Array 1 42698-42940 **** Predicted by CRISPRDetect 2.4 *** >NC_013156.1 Methanocaldococcus fervens AG86, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 42698 23 100.0 57 ....................... TGGGAATTATTGTCCCTCCGTTTTGTTGTTTTTGTTGTTTCACAATTATATCATTTG 42778 23 87.0 50 ..............A.....AA. TGGAAATTTTATAACAATATAAAAGCTGTGTTCTATCGTTTTTTCCTTAA 42851 23 87.0 44 ...............TCT..... GGAAAGAGTTTTTTAAACATTATATTTTTTACTGTTTTTCAAAT 42918 23 82.6 0 .............A..T...AA. | ========== ====== ====== ====== ======================= ========================================================= ================== 4 23 89.2 51 GTTAAAATCAGACCGGAACGGTA # Left flank : TGATAAATAAAAAATTGGATTTAGCTTTAGATGAAGAGGAAATTAAAGAAAGATTGGCAAAATGGAAAAAACCTGAGCCAAAAGTCAAAAAAGGTTATTTGGCAAGATATGCTAAGCTTGTAAGCTCAGCAGATGAAGGGGCTGTTTTAAAGTATGATTAATAAGATTGTATTTTTAGATTATCTCGCTGGATAAATTTTATTTTTAGATTTTAAGGTTTTTTATTGAATTTCGAAGGGTATTAAGTATTTGAATTAATTAAAATATTAAGATTTTTTAAAAGATTTTAGTTAATTATCTTTTAAGGCATATTTCCACAACAAATAAATTATATTTTAAAAAATAATTGCTTTAAAATTCTTTTTTAGTTCTAAAAAGCAAAATTTATATATGTGCAGAGGTATATAAACAAATGGGGTTAAGTACCCTCGACTTATAGGGTAGAGTAAAGCATAAATATTATGAGTGTTAAAAATGTGCTTATCTCAAATAATTGCCCT # Right flank : ATGAAATCTAAGAAAATAAAAAATCAATTTTTAACTTTTTTACATTTTGCAATAAACACATTTTTTGTAAGTATTGGAGTTAGTGTAGCTGTTATCACCGATAAAGCAACGATTGTTACAAATATTTCATTTCCTATTAAACCAAGCTCTTTTCCGATTGATGCAGCCACTAAAGATGCTGAAATTTTTGGGATTGTTAATAAACCTCCAATAGTGTTTTTTACCCTATCAAAACCTAAAATTTTCAAAGCTATAAAGCCAGAGAAAAACTTCAATGTCACAGCTGAAACTAATGTTATTAATAATAGCTCTAAATTGCTTAAATCAAATATAACCCCAATGTTTGTTTCCATACCTAAAACTAAGAAGAATATTGGTATAAATAAACCATAACCAATTGCGTTTAAATTTTTGTTTAATAATTCGTCGTGCTCTTCTTTAGTTAAAGCCTCACTAACGGCAACGCCGCAAATAAACGCCCCCACTATTGGATGAATTCC # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:-0.55, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGGAACGGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 282885-281438 **** Predicted by CRISPRDetect 2.4 *** >NC_013156.1 Methanocaldococcus fervens AG86, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 282884 30 100.0 38 .............................. CGGTTGTCATCAAAGGAGTATTCATGTTGTTTGTTGTC 282816 30 100.0 38 .............................. ATTATTTACTTTCTACTATATAAACTTTTCGGTTATCG 282748 30 100.0 37 .............................. GGCTTTCCTCATAATTTCACCTTATTTTTAACCATTG 282681 30 100.0 38 .............................. GTAAATTCTTATCTTTCCTTCATTATTCCAACCTGTAA 282613 30 100.0 37 .............................. ATACCTATTGCTGCCCCTACTCCTGCAATTGGTTCTA 282546 30 100.0 34 .............................. AGTTTGATAAGTTTGGGAGCCAGAATATTGATAA 282482 30 100.0 37 .............................. AAAGTTGAAGCACCCGCTCTTGCACTACCAAGCATTG 282415 30 100.0 37 .............................. ACAGCTCAGCAATATTATTAGATTATATAATATTGAA 282348 30 100.0 38 .............................. CTCCGAGCCCCATTAGCAAGCCCGCCACTTTAAACATA 282280 30 100.0 34 .............................. TATTCTGAGCTTCCAGTGGATGTAAAAGAGCAAG 282216 30 100.0 39 .............................. GATTTAATTGCCAAAGTGCCATTTTTCACTGATATATAC 282147 30 100.0 37 .............................. ACATTTGATATTTAGTTTTACTATTGGCATATACTAC 282080 30 100.0 38 .............................. TTTTAGGGTCTTTAATCAATCCCAGTTCCTCCAATAAC 282012 30 100.0 38 .............................. TTTTAGGGTCTTTAATCAATCCCAGTTCCTCCAATAAC 281944 30 100.0 35 .............................. ATGAAGCCTGTATGGCTGAGGACTGAAGGAGGGGT 281879 30 100.0 36 .............................. ATGAAGGCTATAAGGTCTTTAAAATCAAGTGTGACT 281813 30 100.0 36 .............................. CTTTCTCTCTCTTCTCTCAAATCGTCTTTTCTTGTT 281747 30 100.0 36 .............................. TGGCAGGCGCAAAGTCCTCATTAACTGAAAACACAC 281681 30 100.0 42 .............................. TATTTTCACCTTTCATTTACTAATTTTTTAACTGTTAAAATC 281609 30 100.0 40 .............................. TGTATATCAAAAAATATTCCTACCATTTTTCATCACTCTT 281539 30 100.0 42 .............................. TTTGGTTGAATCTCTACAGTTGAAACATTTTCAAATCTTCTA 281467 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 22 30 100.0 38 GTTAAAATCAGACCGGAACGGAATGGAAAG # Left flank : AAGTGATTTGAAAAATAAATTAACAGCAAAAGTTGGGATAGATGCAACAATGAGCTTAATTAAAGGTAGAGAACATTTTGAAAGGGCTAAAATTCCTGAAGAATAATTTTGTATTTAAATATTTAGATTATACTTATCTCGCTGAAAGAGTTTTATTTTCGAAATAAAGGTTTTTTATATTTTATTTTTCGGTTTTAATGATTTTTAAGAAATTTCGAAGGGTTGGGTATTTTGATTATTTTAAGTATTTAGATTAATTAAATTATATGGAATTTTTAAAATATTTTAGTTAATTATTTTTAACTAAAAATTTCCACGATATATTAGTAAGATTTTAAAATTTATGTCTTTAAAACTCTTTTTTTAGTTCTAAAAGGTAAAATTTATATGGGTGAGAAGATATATAAATGAATGGGGTTAAGTGCCCTTCGACTTATAAGGTAACGAAAAGCATAAATATTATGGGTGCTAAAAATATACTTATCTCGAATTATTGCCCT # Right flank : TTTCAATTTGAAAAATACAACAAGATTTTTTATCCCAAGTTTAACTGCCCAATTAAATACCCCCTAAACCAGGAATTAATAACGAGAAAAAAGTTAAAACTAGAGAATTTTTAAATTCTTCCCTTAAAGTTTCATTATCTACTTCTAAACCGGCTAAACTAAAAGTTTCGTTTTGATCAGCCCTCTTCCAAAAGGTGTTCGAGCAACCTCTTACTAAAAGGTGGATTTTAGCTTAATTATCAATTCTCCAAATAACTTTTCTTGGATTAGTTCGGCTTTTCCATCATTTGCTAGGTATAGGGATGGGATGAAATATCTAACCCTCTCTTCCCTTGTCCTAAATCTTTCCTGATAGATTATAATACCCTCCCTTATCAAATCCTCTAACAACTCTGCTATTATATCTGATATATCTTCTTCTTCTATAAGCTCTTCTATAATTTCCTCAACCTCTTTAGTTTTTTTCTCTTTCTTTTTTCTCGATTTTTTGACTTTGTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGGAACGGAATGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 3 347389-347890 **** Predicted by CRISPRDetect 2.4 *** >NC_013156.1 Methanocaldococcus fervens AG86, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 347389 30 100.0 34 .............................. ATGTGTTCTTCACCGATTGCAATCAACAAGTCTG 347453 30 100.0 36 .............................. ATCAACTCCACAATTTTTTCAATGGTTATGGTGCTA 347519 30 100.0 37 .............................. TTGTCATTTGCTATTTTATTAAGTGCAAGATAGTATG 347586 30 100.0 43 .............................. ATATAGAGTTTTGAGAAGTTTCATGTTGCTCACATTTTAATGG 347659 30 100.0 36 .............................. CTCGCTCGCAAATCCTTAGATATTGCAAAAATCCCA 347725 30 100.0 36 .............................. TATTGAACATTCAAAAATAAAAGACACTTCTAAAGA 347791 30 96.7 40 .............................T AATTGACTCTCTGTTACTTCTATTTTCAATATTTTGCCGT 347861 30 80.0 0 ........A....A.TCT...........C | ========== ====== ====== ====== ============================== =========================================== ================== 8 30 97.1 38 GTTAAAATCAGACCGGAACGGTATGGAAAG # Left flank : CACAATGTCCAATAGATGCGATATACATGGATGAAGAATATAATGTAGTTTTTAAAGAAGATGAGTGCGTTGGTTGCAAAAACTGTATGAAAGCCTGCCCATTCAAAGCAATTGAAATTATCGAATAAATGGTTATTATCTCGCTGAATAAGTTTTATTTTTGAAATAATTAGTTTTTATATTTTATTTTTCGATTTTAAGGATTTTTAAGAAATTTCAAAGGGTAAGTTATTTTAATTATTTTGAATATTTAGATTAATTAAATTATATGGAATTTTTAAAATATTTTAGTTAATTATTTTAACTAAAAATTTCCACAATAAAAAATTATTATTTTAAAAAATAATTGCTTTAAAACTATTTTTAAGCCTAAAAATTAAAATTTATATGGATGAGAAGGTATATAAATGAATGGGATTAAGTACCCTTCGACTTATAAGGTAGAGTAAAGTATATATATTAATAATGCTAAAAATATGCTTATCTCGAATAATTGGTCT # Right flank : CGCTATGCCAAAAAGAGACGAGAGTCCTGCCCAAATACACAATAGTCAAAAATAGGATTGATACTTAAAAATCTCGGGATTGGACGTTAGATTGGATTTGAGTAAATTAAAATAGAAAAACTAAAATTAATTCATTATTAATGAGAAAATAGAAAATTTATAAAAATTATTCTTTTTTTCCATTGTTTTGTGAAGTTGGATATGGCATAAATTCAACAGTTCCCCTCTGTTTAATTGGCTGTTTATAAAGCTCCATTAATTCATAAACCTCTTCTGGAACATTTGTATCAACATCTAAACCAAGATTTTTAGCCTCTTCAACAGTTATTGGATAATCGTGAGTCCATTTACCTTCTGTTAATATCTTAGCTAATTCTTTAGCTTTTTCTTTTCCGTATTTATCTTTCAATAGAGTATATACAAAATTTTGAACCTGGTTTATTGCTTTTTTGGCAATATCCGCCAATATTAATGTTTGATCATCAACCTTATCAGCTCCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGGAACGGTATGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 4 414323-414160 **** Predicted by CRISPRDetect 2.4 *** >NC_013156.1 Methanocaldococcus fervens AG86, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 414322 30 100.0 38 .............................. AGGGATTGTTCCTTTTTTGATATGTCTTGTTACTGTAG 414254 30 100.0 35 .............................. TAGATATAAGGCAAAGTATAGGCAATATCCAGAGA 414189 30 83.3 0 ..................A....A.A..CT | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 94.4 37 GTTAAAATCAGACCGTCTCGGTATGGAAAC # Left flank : CTACTGTTGTTAAGTGTTTAACATGTGGGAAAGTTTTAGTTGAGCCAAGAGGAGGAAAAGGAAAAGTTAAAGCTAAAATTTTAGAGATTTTAGGATAAATTCCTATACATTTTTTTAATTATTTATATTATACTTATCTCGATGAAAATTTTTTATTTTTGAAATAATTAGTTTTTATGACTTATTTTTCAATTTTAAGTTTTTTTAAGAAATTTCGAAGGGTAGATTATTTTAATTATTTCAAATATTTAGATTAATTAAATTATATGGAATTTTTAGAATATTTTAGTTAATTATTTTTAACTAAAAATTTCCATAATAAATTAGTTAAATTTTAAAATTTAATAACTTTAAAATTCTTTTTTACGTCTAAAAAGTAAAATTTATATGGGTAAGAAGGTATATAAATGAATGGGGTTAAGTACCCTTCGACTTATAAGATAACGAAAAGCATAAATATTAAGAATGCTGAAAATATACTTATCTCGAATGATTGCCCT # Right flank : CCTCTTATTTTTATCCTAATTTATCAATATAATTAAATATATCAATAACTTTTTTATAAAAACATTTAATAAGAAAAAAATAGAAATTAAAATTAACAAAAAAATGGTGGTAGTATGGAAATTATTTTTAGAGGGGCAGCGTTAGAGGTTGGGAGAAGCTGTATAGAAATAAAAACTGACAAAAGTAAAATATTGCTTGATTGTGGGGTTAAGCTTGGAAAGGAGATTGAATATCCCATATTGGATGAGTCCATAAGAGATGTGGATAAAGTTTTTGTTTCTCATGCTCATCTCGACCATTCAGGAGCTCTTCCAATACTATTCCACAAAAGAATAGATGTTCCAATAATCACAACTGAATTATCAAAAAAATTGATTAAGATTTTATTAAAAGATATGGTGAAAATTGCTGAAACAGAGAGTAAGAAAATACCCTACAACGGCCATGATGTAAAAGAGACTATGAGGCATACAATTCCATTAAGCTATAACGAAAAAAA # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTCTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 5 532048-531679 **** Predicted by CRISPRDetect 2.4 *** >NC_013156.1 Methanocaldococcus fervens AG86, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 532047 30 100.0 35 .............................. ACCTTGTTATCTTAGCTCATATTGTAACAACACAT 531982 30 100.0 40 .............................. GGGAGCATCGTCTAAGTCAGGCTTTGAAGAGCTACCTAAA 531912 30 100.0 42 .............................. TTTCTAAAGTTAGCAGGTTGGGAGTGCAGTAATAAAGTCCTG 531840 30 100.0 37 .............................. TGTAGATGCTCTCTTTTTTATATCCTTCATCAATTAA 531773 30 100.0 35 .............................. TACAAATTAGACAGCATGGCTTAATCACGCATATT 531708 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ========================================== ================== 6 30 99.5 38 GTTAAAATCAGACCGTTTCGGAATGGAAAT # Left flank : TTTCTTGCAAAGGTTACTACACTTATGGTATTTCTAAATTATTTGGTGGTTTTAACAAAAATCATCCAAATGATGATGATATAAAAAAGGTAAAAGAATTTGCTAAAAATATTTTAAAAGAGTTAAGATGATATTTATCTCACTGAAAGAGTTCTATTTTCGAAATAAAGGTTTTTTATGACTTATTTTTAGATTTTAAGGATTTTCAAAAAATTTCGAAGGGTAGCTTATTTTAATTATTTTAAGTATTTAGATTAATTAAATTATAGGCATTTTTAAAAGATTTTAACTAATTATCTTTTAAAATAAAGTTCCCACAATAAATAAGTTATATTTTAAAAAATAATAGCTTTAAAATTCTTTTTTAGTCATAAAAAGCAAAATTTATATACGAGCAGAGGTATATAAATAAATAGGGTTAAGTGCCCTTCGACTTATAAGGTAGGGAAAAATATAAATATTAAGAATGCTGAAAATATACTTATCTCGAATAATTGCCT # Right flank : ATAATACCATGAATGAGAAAATAGACTAGTACAGTATGGAAATTTTACAATAAGTTATAACTAAACTTCTGAAAGAACAACATATAAGCCCTTTATTAATTTTGGTAAAAAAGTAAATGAACTTCCCAAAATGTTTTAAAAATTTAGAAAATAAAAAATAATATTGCTAATTTACCTATTCAACTTCTCCTCTATCTTTTCTTGTAATTCCCCCCTCTTCTACTAACTCTAAACCTTCTAAAGGAATAAATCTATCTTCTAAAGCTTTTAAAACCTTTGGAACTGTTGTGTATTCCATCATTGTTGCTGGTAATCTGTGTGGTTGGAATGGACCCATTCTTCTTATTATATCTGCCATCTCTAATGCCTTTTCTCTTGCCTTATCAAAGCCCTTATCTGCAAATAAATCGTTAGGACCAATTAACATTCCATCGCAAACTTGGAACCCTAATGCTATAATTCTTGCCGGTCCGTCAAATCTTGTAGGTGTTGCATCCTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTTCGGAATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 6 675146-676254 **** Predicted by CRISPRDetect 2.4 *** >NC_013156.1 Methanocaldococcus fervens AG86, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 675146 30 96.7 38 .................A............ CCGAACGACACTAAGATATTGTGGTTTGATACAACAGT 675214 30 100.0 36 .............................. TGTAACATTGGATTGTAAAGTTACAAAAACTAACAT 675280 30 100.0 42 .............................. ATTGAAGAAATATCCGTTAACTGCAGGAAGAGAGTAATGTTT 675352 30 100.0 37 .............................. AATATGTTATTAAACAGCTAAGAAGTGAGTATGATAA 675419 30 100.0 35 .............................. CCACTATAAACAGCTGTAAGCTCTATACTATCATC 675484 30 100.0 40 .............................. TTTGTTTAAGCTTCTCTTTCTTCTTTATAGCCTTTTCAGC 675554 30 100.0 40 .............................. TGGTTATAATACACACTCGCTCAGGTATGCGTTCATTACT 675624 30 100.0 33 .............................. TATTTGCTCTATGTGCTGTAATGTTGCCGATTC 675687 30 100.0 37 .............................. TCTACATAAACTTTTGCAGTCAGAAATCTCGCTTCTG 675754 30 100.0 37 .............................. AAAAATCTCTCAGAGAAAATAAAAGACCTGCCGTTGC 675821 30 100.0 39 .............................. TTAAATTCCAGCCTCTTCTCCTTCTTCTTTAACTCCTCC 675890 30 100.0 37 .............................. AATTATATACCAGATAATGAAACAAGAAAAGAGTATG 675957 30 100.0 38 .............................. GGAAAAATAGCCAAGATAGATGTAGGAACAAGCAACTA 676025 30 100.0 41 .............................. TTGGGATTATGGTCCTTACTATCTACCAAGACCCTTAGAGG 676096 30 100.0 36 .............................. TCATTAGCTGAAAAGCTGAAAGCACTTAAAAAGGCA 676162 30 100.0 33 .............................. ACCTTGCAGTCATCAAATTCAAATACGCCTTCA 676225 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 17 30 99.8 38 ATTTCCATACCGTTCCGGTCTGATTTTAAC # Left flank : TTGAGATTTTAAATAGGGGGCATAACGTATCTGACACAATAAATGCAATAAAAGAATGCCATAAAAGAGGGATAAAAGTTTGTGGACATATTATTTTAGGATTGCCAGGAGAAAGTTGGAAGGAAATGATGGAGACGGCAAAAATATTATCTTTATTGGGGGTTGAATCAGTTAAGATTTACCCGTTAGTGGTTATTAAAAATACAAAATTGGAGGAGATGTATTGGATGGGAGAGTATAGAACTTTAGACGAAAAACAGTATGTGAATTTGGTTTGTGATTTTTTAGAGCATTTATCTCCTTATGTATTAATTCAAAGGCTTTCAAAGGATAAGGTTCCAGGAGAGATTAAAATTTCTCCAGAATGGGACTTAAATAGGTTTAAAGTTATGAACAGAGTAAATGAGATATTGAAAAAAAGAGGTAGCCGACAGGGAGCAAAATTTTATTTCTAAAAATTTCTTTTCTATTTTTATTTTATTTAATTATTCATATAACTA # Right flank : CAGGGCAATTATTTGAGATAAGTATATTTTTAGCATTCTTAATATTTATGCTTTTCGTTACCTTATAAGTCGAAGGGTATTTAACCTCATTCATTTATATACCTCTGCATACATATAAATTTTGCTTATTAGACTTAAAAAAGAATTTTAAAGCAATTATTTTTTAAAATAATAATTTTTTATTGTGGAAATCATACTTCAAAATAATTGACCAAAAACTCTTAAAAATTCCATATAATTTAATTAATCTAAATACTTAAAATTTCTAAAATAAACTTCCCTGTGAAATTCAATAAAAATTTCCAAAATAGAAAAATAAGTTATAAAAACTAATTATTTCGAAAATAAAACTCTTTCAGCGAGATAAACACAATTTAAATATTTAAATTTAATAAAAAACAAAGAATAAGAATTAAAGCATAATATTATAAAAGTTAATGCCATATCACAACATCAATAAATTGAAATGAGGGGGAATATGATTATTGGAATATTAGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCATACCGTTCCGGTCTGATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 7 717618-718580 **** Predicted by CRISPRDetect 2.4 *** >NC_013156.1 Methanocaldococcus fervens AG86, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 717618 30 100.0 37 .............................. TTTTAGAGGCGAAGCATACCTCTAAACAATTGACTTT 717685 30 100.0 38 .............................. CCAGTAACGTAAACTAATATCATGTGAATGAACATTAT 717753 30 100.0 37 .............................. TAAATGCAAATATAAAAAGTGATAATATGACAATGGA 717820 30 100.0 37 .............................. TTTTAGAGGCGAAGCATACCTCTAAACAATTGACTTT 717887 30 100.0 34 .............................. ACGAATCTCGCAAGCGGCTTCAACCCTAATAACA 717951 30 100.0 36 .............................. TTTGAATTGAATCCAAAGAAAAGATTAAAGGAATAT 718017 30 100.0 36 .............................. AGCATTTTATCCCTCATTTGTTAGTATTTCTAATAC 718083 30 100.0 36 .............................. AAAAGGGAGTTTTAAGCCAAATAATTTAGCAATAGA 718149 30 100.0 35 .............................. CTGTATTTTTCAATTATCTCTACAATGTCAATATC 718214 30 100.0 35 .............................. TCATTTTTGAATTTCTCAGCATCTCTTTCTTGTAT 718279 30 100.0 38 .............................. TATATTAAGATTACTTTCTTTGCCATGCCTTACCACCA 718347 30 100.0 39 .............................. GATTTAATTGCCAAAGTGCCATTCTTTACGGACATCTAT 718416 30 100.0 36 .............................. TTTCATGCCATGATTTGGTTGCTTCATCATCTACAT 718482 30 93.3 39 .....................A.......C ATGAGGATTTTTTAAGCTTCTCATCATCTTTAAAGTGCT 718551 30 70.0 0 ............GTCTT.GA.A...A.... | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 97.6 37 GTTAAAATCAGACCGGAACGGTATGGAAAT # Left flank : TCCCATATCTATAGTCAATTGGATGTACTGCCATTTTTTCACCATGATTGTATTTTGATTAACTTTAAATTAATGTTAATGATTTTTATAGTTTGATGAAGGGTTAAAATAAATATAAATATTTAGATAATATTTATCTCGATTAAAGAGTTTTATTTTTTAAATAAAGGTTTTTTATAGCTTATTTTTCGGTTTTAATGATTTTTAAGAAATTTCGAAGGGTAGTTTATTTTGATTATTTCAAATATTTAGATTAATTAAATTATAAAGATTTTTGAGAGATTTTAGTTAATTATCTTTTAAGGCATATTTCCACAACAAATAAATTATATTTTAAAAAATAATTGCTTTTAAAATTCTTTTTTAAGTCTAATAAGCAAAATTTATATATGTGCAGAGGTATATAAACAAATGGGGTTAAGTACCCTTCGACTTATAGGGTAGAGTAAAGCATAAATATTAAGAATGCTAAAAATATACTTATCTCGAGTAATTGTCCT # Right flank : TATTAACACGCTAAAATAAAGATAGACTTTGAAGAAAACTAGCATTGTATTATAAAATAGACTCAAAATAAAATTAAACAATAAAAAATTATTTGGATGATATAATTCTGGCTATTTTGTATGGAATCACTGCAAGCAATCCACATATTAAATATATGTTTAAATCATTAAAAATACTCCAATCTGCCCAATCGTCAAAACCTAACAAAAATCCTATGGCATTAGCTATTAAAAGCAATAAAGCTATAATTCCAATACCTAAACCCACTATTGAAGCAGTAAATAAATAAGAAATCGCCCTTATATCTTCATTTACAGCCTTTTTTACTCCTAAAAGGTACGTTATTCCAACAGCAAGTAATGCCAACCCTCCAAAAACATCTCCAACAAATAAAGGCAATTCACTTTCAACACCAACTACTGAACAAATCCAAACTACAACCTCAATACCTCCAGAGAATAAAAATAAGAGTCCAAATACTAAAGATAATAAAGTTATA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGGAACGGTATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 8 760023-760581 **** Predicted by CRISPRDetect 2.4 *** >NC_013156.1 Methanocaldococcus fervens AG86, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 760023 31 100.0 36 ............................... TAACATAATAGAGTGGCTACGGCTTGGGTTTTGCCG 760090 31 100.0 33 ............................... AAATCTTCTACATTTGCTTCTTCTTTTATTCTT 760154 31 100.0 36 ............................... ACAAATTCCTCATAGCTTAGAGTTCCGTCTTTAATT 760221 31 100.0 36 ............................... ACAAATTCCTCATAGCTTAGAGTTCCGTCTTTAATT 760288 31 100.0 35 ............................... ATGACGGCTGTTTTTAGAAGCAACGACGCTTTATG 760354 31 96.8 33 ..............................G TGATGGACCAAGCAGTTAACGACACAAACCCGT 760418 31 96.8 36 ..............................A AAGAAGTAATAAAGACTGCTGGATTCTCAATAATTG 760485 31 100.0 36 ............................... AAATACGAGTTCTACGATATTATCTACTGCGTTAGT 760552 30 90.3 0 ........................GG..-.. | ========== ====== ====== ====== =============================== ==================================== ================== 9 31 98.2 35 GTTAAAATAAGACCGTCTCGGTATCTAATAC # Left flank : AGTTGCAAAACCACAAACAGCTTTTAAATATGCTTTTATGAGTTTTGCAAAAATATAATTTTTGAGGTTATATTTAAACATTAAATATTGATGTTGAGATTTTTTATTATTATAAATTCAAATATTCAGATTATGTTTATCTCGCTGAAAGAGTTTTATTTTTTTAAATAAAATTTTTATAACTTATTTTTTGATTTTAGGGATTTTTGAGAAATTTCAAAGGGTAGCTTATTTTAAAGACTTCAAATATTTAGATTAATTAAACTACAAAGATTTTTAAGAGTTTTTAGTCAATTATTTTTAAGTTGGGATTTCCACAATAAAAAATTAGTATTTTAAAATTTATGTCTTTAAAATTCTTTTTTAAGCCTAAATGGCAAAATTTATATACGAGCAGAGGTGTATAAATATATAGGGTTAAAACCCCTTCGACTTATAAGGTAGGGAAAAATATAAATATTAATAATGCTGAAAATACACTTATCTCGAGTAATTGTCCT # Right flank : CCAAAATCTACCCTTTCTACTTGGTCATCTGGACATGTCATTACTTTGTTAAAATCAGGCCGGTTCGGAATGGAGACTGATAATGTTCATAGTAAAAGTATGACTTGGATTCATCTATTTGTTAAAATCAGACCGGAACGGAAGGAAACGTGTATAAACAACATAAAAATCTTTTTTAAGTTAATTACTTCAATCCTAAAAACCCTCTACCAATTAAATGAGAAATCCTCAAACACTCTGGAAATTTGCTTTTAAGTCTTGTTTTTTTGATAATATTTTTAACAAAATCTTTATCAGTTCCAATATATTGGACGTAAATGCCATCTATTTTTTCAGGCTCTGGAAAGCTTTTTATTAGTTTTATTCTATTATCTGCATCGTCAAAGTGTTTTTTAATAGCTGAAAACATCCTCTTTTTATTTGGATATCTATCAATAACTACAATAACAGGTTTTTTTGTCTCTTCATTAATTCTCCACAAATCTGCTATATTAAATCCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCGTCTCGGTATCTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 9 1343405-1343703 **** Predicted by CRISPRDetect 2.4 *** >NC_013156.1 Methanocaldococcus fervens AG86, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1343405 30 100.0 35 .............................. TTGTGGGATTTAATAACATTGGCAAAAAAAATTAT 1343470 30 100.0 39 .............................. TCTGTATCTGGTTCTATTCTGGCTTTTATAGGTATGTTA 1343539 30 100.0 37 .............................. CTTAGATGGCGGCCTTTCTTTCAGCTCAGCTATTGCC 1343606 30 100.0 38 .............................. TACGTTGAATTATCATAGACTTCAATTGTTATAACGTG 1343674 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 100.0 38 GTTAAAATCAGACCGTCTCGGTATGGAAAT # Left flank : TTCTTAAAGAAAGAGTTTGATGTTGAGGAAGTTATAATTAATGGGGAAGATAAGGCAAATAAAAAGAGGTTTGCTATTCCATTTAAACCAGCTATCTATTTGGAATAAATTACTTTTTATATTATAATTGTATTTATCTCGCTGAAATGATTTTATTTTTAAATAAAGATTTTTTATAACTTATTTTTTGATTTTAAGGATTTTTATTTAATTTCGAAGGGTGGGTTATTTTTAAAATTTTAAGTATTTAGATTAATTAAATTATATGGAATTTTTAAAAGATTTTAGTTAATTATCTTTTAAGGCATAATTTCCACAACAAATAAGTTATATTTTAAAAAATGATTGTTTTAAAATTATTTTTTAAGTCTAAAAAGTAAAATTTATATGGGTAAGAAGGTATATAAATGAATGGGGTTAACCACACTTCGACTTATAAAGTAGCGTAAAGTATATATATTAATAATGCTAAAAATATACTTGTCTAGAATTATCGCCCT # Right flank : TAATTCCCCATGTGTTATGAAAATTTAGATTTAATTTAAAAATTTTAAAGAATGATATTTTTGATGATACTATGTATGTCATTATTGTTTATGATGTAAATGTTGCAAGAGTAAATAAGATAAAAAGCTTTTTAAGAAAGCATTTAAATTGGGTCCAAAATAGTGTATTTGAGGGGGAAGTTACAAAGGCAGAGTTTGAAAGGATAAAAGACGGAATTTTAAGGATTATTGATGAGGATGAAGATTCAGTTATTATCTATAGATTTCCATTGGATTTTGTTCCAAAAAGAGAGATTTTGGGCATTGAAAAGAATCCAATTGATGATATTATTTAAATTTTATTTTATTCATAAAGCTCTAAATAGAGTTTTCCAGATTCAGTTAAATTGAATTCTTTATCAACAAGCCCTAACTCTTGAAGTTTTTTAACTTCTCTACTAACTGTTGCTGGAGATAAGCCGAGATTTTTTGCCGTCTCTCTAACTCCACAACCATTATAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTCTCGGTATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA //