Array 1 66294-67583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVR010000016.1 Listeria seeligeri strain FSL L7-0916 NODE_16_length_72878_cov_30.414019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66294 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 66360 36 100.0 30 .................................... CAAACTTTTTTATTTCTTTTTCTGTGAATC 66426 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 66492 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 66558 36 100.0 30 .................................... ACGGACGGTGTAGGTTTTGTCAGTGATACC 66624 36 100.0 30 .................................... TGTCCTTGTTTAATCCCGGTTCTAACATGA 66690 36 100.0 30 .................................... TTTTGATATCCCGGAGACTATCGACAAAGA 66756 36 100.0 30 .................................... TACCCGGAATTGGAGAATTTGGGTCATCAT 66822 36 100.0 30 .................................... TATCTCCCAAATATAGAGGTCTTATCGAAC 66888 36 100.0 30 .................................... CATGCTGATGTTTGGACTGATACGGAAGTA 66954 36 100.0 30 .................................... TTCGTATAGATTAATTGCATCGGAGTCCAA 67020 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 67086 36 100.0 30 .................................... CGTCGAATTTGTCATTATTCGGTCGTCGAA 67152 36 100.0 30 .................................... CACAAAATGCTATCAACTAGAAGGTTATGT 67218 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 67284 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 67350 36 100.0 30 .................................... TCTAAGAAAAACAGAAAATAATCTTTTAAA 67416 36 100.0 30 .................................... GTTCCCCTATCTGTTTTAGTGCCTTCTCTG 67482 36 100.0 30 .................................... TACAATGAATAATCATATTACCGACTTAAC 67548 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAAATATCCTTTACATCTATTTTTTTCTATATCTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTTGCTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAATGCCAAAAGCGCAGTAATGGCAAAACATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTCTGATCCATCTCCGCCTGAGAAACTTTCACTGAAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 26008-26816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVR010000010.1 Listeria seeligeri strain FSL L7-0916 NODE_10_length_107762_cov_25.880670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 26008 29 100.0 36 ............................. ACAGGTCAAGAGTATATGATGCCAGAGTTAGGTTTA 26073 29 100.0 35 ............................. TAATACCACTTAGACAAGTTTTCACAAGTAAAGTC 26137 29 100.0 36 ............................. GCATTAATATTTACGTGATTATAGTCAATAGTGAAC 26202 29 100.0 36 ............................. ACTGCTTGCGTTTTTCAACAACTCGACATGGCAAAG 26267 29 100.0 37 ............................. TGACACGTGCAGCAACTGCTTTAAAGTCCGGATTTTC 26333 29 100.0 36 ............................. AACCTATCCGGGGCAGTGGTTAACAATGTGTTTGTC 26398 29 100.0 35 ............................. CTAACTCTTGAATAGCGCTCTGGAACTCTTCGTTG 26462 29 100.0 38 ............................. TGTGTAAACGGAGAAACGTTTGAAGTAGAGTTATTAAA 26529 29 100.0 35 ............................. TTTTCAACAATTTCACGTAAATCTTTTTTATAAAT 26593 29 100.0 35 ............................. GCTTGCTGAACGTTGTAATATAGCGTTCAAGCAAC 26657 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 26722 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 26788 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTTGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAATGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 33040-34300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVR010000010.1 Listeria seeligeri strain FSL L7-0916 NODE_10_length_107762_cov_25.880670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 33040 29 100.0 37 ............................. GAATACGCATTCGTTAAACACTTTTCAAATTCTCTTT 33106 29 100.0 37 ............................. TATGGACTCAGATAGATACTTTGTAAACACGATAGTT 33172 29 100.0 35 ............................. AAATATCCACAAAACGAATGTAGTTATGAATAATC 33236 29 100.0 36 ............................. TTAGAAAATTATCGAGCAAATGTTTCTGATGACAGT 33301 29 100.0 38 ............................. CCAGCAAGGCCATATTAATGGAAATTCAAACAATTGCA 33368 29 100.0 35 ............................. TCGTTATTGATTAGAACATAAAACTGTTCTCCAGC 33432 29 100.0 34 ............................. CCTTCTAATTGGAATTTGAACATACCATCGTTAG 33495 29 96.6 36 ......................A...... TCATAAATTTGGGGGCGGTTACGACAACTGTCGGAG 33560 29 100.0 38 ............................. CTTACTACAGCAGGCGAATACGACGAGGATAATTTAAA 33627 29 100.0 34 ............................. GAAGGTCTTTTTGACTTATTTAGTAATATGTTTC 33690 29 100.0 36 ............................. ATTTAGAAATCAGTGTGCATTTAAACGCAGGCGGGG 33755 29 100.0 36 ............................. ACTTTTAACGACGTTCGAGCAGGTCGAAGCAAAATA 33820 29 100.0 36 ............................. TTTGTATATTGCGTAACGGGGTACATAACTTCTTTG 33885 29 100.0 36 ............................. CGCATTTTTATGTCTAGTGAAAGTTCCTTAATCAAC 33950 29 100.0 35 ............................. TCAATCAAAACAATTGATTCATGGAATGGTTATGT 34014 29 96.6 35 ............C................ GAGGCATCTGCTAGTAAAGTGAAAAAAGAATTTAA 34078 29 96.6 34 ............C................ ACTTGACCGTTATAGCTTGCAAATAGGGCTTTTC 34141 29 96.6 37 .......G..................... TGGCATAATGCCCATTGACCTTGTAAGGTTGGTCAAG 34207 29 100.0 35 ............................. ATGTATTTCGAACAACTTTTATTAGGGTATAAAAC 34271 29 89.7 0 .............C..A...........G | T [34297] ========== ====== ====== ====== ============================= ====================================== ================== 20 29 98.8 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATTAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATTCGTTGGGAGAGAATGAGAGTGGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATACAGCAAATGTTGAAAAAAACACTAGTATTTTCAGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 42905-44035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVR010000010.1 Listeria seeligeri strain FSL L7-0916 NODE_10_length_107762_cov_25.880670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 42905 29 100.0 36 ............................. ATATTCAAGGGCTTTTGGAGTAGTTACTTTGGTGAT 42970 29 100.0 36 ............................. ACAATAACAATTTGATTTTCATAATCATGTTTTTCG 43035 29 100.0 37 ............................. CTATTTGCCCTTTATAGTTCAAGTATCAAAGATAAGT 43101 29 100.0 34 ............................. GAATAAAGTCCTACTTTGACCCCAGTTTGACCTT 43164 29 100.0 35 ............................. GCCATAGGAGCGCCTACAATAGCATCGGTAAGAGT 43228 29 100.0 36 ............................. CTTTTTTTAAAACATAGATAACCTTCGTCGGAAATT 43293 29 100.0 34 ............................. AGAAAGTTGTCGGCTGCGTTCATAACCTCACGAT 43356 29 100.0 37 ............................. ATGTTTTCTAGGAATCACCTTTGTATTATGAGATTTT 43422 29 100.0 37 ............................. AAATGTTCAGCTAATTCGTTGTTTGTTGCCGTAGGAT 43488 29 100.0 35 ............................. TAGGTATATTCCCGAACGTCACGATTCATTTCTTT 43552 29 100.0 36 ............................. AAAGGTGGCGATTTTCTAGGCATGTGTTCCGACGAT 43617 29 100.0 36 ............................. TATTCAACTGAATCAGGACCTTTTTTTGCTCCATCG 43682 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 43748 29 100.0 35 ............................. ACAGACGGCAATGAATTTCAAGAACGATTTTTAAA 43812 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 43877 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 43942 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 44007 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 18 29 97.1 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTTGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGGAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //