Array 1 539054-540609 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDKO01000001.1 Escherichia coli strain G3 NODE_1_length_659576_cov_172.659, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 539054 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 539115 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 539176 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 539237 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 539298 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 539359 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 539420 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 539482 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 539543 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 539604 29 100.0 32 ............................. GCGACCACGCAGAGCGGCAACAACCTGACGTT 539665 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 539726 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 539787 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 539848 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 539909 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 539971 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 540032 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 540093 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 540154 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 540215 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 540276 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 540337 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 540398 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 540459 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 540520 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 540581 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATAAACCGGTGCGCCAGCTATAAAAAACTCACCATCAACAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCCACCAGCGATAGAGCCGCAAACAGAGCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCCCTGCGTCCTCTTTTGAATAATCGCGGCGTGTTCCCCGCGCCAGCGGGGATAAACCCAGGTCCTCGTCAGATACAGTAGTCACAACACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCACTGACAGTGAAGCTGAATTACAGGCAGAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGCTGTGGCTTTGTTTTTTGCTCTGATATATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTCCGTCAAAGAGGAAGCCAAAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 566159-567407 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDKO01000001.1 Escherichia coli strain G3 NODE_1_length_659576_cov_172.659, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 566159 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 566220 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 566281 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 566342 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 566403 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 566464 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 566525 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 566586 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 566647 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 566708 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 566769 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 566830 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 566891 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 566952 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 567013 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 567074 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 567135 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 567196 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 567257 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 567318 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 567379 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //