Array 1 512-1933 **** Predicted by CRISPRDetect 2.4 ***
>NZ_FFED01000013.1 Neisseria meningitidis strain 2842STDY5881519, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ==================================== ============================== ==================
512 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG
578 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT
644 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA
710 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG
776 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA
842 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT
908 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA
974 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT
1040 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC
1106 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA
1172 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA
1238 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG
1304 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG
1370 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG
1436 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG
1502 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT
1568 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC
1634 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG
1700 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT
1766 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG
1832 36 100.0 30 .................................... CAGGGGATAGGCGGGACGGCCGCGGTGGTC
1898 36 100.0 0 .................................... |
========== ====== ====== ====== ==================================== ============================== ==================
22 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT]
# Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37
# Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [4.5,0.68 Confidence: HIGH]
# Array family : II-C [Matched known repeat from this family],
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