Array 1 87713-86845 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNRZ01000003.1 Klebsiella oxytoca strain 608815-17 608815-17_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 87712 28 100.0 32 ............................ TGCTGGTTTCCTTGTTTGTGATGGAGGCCCTA 87652 28 100.0 32 ............................ ACTACTGGCGAGCATTACCGCCGTAGCGCCAC 87592 28 100.0 32 ............................ ACAATTACCTCGGCTTACCGCTAAGATAGTTC 87532 28 100.0 32 ............................ GAAAGCACGTCGGCGGATTTTCAGTTCAGCAA 87472 28 100.0 32 ............................ TGCGATACCTTCAGCGGCCAACATCATCGACT 87412 28 100.0 32 ............................ GTAATCACTGGCGCTGCCTCGACACATGAGAA 87352 28 100.0 32 ............................ TGAAGAATGTCAGTTCCTGGACGGATTCATCG 87292 28 100.0 32 ............................ AGCAGCGCAGGGCCAACGTCCTCAGCGAGAAA 87232 28 100.0 32 ............................ AGACTGGCCGTGGTATCACTCAGGGCGTTATT 87172 28 100.0 32 ............................ TAAGTCCATGCTTAGCCCTCAGCTCTGCAATT 87112 28 100.0 32 ............................ TAAATCCCCCGCAGAACGCAAAGCCGCGCAGG 87052 28 100.0 32 ............................ TCATAAAAAAGGCCCGCGATGCGAGCCTGTTA 86992 28 100.0 32 ............................ GATCGCATCGTAGCCGGGATTAAGGCTGATGG 86932 28 100.0 32 ............................ GTATTAAGGAGCAGGAATGAAAACGCCAGATA 86872 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACTATAACCGGCGCGGTTTTTCGCGCCGATTTTTCAAGCGCTAATTAAACCCCTTTTTTATGATGAATCTCTATCTTATTGATTTTATATAGTGATTTTATAAAGGTCGGAAAAAGGGTTATGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCAGCA # Right flank : TCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAACGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAACGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 98335-96142 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNRZ01000003.1 Klebsiella oxytoca strain 608815-17 608815-17_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 98334 28 100.0 32 ............................ AAATTTCAGGAGTTCAGCCATGAACGCATACC 98274 28 100.0 32 ............................ AGAAAGATTTAGCCGCAGCTAAAGACTGGGCA 98214 28 100.0 32 ............................ TTATGGCGGATACTGGCGTGACAGGACTATGA 98154 28 100.0 32 ............................ AAATACGCTAATTATCTGCGTGGGCTGGTGAT 98094 28 100.0 32 ............................ TGACACCGGCACCGGTGATCCGTGCTGCTCTA 98034 28 100.0 32 ............................ GGATGGGGAAGCGTCGGGTCTGTTATCAGTGC 97974 28 100.0 33 ............................ ACGACAAAATATTCCGTGATGGGTCATTCCTGA 97913 28 100.0 32 ............................ TGAGGCGACGTTAGAGGTGCGAGATGACTAAA 97853 28 100.0 32 ............................ GGGAGGCTTATCACGGGTTTATTGTCCATATT 97793 28 100.0 32 ............................ TGCAAATTCACCCTCGCCCAGCGCGATGAGAA 97733 28 100.0 32 ............................ ACAAAGAAACTCTCCCGCTTTGCCCTCCACAC 97673 28 100.0 32 ............................ TGACAGACCAGACCGGCATCGAGAAGCGCAGA 97613 28 100.0 32 ............................ ACTAAGTTGCTGAAGAAGCACTGGCCGAAAAT 97553 28 100.0 32 ............................ TCTTCGCTCATCCCCGCGAACTCAATCCATCC 97493 28 100.0 32 ............................ TGGCATCAGCGCGGCTGGTATGAACAGCGCGA 97433 28 100.0 32 ............................ CGCCCAGCGTGATACTAAACGCCGGTTTTTTT 97373 28 100.0 32 ............................ GCAAAAGGATGTCCGCACTATAGCGGTAATAT 97313 28 100.0 33 ............................ ACCGATAAACCGGCGTGCCGCGTAGCGAACGGT 97252 28 100.0 32 ............................ TGATACATCGATGCTGTTCCCTGCGGGTCGTT 97192 28 100.0 32 ............................ TGTCGCATAACATAGTCGAAGTATGCTCCAGA 97132 28 100.0 32 ............................ TACAACATTAAGCATTACCACATTCAGCGAAT 97072 28 100.0 32 ............................ TACTTTGGCGGCGGTGGTGGCTGGAAGAAAAA 97012 28 96.4 32 ...T........................ TTAACCTCGAGCAGCAGGCCGTCGGACCAGTA 96952 28 100.0 32 ............................ TGGACGCCCGGCGCCGGCCATCGTGAGGATTC 96892 28 100.0 33 ............................ GCAACGCGAACACCAACGGGAACGCGGATCAGT 96831 28 96.4 32 A........................... ATGCGCACGTAGAACAACGGACGGCTTGCATT 96771 28 100.0 32 ............................ ATTGATGCCGGCTCCATTGCCGTTAGCACTGA 96711 28 100.0 33 ............................ GATGGTTCATGCCGTTTTGCTGATGGCTATCGT 96650 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 96589 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 96529 28 100.0 32 ............................ TTCACGAATGGGTGATTGTCGGTAAGCAGGAC 96469 28 100.0 32 ............................ ACACAGCCAGTATGAACTTCGTGCAGGCTGGG 96409 28 100.0 32 ............................ ATTGGATAACCACCGCTATCATTGCCGTGGTC 96349 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 96289 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 96229 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 96169 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCATCAGGTGGTGGATAAGTTTATCGTCGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGTGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTACGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAATCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTAGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTGATTAAAGTGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGATGTCGTTCGTTCA # Right flank : AGAGCTTGCCTATACTGCGGTGCAGGCTAAAACGATTTTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGGGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAATGGCGGCCGCGTGGAATATGTTACGAGCGAGGGGAACGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 111802-111594 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNRZ01000003.1 Klebsiella oxytoca strain 608815-17 608815-17_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 111801 28 100.0 32 ............................ TGAACCGCTGCAAAGATGGTCTGGCATTTAAC 111741 28 100.0 32 ............................ GGGTTACGCGCCTTCTTGAAATCTGCATACAC 111681 28 100.0 32 ............................ GGATGACCGCTCGCATCGGCATTTTTGAATTG 111621 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTGGGGGGCATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTTTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGACGATTGCCTTCCTTGGGGCAGGGCGCTATTCCATTGGCGGAACCTCGGCCTGGCGCTAAGTGCACCAGGGTTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCAGGGTCTCGCCGCTCGTTTTTCAGACCCTTTTTTTGGGAGTTATTTTAAGATATTGATTTTTTAATATTTTTTATTGTTGCCTCAAAAAAAGGGTAAAAGGGCTTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : GAGCCATGCTACCCGACGGTTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //