Array 1 2-914 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQF01000656.1 Fischerella thermalis CCMEE 5198 NODE_1048_length_1948_cov_16.832136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2 35 100.0 40 ................................... CATATAACCAGTTTGCTAAGTGTTCATCGCACCCCATGTT 77 35 100.0 38 ................................... CTGGGGTAACGGTGGTTCCGTTGTCCAGACGGACAGTT 150 35 100.0 39 ................................... AAATCCAAATTGGTAGTCATAATTCAATGCTAATAAAGT 224 35 100.0 41 ................................... ACGGCATACATGCCCCACCAAAACGCGGCAAGACCCAGATA 300 35 100.0 36 ................................... ATTCCACCTCATTCCACAGTTGCGGAATGCGAGCGT 371 35 100.0 37 ................................... GTTGAATCGCAACGCTAAGAAGCATCATAGAGCCAAT 443 35 100.0 39 ................................... CCTTAGCCGATTGAATCAGCAATGAGCCAGTTTGCAGGA 517 35 100.0 36 ................................... TTTAGCCCCAGCATCAACTTTTTCAATTAAGGTAGA 588 35 100.0 40 ................................... ACAGTGATGCCACCAGAAACTGTATCACCAGAAACTGCAG 663 35 100.0 37 ................................... CGCTTGCTGTCACCAAGGCGCCAGCTGCGAGATACGA 735 35 100.0 36 ................................... TTCATGCTTGGTACCGACATTGCTGTAGGCATCGAA 806 35 100.0 39 ................................... ATGTTCAGTCATTTTCTTCTTTGAATGTGAAGGACAAAT 880 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 13 35 100.0 38 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : TC # Right flank : CCAGTTAACCGAATTTCTCACAAATGAGAAATTCGGTTTTTGTCTTTACCGAACGGTTTTAGAATACTCTGAAACTTTGACAAAAATAAAAATATCCCCTAATTCTTGAAGAAATCGGGGATATAAAGTTATAAATTTTGACAAATTAAATTGCTGGTTGTTGGGTTAACCAATTTTGTAAATTAGATAGGGATGAAAATCTCAGAATAGCTCTACCTAATGCTTCTAACTGTTCCTTATTTAAAACTTGCAGTTGTTCAACAATTGACGCATCAATTTCACCGAAGCGTTCATCAAGTAACAACAGACAAAATTTCAGTGCTTCTTGCTGTTCACCCCGTTGTTCACCTTTGTCCAAAATATACTGATAAATCACCGACTCTTGCATAGTCTCCTCCCGTAACAATTTTAAAATCAAATCTTGCTCAAACTTTAACCCTGCTAATATTTCTGTATAAGCTGCTGTATTCTGTCTAGTCTCAATATCTGAAATTTTAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 553-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQF01000889.1 Fischerella thermalis CCMEE 5198 NODE_1946_length_512_cov_16.486328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 552 37 100.0 37 ..................................... CTCAAGCGTAAATTCCGATTACCCGGGCAAACACATC 478 37 100.0 35 ..................................... ACTGGCGGCGCGGCTAACTCCACCATATATCGCAT 406 37 100.0 43 ..................................... GCCTTCTACACAGACAATGAAGGACAAGTAATTNNNNNNNNNN 326 37 100.0 37 ..................................... CATTTATGTAACGCTGATTAGCAAGAGTTACATTAGA 252 37 100.0 35 ..................................... GAATCCTCCAAAAGTGGTGGAATTAGGCGCCTCTT 180 37 100.0 37 ..................................... TTTTGATAGTAGAAGGTCTTGTTCAAAAGACAAGAAA 106 37 100.0 32 ..................................... AGGGTATGATTCTACCTAAATTCAATTTGAAG 37 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 100.0 37 GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 3-184 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQF01000850.1 Fischerella thermalis CCMEE 5198 NODE_1719_length_2101_cov_24.635887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 ..................................... GCCGTGCATTTGTGCTAAGTTAAGTTTTTTGTAATC 76 37 100.0 35 ..................................... TTTGCAAGTGCAACACAAAAGCAACGCCCTAGGCT 148 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Left flank : AAG # Right flank : CAGTGCGACTCATTTTTGAGTAAAAATACGCACTAGTATATAGCTCAAAGTGAGAACGACAAGGACCAAAACCTTGAAAATTCCATAACTAAATCTCGGATGTAGGTGTAAATCCTACCCTGGAAAGGAAACAGTGACTCCCAATCTATCCACGCCGAGTAGACTCGGAACTCTACAGAGCGAAGCTGGAAATAAGGGCGCAATCAGAGCTAGAAGCAGATATGGCACACTGGCGCTAACGGGGAGATAGCATGGATAAACAAGACCTAAAAAAGCGTCTCAATCCCAAGCGATAATCTGATCACAAAATATCGACTTGATATTCAATTTCTCGCAACAATATTGTTTCGTTAGTTGCATTCCTTTTGAGAAGAATATAGGCGAAATGGTCTGTCCTAAACTATCAAAATAATCTGAGAATTGGAACGAGTAAAAATGATGTTGGAGTCTGGGAAAAAAGGTCGAAATCCCAGTAGGTAAGACGAGATACGTAAATCTCT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 1091-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQF01000896.1 Fischerella thermalis CCMEE 5198 NODE_2028_length_1050_cov_20.273333, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 1090 37 100.0 36 ..................................... TTCGATGCGCTAGCCTTAAAAAAATTGCCCAGACCA 1017 37 100.0 35 ..................................... TTCCTTAACTTCAATTGCAAATGGAAGCTCTAGTC 945 37 100.0 47 ..................................... TTTAGTGAATGAACTAAGAGAACTTGCTAAAGGANNNNNNNNNNGCA 861 37 100.0 45 ..................................... GTACTGCGCCGCTAGCTCTTCCTTGTTGTGGATATNNNNNNNNNN 779 37 100.0 35 ..................................... GTTGTTGATTGGAAGCCCAGTATGGGAAATAGAAG 707 37 100.0 35 ..................................... TGATTGGATTAACCAACAAGTAGTCGGCCTTTGCC 635 37 100.0 41 ..................................... TACAAAAATTTTATTGCGCCATTCTGCATCTNNNNNNNNNN 557 37 100.0 38 ..................................... TTGATTTGGCTCCCTATTTGTTTAATAGTGAGCCCGTA 482 37 100.0 35 ..................................... CTTCACTAGTGACGACATCTTTAAGGGAATGCAAA 410 37 100.0 41 ..................................... TGCAGACTTATTCAGCAAACGAAGTTTGCAGACTTATTCTG 332 37 100.0 38 ..................................... CGATAAGAAAAGCTAATCATAGAGGAAATTCTATGCTT 257 37 100.0 37 ..................................... TTTCTATGCAGATATGAGAAAGCATAGAATTTCCTCT 183 37 100.0 36 ..................................... GAGGCGAGAGCCAGTGAATGCTTTAGTGACCAGGCT 110 37 100.0 36 ..................................... GGTAGAAAGTGGTATAAATCGAATACCAGTTTGAAC 37 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 15 37 100.0 38 GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 1-555 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQF01000892.1 Fischerella thermalis CCMEE 5198 NODE_1986_length_786_cov_23.926208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1 37 100.0 37 ..................................... AGCTTCTTGTTGTTTTGAAAGTTGCACCAAATCACAA 75 37 100.0 41 ..................................... TTNNNNNNNNNNACCTGGTGTGAAGCTTGCTGCTGACCCAG 153 37 100.0 34 ..................................... CTCTAGCACTAGAGACAAAGAACTCTGAGACCAC 224 37 100.0 34 ..................................... TTCGCTCTTGTAGGCGCCACTGGCCGCCGCCCTT 295 37 100.0 38 ..................................... TTTTCCAAGCTTGTGCAGCTCTACACTAAAGGCTTTGG 370 37 100.0 36 ..................................... TATGACCAATCACCTTGCTAGAGGGGCAAGCCGCCT 443 37 100.0 39 ..................................... GGGCCGCTCTTCTTCTTCTCTTTGTTTCTCAGCAGGTTG 519 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 100.0 37 GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : ATCTCTGTGCAGCGATATATCATTCGCGACGGCGGGATTCTCTGTGATGTCACCAATCTAGATGTTTATGCTCATGCAATTAAAGATGCCTTGAGTAGCAATTAGAGTGAGCGTGCAAAACAAAATGCAGCAAGGTTTAGTTGGGATGCGATCGCGCTGGGTTATCGTGATGTGATTCTAGAAACGATTGTGCAATCTCAGAAGAAATTATCTTTACAAACTAATTAAATTGAGGGGTATATTATGCCTAAAGTTTCTATCATTATTCAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 5-842 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQF01000674.1 Fischerella thermalis CCMEE 5198 NODE_1096_length_805_cov_19.684471, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 34 ..................................... GAACCCCCATGCTTCTTTACACACCACGTTGTAA 76 37 100.0 35 ..................................... CTCACTTGACCAATGTCTTTCTTATAAGGCTGCAC 148 37 100.0 39 ..................................... TGAAGGGCAAGCAAAAACAAAAACCCGCGATGATGTGGG 224 37 100.0 34 ..................................... GAACTGGACATTAAGACCAAGCGCTTCTTGCAAG 295 37 100.0 39 ..................................... ACCGTAGATTCCAAACAAACCCATGGGGAGCAGCTATTG 371 37 100.0 35 ..................................... GTCTCTTCCACACAAGAGCACTCTGTTTCCAACCA 443 37 100.0 35 ..................................... GCTTTTGTTCATGTGGCGAAGCATTTGGCGAGCTG 515 37 100.0 35 ..................................... ACACGCTCTAGCAGACCGAGAGAGGATGCTCTCCC 587 37 100.0 35 ..................................... CCATGCCTTAATTGCTTTGCATTCCACCACCAAGG 659 37 100.0 37 ..................................... AATTTCTAAAGTACATACAAAGTACAAAGGAATTGTT 733 37 100.0 36 ..................................... TATTGGGTTGGGGTGGTGTTCTCGCTAATGGGAGCC 806 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 36 GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAT # Left flank : TGGGG # Right flank : ACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //