Array 1 89-585 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZU01000122.1 Faecalicatena contorta strain 2789STDY5834876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 89 32 96.9 34 C............................... GCAAAACTGGATATCATCCACATAGTCGTAACAG 155 32 100.0 36 ................................ AGAAAATGGGTCTTGTAACGACCCCATTGGCGTATC 223 32 100.0 35 ................................ CGTACAGGTTGTTTAAATACAATTTTGCTAACTCT 290 32 100.0 33 ................................ AAAATTAGGTGCAACAATGGATATTTCCATAAA 355 32 100.0 33 ................................ TTCCATGAAATCCATTGCGGGCAATGCGAAATC 420 32 100.0 36 ................................ GATGCAACGGATAGTACAGGTGTGATTAGAGGTACA 488 32 100.0 34 ................................ ACCGGATAGCGCGGCAAGCCTGATCCGGAAGATG 554 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 99.6 35 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : CGGAGCAAGTCTAAAACGACCAATGTGTAGACCTGGCCGCCGGAAACGGCGGTCAAAAAATGAGCCAGTACTCATGGTTTACCGTATAC # Right flank : TCCGGAATCTCATTACGGTCTATACGTATACGGTAAACCATGAGTACTGGCTCATTTTTTGACCGCCGTTTCCGGCGGCCAGGTCTACACATTGGTCGTTTTAGACT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 172843-171468 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZU01000002.1 Faecalicatena contorta strain 2789STDY5834876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 172842 33 100.0 33 ................................. CATAAGCGATTGTGCCAGAAGGTGATGCAATTG 172776 33 100.0 34 ................................. TACCAGACTTACGGACTCAGGGTGCTGTGCGTCC 172709 33 100.0 34 ................................. CAGCGCAAACATTGATACTGTCATATCTCTGGAC 172642 33 100.0 34 ................................. ACATGCCCTCATTGTGAATACGATGTGGGAATGC 172575 33 100.0 35 ................................. CTATCCGTTCTGCCGTTTCTGGGAAACCCTCGCAC 172507 33 100.0 35 ................................. TTTTGCACCCTGTCTTCTTGCATTTAGCCCAATCT 172439 33 100.0 34 ................................. CTCCTTTACTAAATGTCAGTTTAACCCACTATTT 172372 33 97.0 34 .C............................... TCTTTTTCTGTAAAGCTCTCAGTCCCTGTATCCT 172305 33 100.0 35 ................................. CGCAAAAATACATGTTAGGTACTAGCCCAGATGCA 172237 33 100.0 35 ................................. TCGTAACCTCTCATCGTTGGTAAAATCATTATCGC 172169 33 100.0 34 ................................. CTCCTAAATGTTAATTTATATTGTATCTGCGATC 172102 33 100.0 33 ................................. AAGAAAAAGACAAGCAGAAGCGTAAGTAAATGG 172036 33 100.0 34 ................................. AGAATGCAGAGGCATTGGTACGTGGTTTTGACAA 171969 33 100.0 33 ................................. AGAATAAAATCGAAACTCCATCGCTTACGGGAA 171903 33 100.0 34 ................................. TCAAAATGTTTATCTTAATGATAATGAAACTTTT 171836 33 100.0 34 ................................. CTCGCATACTCATCATCTTTTGCTTTCAGGTCAT 171769 33 100.0 33 ................................. TATTGTCGTACAGGATGGATGCTTCCTGATACG 171703 33 100.0 34 ................................. AGCAATCCTGGAATCCCGTATTTTGAAATCATTG 171636 33 100.0 35 ................................. TCTCGTTTGATCCACACGTCTCCTGTCCGGAAATC 171568 33 100.0 35 ................................. AAAGTAGCATTGATTACCTAAATGATAGAGAGTTT 171500 33 93.9 0 ....................C..A......... | ========== ====== ====== ====== ================================= =================================== ================== 21 33 99.6 34 GTCACCGCTTGCGTATGCGGTGTGGATTGAAAT # Left flank : GTTTGAAGAAGGCGAAAAATTGATTTTCTTTGATGCCTATCCCCAGAGTTTTTCTATATCTTTAGATGCACAAAGTCCGCATTATAAAGACTATTACGAGCGGCAGGCTGCACCGACTGATAATCAAAAGGTAGTGCCCATTACATTTATATGTATAAAAGATGTTACATTTAAATTGCATATCGCCTGTCAGAATACAAAATTGTGGAAACAGGAAAAAACACGGATAGATGAAGCAGTAAAATGTATGGTGGAAATATATGGATTAGGGGCTAAAACAGCATTGGGGTATGGCGTAGGAGAAATGCAGTAAGTGTAAAAACAATAAAGTGCGAATCGGTAGCGGACAGGAATTTCCCGGGAGATTCGCACCTTAAAAATAAGGAGGGGAAGGAGATATAGACGGAAAAAATAGAAATTTAATGAGATGAATCAATTGATTTTGTGGGAAATGTATATTATTATGATCTTGAAGTAAATCAAATTTGTTTATTTTTGCT # Right flank : AAATAAGATTACCAGCTAACCCACCGGGAAAAGCCATAGTCACCATCCTAGTACCTCGAATAATAATTAATTTGCTGTTAAACTAACCTAAATTTTCGATGTACTAAGTATGGTTTAAAATTTAAAGAAAATAGCAATTATTAAGGACAAAATTATGTTAAAAGCAATTATTATTGGAAGTCCTGGTGCAGGAAAAAGTACATTTGCCCGGAGGCTTAGAAATTTGACAGGATTACCGCTATATTACCTGGATATGCTGTGGCATAAGCCGGATCAAACAAATATCACAAGAGAAGAGTTTGATACGCTGTTGAATGACATTATAAAAAAGGATAGCTGGATTATTGACGGTAATTATCAGAGAACACTTGAAGCCCGTCTGAAAGCATGCGACACCGTTTTTCTAATGGATTATCCGCTGGAAATCTGCCTTTCAGGTGCAGAATCCCGCATAGGAAAAAAACGTGAGGATATGCCATGGGTCGAATCGGAATTTGATG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCGCTTGCGTATGCGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACCGCTTGCGTATGCGGTGTGGATCGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 51055-50239 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZU01000024.1 Faecalicatena contorta strain 2789STDY5834876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 51054 31 100.0 35 ............................... ATCTTGCTTATTACATGTACTGCATTGCTTATACT 50988 31 100.0 35 ............................... GAATAACTTTTGCAATAGATGTGGTCAGGCGTTGA 50922 31 100.0 34 ............................... CAAAGGGCTATGGAGCGAATAAAAAGGTGTTGTG 50857 31 100.0 35 ............................... CCGCTTTTTCTTTTCAAGTAGCTCCAGTATCTCTT 50791 31 100.0 35 ............................... ATATTGACGCAGCCTATGACGGCGCGGACGGTACT 50725 31 100.0 35 ............................... CGTCATGTGTTTCTCCTTTTTTGATATGCAGCTCT 50659 31 100.0 34 ............................... ACCAGAAAGGAGAGAGGGTTCGGAAACCGTATTG 50594 31 100.0 34 ............................... TCTCCTACTCTTAAGATGCAGGGCTCTCTTCCAA 50529 31 100.0 33 ............................... ATCATCGTCAGCTTCCCAACTGTCACAATTTTC 50465 31 100.0 36 ............................... GCGTCCTTCAGTCTTGCGAAAGAGGGACTTGACATC 50398 31 100.0 34 ............................... CATTAATAACTGACTATTAGATTTTGAATCATTT 50333 31 96.8 33 ....................C.......... CTGCAGGTCCTCCATCGTACAGCCATGAAACCC 50269 31 93.5 0 ..........................A...C | ========== ====== ====== ====== =============================== ==================================== ================== 13 31 99.3 34 GTCGCTCCCGTGTGGGGGCGTGGATTGAAAT # Left flank : AAAATAATGTGATTTTAGTTGGCGGTTATAAGGGATTACTCCATTCCATATTGTTGGGGCATAATAGAAGTGAGCTGGCAGGAGGCTTATTTATTGATCCTGAGACATTGCTGCCCCATGGGCTTGTAAGAGTCAAGGAGGTTATTTCGGTGTAACTTATTAGGTTTATTACAATTCTATTAAGAAGACTGGAAGCCAGAGTATTATCTGCAATTACAATGCCTTTTATTGATAAGTTGCAATGTATATTATAAAGAAAGCGTTAGAAGCGGGATATTGATAATTATGTTGACGATAGGCAATGGAGGAAGTATAGTAAAAATATCAAGTGCGAATGTCAAGTAAACATAATTTCCTAGGGAGATTCGCACCTGGATATTTGTGGAATTAGGTACGTTTTTTAGTGGTTTTGAGAAGACAGGCTTATTTTAAAAGAATGGTGTTGGATCAATTGTCTGAGAAAGGCGAGAAAATTGGTGATTAAATTGTGCAATATTGCT # Right flank : CAATTACAAAATACGAGGGCCCAAAGAAAGGCAGAAGATATGACAAATGAATTTTACAAATACGAGCTCTCAGAAGAAATTTTAGAGTCATTAAATGGCTTAGGCTACAATAAACCTACGAGTATACAGCAAAAAGTTATTTTGCCAATGTTAGCGGGGAAAAACGTAGTTGTGAAAGCCCCTACCGGCAGTGGCAAAACGGCAGCATTTGCCATACCAATATGCGAAAGTATCAGCTGGGAAGAAAACGCACCGCAAGCACTAATTCTTGAACCGACCAGGGAACTTGCAGTCCAGGTCAGCGAGGAACTGTTTTATATCGGAAGAAAAAAGCGGCTGAAGGTTCCGGCGCTATTCGGTGGATTCCCGATCGACAAGCAAATCCAGACCTTGCGGCAGAAGACTCATATCGTGACAGGAACACCGGGCCGTATTATGGATCATCTGGGCAGGGAAAGTCTGAAGCTGGAAATGGTGAAATGGCTGGTAATAGATGAAGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCGTGTGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 58931-57855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZU01000024.1 Faecalicatena contorta strain 2789STDY5834876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 58930 31 100.0 35 ............................... CTCCGATGTGGTGTCGACCTCGTTTTGCCCGATCG 58864 31 100.0 35 ............................... CCATTTCTACAACCGCATAATTGCCCACATCCGTT 58798 31 100.0 35 ............................... CCTTAAGGTATACACCCTCGAAGTTACCTGTATCT 58732 31 100.0 35 ............................... CACCATCCGGTCGATATGGCTGCCGACGCTGGCCA 58666 31 100.0 34 ............................... TTGTGGGCTGAGGAGTAACTCAAGAATAAAAATG 58601 31 100.0 36 ............................... ACCCGGGTTGTTTGATCCGCCATTACCTTTGATCTC 58534 31 100.0 35 ............................... CATTTTAATGTTATGCCATTGATTCCGTTTGCGAT 58468 31 100.0 35 ............................... TCCTAACAGAACTGCCCTTTGTGACGCAGTCCTAA 58402 31 100.0 35 ............................... AATATCTGCGCAGGGAGGGAACGATCGCTGTTCCG 58336 31 100.0 33 ............................... GAAACAAGTGCGATACAAGTCCTGAAAACAGAT 58272 31 100.0 34 ............................... AATGTTACGCGAAATGAATTAGGCGGCACATACG 58207 31 100.0 33 ............................... AACGAGTCAGTCCTTGGTGCTGGGTTATCATTT 58143 31 100.0 35 ............................... CACTTTAAAGTGATGCCATTTATTCCATTTGCGAT 58077 31 100.0 34 ............................... CACGTGAAACATTGAAAAAGGAGGATGATTTAGA 58012 31 100.0 33 ............................... TACGACTAATCTGTATGCACTATCCGACACATC 57948 31 100.0 33 ............................... CTGCAGGATGTAGGCCAGCGGGCACTGGTTTTT 57884 30 83.9 0 .....................AA.A-....A | ========== ====== ====== ====== =============================== ==================================== ================== 17 31 99.1 34 GTCGCTCCTTCACGGGAGCGTGGATTGAAAT # Left flank : AAAAGGTGTTCACGGTTACAACCTGTGGTGTCGGGTACCGTAATTATGCAAGTGGTGCGGCAAAACAGATAAAAATAAAAGGAGCGGACTATCTTGGAAACTTTCAATGCCGTGGCTTTGATACATTTGGGGTGTTTGGGAGGATTGGGGGAATAGCGAAGAAGCATCCTGATAGGAAGGATATGGAGAATGCAAGGCAGTTTATGAAGAGAATAATTAAGGTATAAGCGGTATTTCTTTGGGATGAAGCATATCATTGAATTTATTAAAACAAATCGAATCAGGGGAAAAAGCGGCAGATACAGAGCTGTGTGATTAGAGGGGATTAAGTGCGAATGTCAAGTAGACATAAATCCCTTAGGAGATTCGCACCAAAAAAACGTGAAAATTTGAATGATTTGAAGTGAATGCGAAAGGAAAAGCTTGCTTAAAGAGAAGAGAATGGGTATAATTGACTAATAGGAATGAGACGACAAAGGGGATATTTGTGCAATATTGCT # Right flank : ATTAAAGAAACACTTAACTAACATAAATAATGAAAGAAAGGTAAACGTACGGTAAATACGCTAACAGGTTTAGACTATGAGTGAACAGAAATCATTTGATATTAGATATTTACCGCTTAGAATTTCGCTGGTTTCATTAAAACAAGCAGAATTACCGTGTTATCTCGGGTCGACATTACGAGGAGTGATCGGGCAGGCGTTATATAAGGAAGATAGAAAGGCTTACGATTTTCTCTATGCGAATGGTAAGTACTGTGATGGGAAGCAAGATATTGTAAAGCCCTATTTGATAGTTCCACCTGAGGCTTTCGGGACAAAAACGATAATTGAACAGGGAGAACAATTAAAATTCGAATTCATACTTCTTGGAAATGCAGTTAAATATGCCCCTTCATTGTCAAGGGCCTTACAGGATATCTGGCGCTTTGGTTTAGGAGCGCAGCGATATCCTTTTAGTTTATCGCAAATCAATAATAGCCAGGATCAAAGAGTCCTTTGGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 71478-70982 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZU01000027.1 Faecalicatena contorta strain 2789STDY5834876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 71477 32 100.0 34 ................................ CCCCAGAGGTTGGCCACATACTGGCTGATCTCCA 71411 32 100.0 35 ................................ TGACACTTTTGAATCTGTGTAATTATTGGCAGAAT 71344 32 100.0 34 ................................ GATATCTATTTTCAAAGAGAATGAAAACGCCAGT 71278 32 100.0 36 ................................ TATGTTCTCTGATATTTCCGCTAATGGCTTGGTCAC 71210 32 100.0 34 ................................ ATCATATACCAGAGCGTATATATCATTATGAGTT 71144 32 100.0 34 ................................ TGTGCTGCTGCATTCCCGTCATAGTCGGTAGCAT 71078 32 81.2 33 ............A......C.CA.T...C... AAAGACCACCACATTTATCCCTTTTTCAAATAT 71013 32 71.9 0 ...........TA.CA..AC...A.AC..... | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 94.1 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : TTAAAAAACTTGTAGTTTTCTGGAGTTATTATCTCATAGATAGATAAAACTAGCACGGTACTAGTGATTTACCGTATACGTCTATACGGTTCCGGG # Right flank : TTTCAATGTAAAGGGATCTGCATGAAACAGGACTATATAAGAAGCATTTTATTTAATTAGGGCAGTCTTAACAAAAAGAACCGTTTTTTCACTAATGTTCTAATTTAATTAGCGATATTATATATAGATCAATAGATCCTGACATAATGTGTAATAGCAGAGAAATAGACTATTGGATTGAAGATTATAGGAGTAAAGCATTTGAGTGTAATATGCTTACGTTAGAGTATCAGAGTTTTGTTTGTAAAACTATTTGAAAAATAAACAAGAATAGTATACGTAAACGTTCAATAGTGGATGCGTCCAATAAAGAAACTGCTCATAAGGATGGCTACACCCAGTTTTTTATTAAAAGCAAGTGATGCGTCAATAATTGTCAGGCATCATTATATAAATGAAAATAAATTAAGCAGGAGGGCCGTTTTGAAAGAAAGATTAAAACAAGTAATGGCAGCAGAGGCGCATGTCATACAAAAGATGGCGGAGGAGATTGATTACGA # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 1 41150-43241 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZU01000036.1 Faecalicatena contorta strain 2789STDY5834876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 41150 32 100.0 34 ................................ CAAGTATATCCTGGACTTTGTAAAAATCAGAAAG 41216 32 100.0 35 ................................ TTTTATTCGGACTTTGCCGATCCTGCACCAACTAT 41283 32 100.0 35 ................................ AGCCTGGGCGGTGGGTGTAGATTATGGTGGGAACC 41350 32 100.0 35 ................................ CACTTTAATGTTATACCATTGATTCCGTTTGCGAT 41417 32 100.0 33 ................................ TATTTTTTTCAATGCTCAATCTATCAGCAATAA 41482 32 100.0 33 ................................ ATCACAAACGATCATAAGCGGGGTTTTTTGAGC 41547 32 100.0 35 ................................ TTCTTTTCCACCTGGATAAAATATCTGCGCACCTG 41614 32 100.0 34 ................................ CTCCTTAAAAAGCAGGGGCGGTTTTCAGGGAGGA 41680 32 100.0 35 ................................ CACAGAAGACCAAAGAAGAAACATTTGACAAGGAT 41747 32 100.0 34 ................................ AGGTGATATGCCGGGAAGGAAAAATAATGGAAGA 41813 32 100.0 36 ................................ GATTTTTAGCGGATTTGCTTTGACGAATTTGGGGAT 41881 32 100.0 35 ................................ TTTAACAAAACCAAAATTTAGGAGGGATAGATTGA 41948 32 100.0 34 ................................ CGTCACGAAGAACTTTTGAAGCCGCAGAAGCTGC 42014 32 100.0 36 ................................ CGAATTTGTACGAATTAGGAATTGATGAAAAGTATG 42082 32 100.0 34 ................................ GCAAGTCTTGATACTGATAATGGATACATAGCAC 42148 32 100.0 34 ................................ AATATCTGCGCAGGGAGGGAACGATCGCCGTTCC 42214 32 100.0 34 ................................ CTTTGACAGATTACTTGATACCCTGTCTGCTTCT 42280 32 100.0 35 ................................ TGCCGCCTGAGCGGAAACCTTATTAGCCTGCATCC 42347 32 100.0 35 ................................ CACACGATGAATTATCAGAAATATTATCCGACAAC 42414 32 100.0 37 ................................ CACACGATGAATTATCAGAAATATTATCCGACAACGA 42483 32 100.0 33 ................................ TATGTCAAGGCAAATCGGGCTGAACGCAAGAAG 42548 32 100.0 33 ................................ TTAAAGAGCTTGCTATAAATATGTACAAATGGG 42613 32 100.0 34 ................................ CTTACAGAACAAAATATTGGAGGTAATCATATGA 42679 32 100.0 33 ................................ AAAGCGGGGGCAGAAACAGAAGCCCCTGTCTTA 42744 32 100.0 34 ................................ TACCGCCTAAGCGGTTTTCTCCAACGTATATTCA 42810 32 100.0 36 ................................ GTAGTTTGGTGTTTTGTTTGTATGTGACATATTTTA 42878 32 100.0 34 ................................ TCAGCTCAGGAATCCGCAGAAGCCTTCGAATATA 42944 32 100.0 35 ................................ GCCACCCTGATGCTTGCCAGGTGGTTCCCCGCGGT 43011 32 100.0 33 ................................ CATTTGAATTCTATGCTCATACTAACCACCCAA 43076 32 100.0 34 ................................ AGCCTTACTGTCAGGAGCATCTTCTGCCATATGC 43142 32 100.0 36 ................................ AACTTTATCTGCGGCGGGAGTCCGTGCCAGGATTTC 43210 32 96.9 0 ...........T.................... | ========== ====== ====== ====== ================================ ===================================== ================== 32 32 99.9 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : TTCAAATCTTGGATGTCCTGCAACAGTTCTTACTGGCTTAAGCCCTTTGGATTTGATGTATTTATTAAAGTTTGAGTAGGTACCGATATCTGGATCCCTCTCTGAAAGAATGAACTCATACACAGCGCGGATATTCGCACCTCTGATAGAAAGTTTCTGTTTGATGAGATCATAATGTTTATCCAGTTTGCTTGGTTTATCTCGGTGTGCAGCTTTGCCTTCGTATCCGTCATAATACTTTTTGACAGTTCTGCGATCCAGATCATAAAACCGTGCGAGTTCTGAAAAGTTTGGTTTTATATCACTCAATTTGAGGATTTTGAGCTGAGTCTTTAATGCTTCGTTCATGGATAACACCTCCATGAATACGATAGCATGATGACTTGGATTGTACATTTTTATTTTCCATTAAATGTACATTTTTATTTTACCATTTACAATAGTATAAAATTTTAGAAGAATAGCATAATTATTTTACATCTAAATTGTGCAATTTTGCC # Right flank : TGCGCTTACAAAACCATAACCAGCTATCCTTAAGTAAGCGTCAAATATATGGTGTATTTCTTTTCCACTAAAAATTAGTGCTAGAGCTTTTAGACTTTTTGAAGTCTATTCTTAAAAATCTAAAATACGGAAGTCTGATATGGAAGAACGTAAGCGATTGTGTCAATATGCATGTCCTTGCCAGTGCGGGAAGAATGGAAGATTGTGTCGTTAAAGAGATGATGGATTTGTTATTGTAAAAATTTATGTGTTGTAATTGACTTTGTAGTATGAAATGGATATAATATGATTAGAATATTACTACCATTACAAAATCAAGGAGGTGCCGTTATGAATATCCGTCCATCTGCAGCAATACGTCAGAATTACAATGAGATTGCGGAGATGTGTAGAAAAACCGCAGAACCGGTTTTCCTTACTAAAAATGGCGAGGGTGATTTGGTTGTTATGGATATTGAAACCTATAATAGACGGGAAAAAATGCTGAAGCTTCGTGAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 44696-45788 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZU01000036.1 Faecalicatena contorta strain 2789STDY5834876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 44696 32 100.0 33 ................................ GTTAGAAACTATATCTCGAAGATTAGGCCATGA 44761 32 100.0 34 ................................ TCGAAAATATCAGGCTTGCATGGGTAAACTTCTC 44827 32 100.0 33 ................................ GCCTTGAAATCGGAATCTTACGCTCTTTGCATA 44892 32 100.0 37 ................................ CACGACCGTTGCCGGAAGGGGATTTAAGGTAATGACC 44961 32 100.0 35 ................................ CCCGGAATTACACAACTACCGGAAGTACCGGATAC 45028 32 100.0 35 ................................ CCTTATTAATAAAATGGATACGCTTGGGGCAAAGT 45095 32 100.0 35 ................................ CAACTTATAACCTCTGTGTGAGTCACAACATAATC 45162 32 100.0 35 ................................ TGCACAAAAATGAAAGAGTTTTGACGGCAGAAGAG 45229 32 100.0 33 ................................ CAAGATAATCCCTTTTTATCAGCATCAATATAG 45294 32 100.0 33 ................................ TTCGGCATACAAAAAAGACCGCAGCCACTCGTT 45359 32 100.0 34 ................................ AAAAACTTTTCTCAAATACTGCATTACAAATGTT 45425 32 100.0 34 ................................ AGAATAAAATCGAAACCCCATCGCTTACGGGAAA 45491 32 100.0 36 ................................ AAAACAAAATCGAAACCCCATCACTTACGGGAAATA 45559 32 100.0 34 ................................ AGAAAGCTGGCCGATGAAACAAGCCTGACAGAAA 45625 32 100.0 34 ................................ CTTTGATGCCAATAGCTAAGCCTTGCCCAAAAAA 45691 32 100.0 34 ................................ AACTCTAAATCAATTATATATCAGTCATTAATTG 45757 32 96.9 0 ..............A................. | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 99.8 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : GGCAGGTGACGTTTTTTCGTCAAACAGAAGTTCCCTATATTGACTGATTACAGCTTGATATAGGGACCTTTTTAAATTTTCATATGGTTTATGAATTAAAAGGTTGTTTTGATGAATAAAAACAGATGGACAGAGCTGTGTGCAAATTATAGGTATTTATAGGTGTATTTTTCGGCGTAACGGCTACGGGGCTGAAGGCTCTGTCATAAAGTTTGTTTATATTTTTCGGCTCCATCAACATTATCTTATTTTGTCAAGGCACTGAGGTTTACCTACTTGGGATGTGAGTAAATGGTAAAATTATTATACGAATTATAAAGTGCGAATGCTAAGTGGACATGAATCTACTGGGAGATTCGCACCAAATAAAAGTATAAATTGTAATATAAAATACAAAAAAATGGGGATTTGTGCGAAAAGAATTGTAATATTTAAGAGAATGGTATAAAATTTTAGGGGAAAAGCATAATTCTCTTATGCATAAATTGTGTGATTTTGCT # Right flank : TTGACCTTTATACTGCAAAGCACAATACTGGACCACGCCACTCCCTGCTCAGCAATAAGGTACAAGATGCCGATATGAAGGCACAAGTTGAGCCATGATAAGAAAAGGAGATCTTCTTTACAGTACTAGCTTTGGATTTATTATGTTCACTATGTTAGAAAAAAGGAGGAACTCAATGAGATATTTAGCGCATATTGCAGAAGATTCAGGAGAACAAACGTTAAAGGAGCACTTGACAAATGTAGCCGATTTATCAGCAGAATTTGCAAAGGCCTTTGGCTGCTATGATTGGGGCTATTGTTGTGGCATGCTGCATGATATTGGAAAATATTCCAAGGAATTTCAGCAACGTTTGGCAGGAAGCGATATACGTGTTGACCATTCTACCGCTGGGGCAAAATTATGCTATGAAATAGGCGGCATGTATGGCTTTCTTAGTTACTGTATAGCGGGGCATCATGCAGGCTTGCCAGATACGGGAGAGGACTCGAATACAAGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 55715-57396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZU01000036.1 Faecalicatena contorta strain 2789STDY5834876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 55715 32 100.0 33 ................................ ACCCACAACTGCTACTGTTGCAAAAGGGAGTGT 55780 32 100.0 34 ................................ TGAGGACGAGAACAGCACTTTAAACGAACGTTTG 55846 32 100.0 35 ................................ TCTGAAGTGTAGTTGATCCGAATAAGTTCCCTAGA 55913 32 100.0 33 ................................ ACAAATGACATGGATCACTGCATGTATACAAAG 55978 32 100.0 35 ................................ ATCTATTTTTGTGTACTATTGCATATTGAATTATC 56045 32 100.0 35 ................................ CGGTTTGCCTGTATGATGCAAGCAAAAGGAGTAAG 56112 32 100.0 33 ................................ AAGCAAAGTACTTTACTTACCCAATTGAGGTTA 56177 32 100.0 35 ................................ ACAGAATTTATTGATAGCGTGAAAGAAGATTATGT 56244 32 100.0 34 ................................ TAGCAAATTCTACTTTTACAGATTTTACTACATA 56310 32 100.0 33 ................................ GTTTTGTGTAAAAATTTTGTTACCCCATGCGTC 56375 32 100.0 36 ................................ TGACCGGACAATCGATAATGCGGTAAGTCTGACAAA 56443 32 100.0 33 ................................ CCGAGCAACAATGTCGGGACAGATAGGTATAGC 56508 32 100.0 33 ................................ TGCGCTTTACGATAAGCCGTTTATAGAGATTAC 56573 32 100.0 34 ................................ ATGAAATTATTAAACTCCATTCTAACGCTATCCC 56639 32 100.0 34 ................................ CTGAAAATTACGATAATCTATATAACTGCGATTA 56705 32 100.0 34 ................................ AATATCTTCGCAGGGATGGGACGATTGCTGTTCC 56771 32 100.0 33 ................................ GCCATGAACTTACTTATAGCAGATGATGATATT 56836 32 100.0 34 ................................ TTTTTTGTCAGTTGCTGCATTTTCTCCGTCTGTC 56902 32 100.0 33 ................................ ACCGGTGAGGAGCCAATAACAAAAGCGAACAGC 56967 32 100.0 33 ................................ TATTTATTACAGAGGAGCATCCTGTTCCACACA 57032 32 100.0 34 ................................ TCATACACTTGTATCGCAAAGGTTTCAAGGCCAC 57098 32 100.0 36 ................................ TTCGCTGGTATCTGCTATTCTGTCTGTCAGCTCATC 57166 32 100.0 34 ................................ TACGACGGTTAAAGAAGCGAATGACGCTGATTAC 57232 32 100.0 34 ................................ CGATGATGGTTTTTATCACGATAAAGTTGCCCGT 57298 32 100.0 35 ................................ CCAGTGTTTCTGTAGACATAAATATATGGGATACA 57365 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 26 32 100.0 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : CATTTATTGCACAGACCGTAGTGAAACATGATGGTTTCAGGCATTCTGTCTCCACTTCGTTTCATGTTATCCGTGCGCTACTGGCGCACGGAACCTTTATCATAGATGAATTTCAATGAGCTAGATACGTAACAGTAATGCTTAAATTATTACCTTACGATAACGGTATAATTATATTACTGTAGGAGAGTGTAGTTCACTTAGGGGCTGCACCATGTAGCCCTTGGGGAATATAATTATCAGTAAACTGTAAAAATATAGAAAATATCAAAAGAAAATTGCTTATGGGAATGTTCTGATAGTATTTATGGTGTTTTAGGTGCGAATGTGAAGTGAACATAAATTCCCCGGGAGATTCGCACCATATAAATCTGTAAAATATTATATTGAGACGAGAAAAAAACGAGTTTGAGCTAAAACAATTGTAATTTCTAGGAAAATGCTATAGAATTTTAGGGGAAATGTATAATTTTCATGTGTAAAAATTGTGCAATTCTGCT # Right flank : TATGCACAGCTTAAGAAGGGATCACTGGTTGGCCACGTCACTCCCGTATACGGTAAATCACTAGTACCGTGCTAGTTTTATCTATCTATGAGATAATAACTCCAGAAAACTACAAGTTTTTTAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA //