Array 1 1003282-1004408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057210.1 Escherichia fergusonii strain RHB33-C07 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1003282 29 100.0 32 ............................. AATTGCCGACCCACAAAGAGTGCGCAGTACGC 1003343 29 100.0 32 ............................. ATCCCTCAGTTCATCACCTTCAAGAAGGAAAT 1003404 29 100.0 32 ............................. CAGCGGCCTCAACGCTTAAACCGCACCGCTTA 1003465 29 100.0 32 ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 1003526 29 100.0 32 ............................. TTGCAAAGTGGAACTCGGCGCAGAACGTTATG 1003587 29 100.0 32 ............................. CCGAGGAAATCGACGCGCTGGCCCGGTCCGCG 1003648 29 100.0 32 ............................. GCTGAACCAATTGCCAAACCCTCACAGGATCC 1003709 29 100.0 32 ............................. TATTAAAGGACGATGTGCGCGGGCTATTTAAT 1003770 29 100.0 32 ............................. CCAGCCGAACGCAAACACGCATACGCTAAAAT 1003831 29 100.0 32 ............................. CTACAAAAAAACCATCAGGCAATTCAACGGCA 1003892 29 100.0 32 ............................. CACAAAACGGATCTTTCTATATGTCCAGTAAT 1003953 29 100.0 32 ............................. GCCTCTAACGCAGATCGCGTTTATTGCCGGGA 1004014 29 100.0 32 ............................. GCTGAAAAATTGGGGCATGAACTGGATGTTGC 1004075 29 100.0 32 ............................. ACGGCGCATTTTTGAGTTCCGTGTACTGCTCG 1004136 29 100.0 32 ............................. GCCTTGGATACGGGCAGGGCGTCCGACTGGTC 1004197 29 100.0 32 ............................. AAATTTCATAACGTCAATTTCGACGGCTGCGG 1004258 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 1004319 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 1004380 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1019367-1021286 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057210.1 Escherichia fergusonii strain RHB33-C07 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1019367 29 100.0 32 ............................. ATTCTCTATGATTCGTAAATTAATTATTGATA 1019428 29 100.0 32 ............................. TCATACGTTTGCCCGGAAACCGGATCAACAGT 1019489 29 100.0 32 ............................. AAATTGACCCTCGGGTGATTGTCGTGGGGATC 1019550 29 100.0 32 ............................. CGCTTCCTAAATTCAGGAAGCAATGTTTTATT 1019611 29 100.0 32 ............................. TTGGACCTGGCTGATTCAGTCTCTACGTTATC 1019672 29 100.0 32 ............................. CGGAGAGAGGGCTGGAATAGTGGTCGGAGTGT 1019733 29 100.0 32 ............................. ACGTGTATTCCCCGATTTCTTTAGTCGGTGTG 1019794 29 100.0 32 ............................. AATTTTCACGGGGATCGGGATTGTGGCGCAGA 1019855 29 100.0 32 ............................. CAACGTAACAAATTGATAATATTAAAAAACAC 1019916 29 100.0 32 ............................. AGAGATATCAAAATGCCTACAATCCGCCGCAA 1019977 29 100.0 32 ............................. GGCTAAAGGCGGCGAATTCGGCTGGGTTTTTG 1020038 29 96.6 32 ............................T TTGCCAGCGTGCCGTGATAACATCGGTACCGC 1020099 29 100.0 32 ............................. GTCACGATAGCTGCGCAAGTTCTTCTCGCCAG 1020160 29 100.0 32 ............................. ACGCTCTCTACAGCATTTCGCCGCCAGTTATT 1020221 29 100.0 32 ............................. CAATTAGAAAACGCAATGACCGGCGCGCCCAT 1020282 29 100.0 32 ............................. CAGCGCTTGTAGTTGCCGATAAAATCACTGAA 1020343 29 100.0 32 ............................. AAAAAACGCTGGCTACAACAGTGTCGGTAACG 1020404 29 100.0 33 ............................. TACCAGAATGGAATGCCGTTAAAGTCGTAATGC 1020466 29 100.0 32 ............................. TCCATGTACCCAACCGCGCTCACTGAACAGGC 1020527 29 100.0 32 ............................. ATTTGAAATATCTGGCAGACAATACCGAATAT 1020588 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 1020649 29 100.0 32 ............................. TACCCCGAAATTAATGGCGATGGGGCGTTTAC 1020710 29 100.0 32 ............................. ACATTGCTAACTACAGGCACCGTTTAAACAGA 1020771 29 100.0 32 ............................. TCGTGACCGGCAGGGATTCCCCTTGCCTGGAG 1020832 29 100.0 32 ............................. GTGATTCTCCGTCGTGTGCAATTATTGACGAA 1020893 29 100.0 32 ............................. CCCGTGATCATTTCAGTAAGAAGGTCACGCCG 1020954 29 100.0 32 ............................. CGTGAGAAAGGGGGTCGATACATATATCTCGT 1021015 29 100.0 32 ............................. TGATCGCCGAAATGATTGATTTTTCTTATAAC 1021076 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 1021137 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 1021198 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 1021259 28 82.8 0 ............T.........-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //