Array 1 8652-10278 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKVM01000049.1 Pelosinus fermentans A11 ctg22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 8652 33 100.0 34 ................................. GTGTGTCTTGGGTAAATCGAAATAAACTGTATTC 8719 33 100.0 33 ................................. CACGGTGCAGGAGTAGCTTTGTCTACCCTGTCC 8785 33 100.0 33 ................................. AGCAACTTAGCCTTAACAGTAAAAGGCACATAT 8851 33 100.0 32 ................................. TGCTAAAGGGGGTTAGTGATTGCCTAAACAAT 8916 33 100.0 33 ................................. TATGATTGGTAAACAGAATGTATCAGCTACTAA 8982 33 100.0 34 ................................. TTTAACTCGGCAATCTGCTTTGCTACTGAATCAA 9049 33 100.0 33 ................................. GATCACCTCTTTGTATCTGCCACAAGTACAATT 9115 33 100.0 33 ................................. AGCAAGCTCACTATTTGTAAACTGATCCAGCTT 9181 33 100.0 34 ................................. ATTCTTCCAACACCAAACCCGACTAATTTATTTC 9248 33 100.0 33 ................................. TCATTGGCAGGTATCATTAACGAATAGTCGCCA 9314 33 100.0 34 ................................. TCTTTGTGACGCTACATCGGCGAGTACTCCAACA 9381 33 100.0 33 ................................. TACTGTCGTTACTAGCCTAGTTTCTTTGGCTGG 9447 33 100.0 35 ................................. CATCTTTTTACTTAACCAGCTAAACATCCTCAACA 9515 33 100.0 33 ................................. ATCATCAGCGGGTTTACTACGCTCCCAAATAAA 9581 33 100.0 36 ................................. AATCACGGTTACATGTGTCATTTTGCGTTGCTTAAC 9650 33 100.0 33 ................................. ATCGTCTGGGTTATCAGTGCTTTGGCAGCAATC 9716 33 100.0 35 ................................. AATCGTTATCCATTAAAGAGCAAATATTGGATGAT 9784 33 100.0 33 ................................. CATTATGCTTGTCCCTCCTGTTTCACGCCTTGT 9850 33 100.0 33 ................................. GCAGTACTGCGTGACACAGATTGCCCAGCGGTA 9916 33 100.0 33 ................................. AATGACGTTATCGCTGTTTGTAAAGGTTTAACT 9982 33 100.0 36 ................................. CGGTAGTTATGGCTACTGGATTTATCGCGTAGTCTC 10051 33 100.0 32 ................................. TTGACGATGGACCGCAAATAAAACATTATTTC 10116 33 100.0 33 ................................. TTTGACCACTTAGCCGCCTTTAGTTTCATGGTG 10182 32 97.0 33 ...............-................. GCTTTCATGATAGCCGCAATCATTGGACTCTGA 10247 32 87.9 0 ...............-.....A.........CT | ========== ====== ====== ====== ================================= ==================================== ================== 25 33 99.4 34 GTCACGCCTTGCGTATGGCGTGTGGATTGAAAC # Left flank : ACAGGTTCACTTTCCTAAAGTTCAACTTGAAAAAGGTACAGCAGCCTATGTGCTTCATCGTTCGACGGAAAAAGTAGGACAATTCTTCTTTTATGAAAAATACCAGGATCAGCAAGCGTTAGATTATCATGGGTCTACGCCTTACTTAAAAGAATTATTCAGCAGTATTGCTGATCTGCTTCTCGAAAAACCAGAAGTTAAACTATATGAAGAAGTGGCAGCCATTTCCCGATAAGTAACGTAGAATAGTGAAAAGTTCCTGCAAAGTAATGTTCTTTGCAGGAACTTTGTCTTTTAATGGGAAATAATGAGGTAATATGGGAAAGTCTCCTAATGCGAACCCTAAGTGCTCATCATTTTTGTAGGAGATTCGCAAACCAGATATAAGAAGGCGTTTGACCACTTCTTATATCAAAATTCTCTATTTAAATAAAGCACATTTCGGGGTTCGCAAAATCATAGGATTCAACCCAGGTAGTTATTGCATCTCACAATCGCCA # Right flank : TCAATCAATAGCACATTGTTATTGAGATCTGAAAATAGGTAAAAAAAGAACCTTCAGTGTAAACTGAAAGGCTCCTATATTTAGTCATAATGTCCTCTGCATTGTACGATTTCAATGACTTCATCCTCAACCTTATAGATGAGTCGATGTTCAGTGGTAATTCTTCTGCTCCAGTAGCCACTCAAATCATTTTTAAGGGGCTCGGGTTTTCCTATCCCTTCATTGTAGTTACGGTCAATATCCTTAAGGAGTTCATTGATCTTCTTAAGAACCTTTTTATCAGTAGACTGCCAGTAAAGGTAATCATCCCATGCGTTATCCGAGAAAATCTTATTCATCCTCTATAAGTTCCCTGATTTTACCTTTACCAGCCTTTAATTGGGCAATGGACTCCAGAAGTCTGTCATAGGTCTTCTTATTGCTTCTGATATAAAGATTTTCCATAAGATTGTTATACTCATCCTCTGAGATCATAACGACATTTCCACCTTGTTTGCGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCTTGCGTATGGCGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 2 22018-24624 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKVM01000049.1 Pelosinus fermentans A11 ctg22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 22018 32 100.0 35 ................................ AGCGGAAGCAACTTACCAAATAACGGAGACACAGC 22085 32 100.0 35 ................................ TTGGGATAGTAACGTCTCTAGAAGCTCCGCTTTAC 22152 32 100.0 34 ................................ ATTTAGACATCTAAGTGGCAGCTATTTATTAAAG 22218 32 100.0 35 ................................ CGAATATCTTTGTCTGCCACTGCTAATGCTAAGGC 22285 32 100.0 35 ................................ TATAGTAACTCCGTTTGTTGTCTCTGAGCTTCCTG 22352 32 100.0 36 ................................ CATATTATGGGGAGCCTTGAATTTCTTTTGCATAGC 22420 32 100.0 33 ................................ GCTCCGCTGTTTGATCCTGTGTCATTCGAGCTG 22485 32 100.0 34 ................................ TATGATTGGCGCTAACTCGGAGGCTTGGTATGCT 22551 32 100.0 33 ................................ AAATAGCCAGTATACAGTCCGTTATCAGACGTA 22616 32 100.0 34 ................................ ATCTGTAAAGCTACCGTTGTCATGGAGTGTCGTA 22682 32 100.0 34 ................................ TAAGTCCTCTCATGCCAATACCAATATGCCTGAG 22748 32 100.0 34 ................................ TAGAGCTAGACATTGTTCTATCAAACATTTCTTT 22814 32 100.0 35 ................................ AATTCACCAGTGCCGGCTTCAGCATCATTAACTTC 22881 32 100.0 36 ................................ ATCGTCTATGAAATCAAACAACGTAGGTGTATCAAT 22949 32 100.0 33 ................................ TGTCTGATGTGTTGACCATGCGTTATTTCTTAG 23014 32 100.0 32 ................................ TTATTGTTTTGGCTAACACCGTTGGCGTATTG 23078 32 100.0 33 ................................ TGTTCACCAGTTAACTGGTCTATGTATTCTTCG 23143 32 100.0 36 ................................ ATCATCTGCATTGTCAATAAATGCAGTTTCAACCAG 23211 32 100.0 33 ................................ ATTAGAAGTTGCTTTTTGGATAGCTTTGCAACT 23276 32 100.0 34 ................................ CCTTAGTAATTGCCAAGGTGACGGTGTGAGCTTC 23342 32 100.0 33 ................................ ACAGAAGAAGAAAAGGAAATGCTTGAAAACTGG 23407 32 100.0 33 ................................ TCAAATCTGCACCTCTAAAGATATAAGTCTTGC 23472 32 100.0 34 ................................ AATGTCACATGAGTAACCTCTATAATTCGCCATT 23538 32 100.0 34 ................................ ATTGTTCGTCACTCCGTTTACCTATGATACACAT 23604 32 100.0 34 ................................ CATTTTGATCATTTATTAGGGGCTAAACCCCATT 23670 32 100.0 35 ................................ TTATTAACTCTGTAGCCAACCATATTTGTTTTACC 23737 32 100.0 34 ................................ TGCCAAAAACGAGCCGAATTGCTGGCAGGTGAAC 23803 32 100.0 35 ................................ TCACCAAGACTAGCTTTGCCAATAGCCTGTATACT 23870 32 100.0 32 ................................ ACGTATTTGAAATTCAAGGTTTAGACCACCAA 23934 32 100.0 33 ................................ CAACTGAGTTGATGCTGTTTTTAAGTCCTGTTT 23999 32 100.0 32 ................................ ACGTATCTTAAAGCGATTGAAGCTCTACTACG 24063 32 100.0 33 ................................ AATTAAACAATATTTTATAGAGCGATTTATTAA 24128 32 100.0 33 ................................ AGATCTTCGGCAGCCAGTATAAAAGAGGAGTTG 24193 32 100.0 35 ................................ ATAGGTTTTATTTGTGACTACATCCATTCGTGCAA 24260 32 100.0 34 ................................ ATAATTAAAGATAATGAAAAACCTGAGCATAAGC 24326 32 100.0 35 ................................ ATGTAAAACTTGTTAGGGGTTACATTTCCTTTATT 24393 32 100.0 34 ................................ CCCATTGTAAGGTATTTCCTTGTGCCACTTTTCT 24459 32 100.0 35 ................................ GGATTATGGACCAATATGAAAGTTAACTATCAATC 24526 32 100.0 35 ................................ CGTTTTTCGGGTTTCAACATCAACCCTCTGGTAGA 24593 32 90.6 0 ......................A...CA.... | ========== ====== ====== ====== ================================ ==================================== ================== 40 32 99.8 34 GTCACGCCTTGCGTAGGCGTGTGGATTGAAAC # Left flank : TTTAGAAGATTATCCGCCATTTTTCTGGAAATGAGGGTTTGGCAATGATGGTATTAATTACTTATGATGTAAGTGTGACCACCGATTCGGGAAAGAAACGTCTTCGCAGAGTAGCGAAACAATGTGTAAATTATGGTCAACGTGTTCAAAACTCAGTTTTTGAATGTTTACTTGACCCAGCGCAGTTTGCAGAGTTAAAGCATCGCTTGGAAAGCATAATCAATCATGAGACGGATAGCCTGCGATATTATTTCTTAGGAAGCAACTGGAAAAATCGCGTAGAGCATGTGGGTGCGAAATCAGGATATGATCCAGAAGGAGTTCTGATGATCTAATGCGAACCCTAAGTGCTCATCGTTTTCCTGGGGCATTCGCAGTCTAGAAGGTACAAGCCTTCTTGATGTTTATATAAGGAAAATCTTTTTAAAAATCGATATAATTTTCTAGTTCGCGAAATCATGTGTTTTGACCCATGGTTTTCTTATATCCCACAATTGCCA # Right flank : CTGAGGTGGAATCTCATCCTATCTCCGAATGCTTGGTGTTTATCCAAAGCAGTTGGAGTTATAGAAGAAGAAATGGGAACATACTGTATGGAATGATTAAAGAGGCAAAGAGGAGCTTTGTGAGTACCATTATATTGCCGAGGGAGAAGTCTTAAAAATAAAAGATACATTATGTGTCAAAGAACAAAAAACTTACAAAGTTGAGGGATCATAATGATATTTGTAAAACATACCCCTAATCATGCAGGTGTGGCTATATATGGTGATTGTTTAGATTTTGAGGAACTTTATGGTGCACTGCATGATGTTGTTGGTAAGGAGAATCAATATGTTGCCTACCAAGGTGTTCGTATAAGAGTGTTAGGGTTCTGCTATGAGCTGCGCCATGCTTTAATGGGGAATCGGGAATTTGAATTTGTTGAGAATGGTATGGATGAGAATCGGATGAAAGAGTTAGCAATGATTACTCCTAAGAAAAATATATATATAGGCACTCATAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCTTGCGTAGGCGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //