Array 1 273846-273635 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWOV010000002.1 Klebsiella pneumoniae strain E5 isolate E5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 273845 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 273784 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 273723 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 273662 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TAGGGTCTTCCCCACGCACGTGGGGGTGTTTCCATTCGAGTCAGTAAAAGCGTCTAGTGCTGACGGTCTTCCCCACGCACGTGGGGGTGTTTCCGCTGTATGCCCCCCATCCTTCGCAAGCACTACGTCTTCCCCACGCACGTGGGGGTGTTTCCGATGACAACTTTGCCTACTTCGCTGCGCTGGCGTCTTCCCCACGCACGTGGGGGTGTTTCTTCCTCTTCTTCCTGACAATCAGCGCAGCGCTGGTCTTCCCCACGCACGTGGGGGTGTTTCTGCGGGTGGATGACAATAACGCCTGGCGCGCCGGTCTTCCCCACGCACGTGGGGGTGTTTCCCTGTTAAGGATGACGCGGGGAAATGGGTTATCGTCTTCCCCACGCACGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACGTGGGGGTGTTTCTCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 275779-274009 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWOV010000002.1 Klebsiella pneumoniae strain E5 isolate E5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================== ================== 275778 28 100.0 33 ............................ TGTAGTCAACTATCTCTGGATCAGGCGTGCACA 275717 28 100.0 33 ............................ CTATCAATGCTTACGTTTCGTGGTTTGAGGATG 275656 28 100.0 33 ............................ TACCTGCTCATCATTACGCTTGTTAAAGCGACC 275595 28 100.0 33 ............................ TCTTATTACGCTTGGGGTAAAGTAGCTTTTCCA 275534 28 100.0 67 ............................ TTTTCTCGTTAGCGACTATGCAGGAAACATAGAGTCTTCCCCACGCACGTGGNNNNNNNNNNNNNNN 275439 28 67.9 33 NNNNNNNNN................... TGGTATATCTTTCCACGCCGAATCTATCAGTGT 275378 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 275317 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 275256 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 275195 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 275134 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 275073 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 275012 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 274951 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 274890 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 274829 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 274768 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 274707 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 274646 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 274585 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 274524 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 274463 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 274402 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 274341 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 274280 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 274219 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 274158 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 274097 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 274036 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================================================== ================== 29 28 98.9 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CCTGTTAAGGATGACGCGGGGAAATGGGTTATCGTCTTCCCCACGCACGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACGTGGGGGTGTTTCTCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAGGTCTTCCCCACGCACGTGGGGGTGTTTCTGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGCGTCTTCCCCACGCACGTGGGGGTGTTTCCGGCTGCGTTATCCGGCAGCACGAACTGGACCTGTCTTCCCCACGCACGTGGGGGTGTTTCTGACCTTAGAGGCTTCACTCAGTGCCACTTTTTGTCTTCCCCACGCACGTGGGGGTGTTTCTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 284988-284532 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWOV010000002.1 Klebsiella pneumoniae strain E5 isolate E5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 284987 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 284926 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 284865 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 284804 28 100.0 34 ............................ CATCGTGCAGAGTCACAACCTGACGGGATTATCG 284742 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 284681 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 284620 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 284559 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================== ================== 8 28 96.9 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //