................................ ATTTTTATTTGTTTTGTGTTATAATTAAAGTGAG 3915 32 100.0 36 ................................ ACACTATGAATTACCAGAAATATTATCCGACAACTG 3847 32 100.0 33 ................................ ATACTCAAGTATGGCTAAGCCGGCAAAATCTGC 3782 32 100.0 33 ................................ TGTGCAATCTTTATCTTCTGGCTCCTCGCCATG 3717 32 100.0 34 ................................ TCCTTTAGTGTACGGCAGGTAGCTATATACACAT 3651 32 100.0 34 ................................ AGTATTGTGTCTGCAAGGATAAGCAGTAACCATA 3585 32 100.0 34 ................................ AATTTGGAAAGGAGAGTGAAAAAATGTGGCTACC 3519 32 100.0 35 ................................ TTTGCTGGTTTGAAGCACATCTGCCAGCTTTGACA 3452 32 100.0 34 ................................ AGTACGAATATGAGGTTCTTGACCTCCTCTACAT 3386 32 100.0 34 ................................ CGAAATATGCTATATCCGCTTCGGACAGTTTATC 3320 32 100.0 33 ................................ AGGAAAATTTGCAGAAGCAGGATATTCTGCGAA 3255 32 100.0 35 ................................ TCCAAGGTGCAGCGGCTTAAGGATGAAACATTTTC 3188 32 100.0 36 ................................ TTCTGACTGTCGATATACTCCTGAATGAAGTCCAGG 3120 32 100.0 33 ................................ GGCTATTCCATGACACTCTGCTTTAGTTAAACC 3055 32 100.0 33 ................................ CGTACAAAAGTCTGGGATGGAACATATAACCCG 2990 32 100.0 33 ................................ GATTTTAAATGGATCTGTCATAAGTGCCCTACG 2925 32 90.6 0 ..........................A.CC.. | ========== ====== ====== ====== ================================ ==================================== ================== 60 32 99.6 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : TTTATTGCACAGACTGTAATGAAACATGATGGTTTCAGACATTCAGTATCCACTTCGTTTCATGCTATCCGTGCGCTAATGGCGTACGGCACTATCCATCATAGATGAATTTCAATGAGCTGGATACGTAACAGTTATGCCTAAACTATTACCTTACGATAACAGTATAATAATATTACGGTAGGAGCATGTAGTTCATTTAGGGACTGCACCATGGAGACCTTGGGGAATATAATTATCAGTAAACTGTCAAAATATAGAAAATATTAAAAGAAAATTGCTGATGGGAATGTTCTGATAGTATTTATGGTGTTTTAGGTGCGAATGTGAAGTGAACATAAATTCCCCGGGAGATTCGCACCATATAAATCTATAAAATGTTATATTGAGACGAGAAAAAAAGCGAGTTTGAGCTAAAACAGTTGTAATTTCTAGGAAAATGCTATAGAATTTTAGGAGAAATGTATAATTATCATGTGTAAAAATTGTGCAATTCTGCT # Right flank : ATAGAATCCACACTGATAAACAAAATAAGGTAGACTGTCCGAAAGCGCTAGTAGCCAGGAAAACCATTAGCTGTAAGGCGGATTTACCATAAGAGGGGGATTAGCTTTGCTTGAATTTTAGATTGATTTATGAGGTTTTGTTTCAGATTGTGTGTGGATCATATTCATCAACATGAACGTCGCAGTTTTTGGGGCAGTACAGCAGATAGTATTGTCCATAGAGCTTGCGACATAATAGAGAACTACGGCTTTTTTAAGTGTATCCCCTTATGAGTGGTTGAGCTCATTGGATGTCTTTTCATCACGGTGCCTTCATTCATCATGATTATAGCGATATATGGCAGTTTTTTGAGCTACCTTACTGAAATTGCTGCGATCTGCTTTTGCAGGAGAGCAGAGCCAGAGTGTTGGAAAGCGTTTTAACAAGAATTATTTATTGTCTATCGGAGGGGGCTATTATTGTGCTTGTCTGTATTATCTTTTCTGTGTTTGCGGCTTAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 3 19393-17044 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVIA01000006.1 Hungatella hathewayi strain AF19-21 AF19-21.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 19392 33 100.0 32 ................................. TCTGCATTATCAGTTCCAAAAACCATTGCGTT 19327 33 100.0 32 ................................. GTTCTGGGAAAGGCACTGCAATTGAATCTACA 19262 33 100.0 33 ................................. CACCATGAATTATCAGAAATATTATCCGACATC 19196 33 97.0 32 ................................C AATCTTTTTCCTCTTCTCTGGGAGTGTAAATG 19131 33 97.0 35 ................................T GCATATACTTTTTGACGCTCGTAGTACCCTACGTT 19063 33 97.0 32 ................................T GCCGACATTTTAAATGTAACTCGTAGTGAGAT 18998 33 100.0 35 ................................. TTGCGATAAATTGGTAACCATAATTTATCGCTAGC 18930 33 97.0 33 ................................T TGATATAATACATGCGTGATAAAATTGAGAATC 18864 33 100.0 35 ................................. AAAAATAAAGGGCGTATGTCACGGAAAAACATATC 18796 33 97.0 32 ................................C ACTTGCTCCGGGAAAAGATTGGACAACCACGG 18731 33 97.0 33 ................................T ACATCAAAAATTGCCGATAATTCTGTGGTCAAG 18665 33 97.0 31 ................................G TTGTCATTAAGATAAACATTTTGAGAAGCAT 18601 33 97.0 35 ................................C GCATATACTTTTTGACGCTCGTAGTACCCTACGTT 18533 33 97.0 34 ................................C CTCCTTACTTGCCAATCAAAAGCATCCCGTGAGT 18466 33 97.0 35 ................................C ATTTGAGCGTGATGCCGTTTATTCCGTTAGCGATG 18398 33 97.0 33 ................................C CCAGAGCGAAGACGGGCAGTAGAAAAGACATTT 18332 33 97.0 32 ................................G TCACGCTGTGTCAGTTCATCCAACTGCTCAGC 18267 33 97.0 32 ................................T CCTTATTTTGGGCTGTTTCCAGCCCTCTATAA 18202 33 97.0 32 ................................T GCCAATTAAGTCCGTAATACCCTGCCACGATA 18137 33 97.0 36 ................................T GCAATGGTTGATACTGCATAATAATATCACCAATAC 18068 33 97.0 34 ................................T ACATCAAAAATTGCCGATAATTCTGTGGTCAAGA 18001 33 100.0 33 ................................. ATTGCAGTGCCTTTCCCAAAACTGAAAAGTTGT 17935 33 100.0 32 ................................. TTTTGGGTAAAAACTTTGTTGCCCCAAGCGTC 17870 33 97.0 33 ................................T ACATCAAAAATTGCCGATAATTCTGTGGTCAAG 17804 33 100.0 33 ................................. CCCGAAAACATCTTGGGTTTTCCAACAGGATAC 17738 33 100.0 34 ................................. GATTGTCACATGTGACACATTATTTAGGCACTAT 17671 33 97.0 32 ................................T ATATAGCTGTACGGGTAGCTATATAATTTGGA 17606 33 100.0 33 ................................. TGTAGTCATCCACCTTGAGTACAGGGATGTATT 17540 33 97.0 34 ................................T GTAATCACAACACATCTACTCGATGGTTTTACGC 17473 33 100.0 33 ................................. TGGTATAAGGAAAAAGTTGATGTCTGGTGGGCT 17407 33 97.0 34 ................................C GCTGTCGATTTAGTTTAAAACCAAGATGCCTACC 17340 33 100.0 34 ................................. ATCTGAAACAAGCCATTACTGTCCGGATGAGATT 17273 33 97.0 34 ................................C TGCGAATCTGCAGACATTGGTATCCGCGCCCCCA 17206 33 100.0 34 ................................. CAAATTAGTATTTGAATAATTTTGTATACATATC 17139 33 93.9 32 ...................T...........C. TATATAGTGATGATGCCTCCTTTGGTTATATG 17074 31 81.8 0 ...........--.A.T..T.C........... | ========== ====== ====== ====== ================================= ==================================== ================== 36 33 97.6 33 GTCGCTCCTTGCGTGGGAGCGTGGATTGAAATA # Left flank : CACAAGAGAGGTTAAGCTATTTCTGAATGTCACCAAGCGTCTATTATTTAAGTGGCTGAATCGTAGAAGTCAGAAAAAGAGCTATACATGGGAAACATTCAATAATGGAGTGCTCAGAACATTTCCGCTACTAGAACCCAGTATCAAGGTTAGCCTGTTTTACAGGTAGGTATGAATATAAAGTGAAAAGCCGTATGCGTTAATAGCGCACGTACGGTTTTGTGTAGGGGTATGGGGAGTAATCCCCATATCTACTAGAGAGTAATGCAGAGTGATATCAGGTTGGGATAACCTTATGGTAAATTCCGGATATGGCCAGGTGCGAATGTAAAGTGAACATAAATTCCCGGGGAGATTCGCACCAGATAAAAGGGGGAAATTTGATAAAGTGACGAGAAAAAAAGATGATTTGATCGGAAAGAATTGTAATTTTTAGGCGTATGGTATAAAATTTAGAAGTAAAGCATAATTTTCGTGTATGAAAACTGTGCAATTTTGCT # Right flank : TCCAAGTGTTCATCTACCTGTGCTGACAGTGATGGTCACTTCCTACACAGCTACAAGGTACAAGATGTCGATATGAGGGCATAAGTTGAGCAAGGCTAAGAAAAGGCGATCTCCTTTACAGTACTATCATTGGATTTGTTATGTTTACTATGTTAGAAAAAAAGGAGGAACTTAATGAGATATTTAGCCCATATTGAAGAAGATTCAGGAGAACAAACGTTAAAGGAGCATTTGATAAATGTAGCCGATTTATCAGCAGAATTTGCAAAGTCCTTTGGCTGCTATGATTGGGGCTATTGTTGTGGTATGCTGCATGATATTGGAAAATATTCCGAGGAATTTCAGCAACGCCTGGCAGGCAGCAATATACGTGTTGACCATTCTACCGCTGGGGCAAAATTATGCTATGAAATAGGCGGCATGTATGGCTTTCTTAGTTACTGTATAGCTGGGCATCATACAGGCTTGCCAGATACGGGAGAGGACTCGAATACAAGTAC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTGCGTGGGAGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 201655-200347 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVIA01000007.1 Hungatella hathewayi strain AF19-21 AF19-21.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 201654 33 100.0 33 ................................. GTTGTCATTAAGATAAACATTTTGAGAAGCATA 201588 33 100.0 34 ................................. CTCCATATTCCAGAAGACCTTTTTTAAATCCAGA 201521 33 100.0 33 ................................. TTGCGTTTAAACCGATTTGGCGTGACATAGAAA 201455 33 100.0 34 ................................. AGATTGTCACATGTGACACATTATTTAGGTACTA 201388 33 100.0 34 ................................. TCCACCAATCGTACACTGTAAAAATAAATCGCCA 201321 33 100.0 33 ................................. ATATACCATGTCTAATTTTTGATGCTTTGTTTT 201255 33 100.0 33 ................................. TTCCTGCCCGTAAGTTGTCCTTACGTAACTAAT 201189 33 100.0 34 ................................. CTGCGTAGGTATTGGAAATCATTATACTCTCGGT 201122 33 100.0 34 ................................. CCTCTATAGTCCCTGTAAATTGTGTTACGCTCCC 201055 33 100.0 36 ................................. GAGACAGCAAAAGTGATCAGAACTGAAGAAGTTAAC 200986 33 100.0 35 ................................. TGCTGTTGGGACAACGAATTAAAGTTTAACGTAGG 200918 33 100.0 35 ................................. ATTTTGTGTAAAAGTTTTGTTGCCCCAAGCGTCTC 200850 33 100.0 34 ................................. TTTGTGTCATATTCCCATACCGTCATAGGATAGA 200783 33 100.0 35 ................................. ATCCATGTTAACAGTTCCGAAAACCATTGCGTTGT 200715 33 100.0 34 ................................. CTGCTTAAATTTATCTGGCACCCGTGCCAGCGTT 200648 33 100.0 34 ................................. CGCTTGTGAGAATTATTTTTACAACCACTGGATC 200581 33 100.0 34 ................................. CGTATCAATGATATCGCTGTCAGCAGTTTCAGAA 200514 33 100.0 34 ................................. TCCAACATTTTTGTACGACCATATGATTTTTGCG 200447 33 93.9 35 ......................C....T..... AATCATGTAGATTAAAGTCAGATTGGGGTCCTCTA 200379 33 93.9 0 ......A.........................A | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 99.4 34 GTCACCGCTTGCGTATGCGGTGTGGATCGAAAT # Left flank : TATATATGGGAATAAAATATATTCATGACAAATGTCATGTGGTTTTATGGTATAGAAACCTCTTTTGAAATTTCCAATATCATAAAAATTAGCGGGGGATGCAAACGCCGTGATAAGGTATTGAAGTATTGTTAGAAGTTTTCAGTTTTTTACATGGAAGTTTGCCGTACTTATTGATATAGTAGATATGGTGTAGCAGCTGTTTGAAGAAGCAGGAAAAACAAGGATAGATGAAGCTGTAAAATGCATGGTGGAAATATATGGATTAGGGGCTAAAACAGCATTGGGGTATGGCGTTGTAGAAATGCAGTAAGTGTTAAAATAATAAAGTGCGAATCAGTAGCGGACAGGAATTTCCCGGGAGATTCGCACCTTAAAAATAAGGAGCGGAAGGGGATACAGATGGAAAAAATACAAATTTAATGAGATGAATCAATTGATTTTGTGGTAAATGTATATTATTATGATCTTGAAGTAAAGCAAATTTATTTAGTTTTGCT # Right flank : AAATAAGATTACCAGCTAACCCACCGGGAAAAGCCATAGTCACCATCCAAGTACCTCGAATAATAATTAATTTGCTTTTAAGCTGAGATAAATTTTCGATGTACTAAGTATGGTTTAAAATCTTCTTGATATATCCTCTGCATCTATTCTTTTGTCGTAAGTTAAATGAGACGCCACAGTAAAAAATATTACATGCTATTTTTAACATGTTATAGGCAAGAATTCCCCTTCCTCTTTAGGTGGAGGATGAATTGCAATTAGCCTATCGGCGAAAATAGCTATATACCATATCTGGTACAGAAGATTTTTTCTGAAATCTAATATCAAATTCTTTGATAAAATTCTTTTCTAAACTATGGACGAACACTCGTTCTGTTATGGCAAGCATGATATAATGTAACCAGTCGATAAATTGAAGGAGTGGTGAATGTAACGGAATTAGACCGTAATGCACATTCAGCATATTTGCTCTGTTACCATCTGATTATGGTAGTAAAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCGCTTGCGTATGCGGTGTGGATCGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACCGCTTGCGTATGCGGTGTGGATCGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //