Array 1 259-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSIZ01000101.1 Enterobacter cloacae strain 451 451_S79_R1_contig_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 258 28 100.0 32 ............................ TGTGGCGTTTACGCACCTGCGGCGAAGGTTAT 198 28 100.0 33 ............................ ATGAACACACGAGAAAAAATACTCATCCATCTT 137 28 100.0 32 ............................ AGCGACCAAACGCTATTATGGATCCAGCTCGT 77 28 100.0 32 ............................ TTGCTGACAGCGTAGATTGGCGCACACCCCTT 17 17 60.7 0 .................----------- | ========== ====== ====== ====== ============================ ================================= ================== 5 28 92.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACAGGCAGCTTAGAAAATCGAGAACGCCAAGATTGGCAACTACATCC # Right flank : G # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 139-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSIZ01000064.1 Enterobacter cloacae strain 451 451_S79_R1_contig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 138 28 100.0 32 ............................ CTAAGATATCCTCGGCATTAACGCCGACATAA 78 28 100.0 32 ............................ GCTACAACACCGCCACGTTCGACATGCTTTAC 18 18 64.3 0 ..................---------- | ========== ====== ====== ====== ============================ ================================ ================== 3 28 88.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGGCTACGCGTTCGCTCTCATCCGGCGTCAGCGTCCTGCCTGCGCTTTTGCGGCGTGCCACGTTACGTTCGTTAATCCCGGTAACGCGCAAAATGTCCGCTTTCGACATGGCCGTCCATTCATGAATATTGTCGAGCACGCTGACGGGCAATCCCTGGTTGAGAAATTCTATCAGCCGCATACCTCTGTTCGCGGGTAAACCGGCGTAGCGCCAAAGTGCGTTATCAGCAGGTTTCTTGGCGGGGATCCAGGTTCTCATGTTACCTCCTGATTAATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGATGGAGTGGAATGGGGATTTTTTGTGCTGGGTGGTTTGTGAGAAGAAGATGTTTTAACCCTAATTTTTAACGTTTGTGTAATTCATTGATTTTAAATAAGTGTTTTTGGTGGATAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : C # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 261-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSIZ01000065.1 Enterobacter cloacae strain 451 451_S79_R1_contig_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 260 28 100.0 32 ............................ TGACTTTCACGCGCACTAAAGTGTCTGTTGGA 200 28 100.0 33 ............................ ATGATGAGTAGCCACTCCATCTTTTTCTCCTTT 139 28 100.0 32 ............................ TTGACCCTAAGCAGCAAGACGGCGGCGACGCC 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACAGGCAGCTTAGAAAAGGTCGGTAGCGTCATTCAGATGCCCGACAT # Right flank : AACGCCGGCCACACCAAACCACAGATACATATCGTGCACTGCCGTACAGGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //