Array 1 36716-35750 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JTLX01000003.1 Haemophilus haemolyticus strain HI2028 QR71_0003, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     36715	    32	 100.0	    35	................................	AAGGGTACTATTCTGCAAATCTTCAAACAATTTAG  	
     36648	    32	 100.0	    35	................................	ATCTGATATTTAGGACAAATATATCCAGTTATTAA  	
     36581	    32	 100.0	    34	................................	CGGTTATCATCTTTAATTAAGCCAGCGCCAACTA   	
     36515	    32	 100.0	    34	................................	TCAGAACGTACTACACAATATTTAAATAATATTG   	
     36449	    32	 100.0	    35	................................	GTTTTGGGGCAAGATTGACAGAGAATTAGGGAAAA  	
     36382	    32	 100.0	    34	................................	TTGCCTGCCCAGCGTGAATCTTTATGCGAACCAA   	
     36316	    32	 100.0	    34	................................	ATCTTTAACAGGGGCGGCTATCGCTGAAGATGTG   	
     36250	    32	 100.0	    34	................................	AGACTTATTAGCCGAGATGCAAGTGGTGGTATTG   	
     36184	    32	 100.0	    35	................................	AATATATTGAACGTTATGCCGCTATTGGGCAGTTG  	
     36117	    32	 100.0	    35	................................	AGCATTTTTAGAATTGGCTTGCATATCAGCTACGT  	
     36050	    32	  96.9	    35	..G.............................	AATATATTGAACGTTATGCCGCTATTGGGCAGTTG  	
     35983	    32	 100.0	    35	................................	CTAGTGGATATAGAGGTAACAACTCAATCATATCT  	
     35916	    32	 100.0	    34	................................	ATGCGATTTACCCCATACCACACAGACCCTAAAG   	
     35850	    32	  87.5	    37	......A...T..G.T................	AGCTCATACTTTCGCATACGTTGGTTGGCAAGCTCGA	
     35781	    32	  84.4	     0	......A...T..G.TA...............	|                                    	
==========	======	======	======	================================	=====================================	==================
        15	    32	  97.9	    35	GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC	                                     	       

# Left flank :   TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGATGATCCAAATGGTCAAGCGCGATTACGCCGCATAGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTCTTTGAATGCGATGTCACGCCTGACCAGTGGATCATGTTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGTTTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACTTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGGCGGTATGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATTCGCTGATTTTTCTTACTTTTTTATGTAGGGA
# Right flank :  GTTCACGCATTAAGCCAAGGGCAACTCTTACAACTCAGATGTTTTAGTCAGCGTGTGTTAAAATAGCTCCGTTTTTTATTATTTAAATGTTATTTTTTTGTTAAAAATATTTTACTTGAGTATAATGCTCAACATTATTCCTCACGGAAGAGTATCCGTAGAATAATGAGATTAATCGTAAATATAAGGAACAAAAATGGATTTCAATAGAATTATCACTCACATGAATGATCATCACCAAGATGATATGGCTGCCCTTTGTAAAAAATTTGGTGGCGTAAATGAAATTACGGATGTGACATTAGTTAATGTAGATTTTGGTGGTTTAGATTTTAAATATAATGGTGGTAAAACATTACGCGTGGAATTTCCACAACAAGCTGACGCAGGTTCAATTAAACAAGCGATCATTAATCTTTGTGTAGAAAATAAACCAGTTGCAAATTACGATCGTATCAAAGCTAAAATTGATGAATTTCGTCAAGAATTTAAAAGTTGTG

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.40,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [10-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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