Array 1 133307-132486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBAB010000011.1 Klebsiella pneumoniae strain DGL13 NODE_11_length_197140_cov_47.127635, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 133306 29 93.1 32 ............TG............... AGCAACGTTTCCGGATTATATGGCTGGAACGT 133245 29 93.1 32 ............TG............... TGGTGTTGTCCACGGTTACCCGCTGGCTGGAA 133184 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 133123 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 133062 29 96.6 32 ............................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 133001 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 132940 29 96.6 32 .........................A... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 132879 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 132818 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 132757 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 132696 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 132635 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 132574 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 132513 28 93.1 0 .......................-....A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.3 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65050-62888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBAB010000004.1 Klebsiella pneumoniae strain DGL13 NODE_4_length_313994_cov_30.988856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65049 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 64988 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 64927 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 64866 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 64804 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 64743 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 64682 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 64621 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 64560 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 64499 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 64438 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 64377 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 64316 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 64255 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 64194 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 64133 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 64072 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 64011 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 63950 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 63889 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 63828 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 63767 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 63706 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 63645 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 63584 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 63523 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 63462 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 63401 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 63340 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 63279 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 63218 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 63157 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 63096 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 63035 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 62974 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 62916 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //