Array 1 109602-107925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXDK010000006.1 Escherichia coli strain ME2L-18-14 NODE_6_length_206220_cov_25.210788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109601 29 100.0 32 ............................. GCGCGCGACTACTGCCCGACCCGCCGACAACA 109540 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 109479 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 109418 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 109356 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 109295 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 109234 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 109173 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 109112 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 109051 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 108990 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 108929 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 108868 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 108807 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 108746 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 108685 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 108624 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 108563 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 108502 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 108441 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 108380 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 108319 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 108258 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 108197 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 108136 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 108075 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 108014 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 107953 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125681-125103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXDK010000006.1 Escherichia coli strain ME2L-18-14 NODE_6_length_206220_cov_25.210788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125680 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 125619 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 125558 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 125497 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 125436 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 125375 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 125314 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 125253 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 125192 29 96.6 32 ............................A CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 125131 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //