Array 1 93232-91402 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUE01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07278 WH-SGI-V-07278_contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 93231 28 100.0 32 ............................ ATGCGCGCCGCGGCTGAAATCATTGCGCGAGG 93171 28 100.0 32 ............................ TGGACGAACCGCAGCAGCGGTACGACGTTGTT 93111 28 100.0 32 ............................ TGGGCGAGTAAGTCCGGTAACGCCGGATTCGA 93051 28 100.0 32 ............................ GATTGGTCAGGCGCTGGCCAAGATCACGTTCC 92991 28 100.0 32 ............................ TGCGCCAGCCCGTGGTCAAGGGCCGCGTCGCC 92931 28 100.0 32 ............................ GTTGACGGACAAAAGACACCGAGGTCCTACGC 92871 28 100.0 33 ............................ AGCCAGCAGACCCAGCGAGCCGAGAACAACGCC 92810 28 100.0 32 ............................ ATCGGCGGGGATCGATCGGGTCTCTTTTCGTG 92750 28 100.0 33 ............................ GCGCAAGCGGGCAACATAGAACTTTCCACTGAT 92689 28 100.0 32 ............................ TGCGGGCGCCGGAACGCTGCCGCGCCAAGGAC 92629 28 100.0 32 ............................ AACCCGGCGGCGACCGTTGCTGCCTGGAATTC 92569 28 100.0 32 ............................ TGGCTCAGCGGGATGTTGTTTGCCCACCGCCG 92509 28 100.0 32 ............................ GTGTCGACAGGGTACCCTTCGAATACTGTTAC 92449 28 100.0 32 ............................ AGTCGACTTCTACGGTCTGCCACCCCTTTGAC 92389 28 100.0 32 ............................ CCCTCGGAGTTCGAGGTATCAACGGTGATGCG 92329 28 96.4 32 .....G...................... ATTGCGAAGGCACAGCGCGGCTTCTGCGATGT 92269 28 100.0 32 ............................ ATGCCGAAGAGGGTCTTCCGCTGAAAACCGAG 92209 28 100.0 32 ............................ TACAGACCAAGGTCCGTGCGCTGCTGGCCGAG 92149 28 100.0 32 ............................ TGCAGCGCGTGGACCAGGCGCTGGAGGGTACG 92089 28 100.0 32 ............................ ACGCAAAGCCTGTCGGATGCGGTCAAGTCCGG 92029 28 100.0 32 ............................ TTCTTGAGTACGGCGACCAGTACGGTTTTTGG 91969 28 100.0 32 ............................ GACGAGGAAACCCGAAACGCCGTCTCCAGCCT 91909 28 100.0 32 ............................ AGTACCACGTCGACGCTGTGCATCTGCATCGT 91849 28 100.0 32 ............................ AGCATCACCCAAGCCTCATCGAGCGACAGCAT 91789 28 100.0 32 ............................ TGAACGGAATGCCTTTGCTCGGCAGCGAGGCT 91729 28 100.0 32 ............................ AACGGCGCCGGGGTGGTGGTGGCCTATCCGAT 91669 28 100.0 32 ............................ TGGGCGAGCGCCTGGGTGTCCAACATCGACGG 91609 28 100.0 32 ............................ TTGGTGACGTCGCTGACCACCCTGATCGGCGC 91549 28 100.0 32 ............................ AGCACGCCGGTCGCGATGGTCGAGAAATCGAC 91489 28 100.0 32 ............................ TCCTACGCCTCTATCGTGAAGAACATCATCGT 91429 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGTCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37329-38435 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUE01000033.1 Pseudomonas aeruginosa strain WH-SGI-V-07278 WH-SGI-V-07278_contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37329 28 100.0 32 ............................ TTGCATCTCGCCGAGGCGTCGCGCCACCAGGC 37389 28 100.0 32 ............................ AAATAAAGAGTGCCTTTCTTGCTACTGATCAA 37449 28 100.0 32 ............................ ACAGTCGGTCATCTTTCACGCGACAAGTAATG 37509 28 100.0 32 ............................ TTCTGATAAGTCGCCCAGTGGTTCTAATAGCA 37569 28 100.0 32 ............................ AAGTACCTCGGCGGCAGCGATGTCGCCGGCAT 37629 28 100.0 32 ............................ ACCCGAACACATCGCCGACCCACGGCGTGCCC 37689 28 100.0 33 ............................ TGCATGAACTATGTGGAGAACGGGGCGTTCGAT 37750 28 100.0 32 ............................ ATCTTCGCCAACCTGTGCGACCTGGCACCGGA 37810 28 100.0 32 ............................ TGGCTGTATACCGTTTCGTCCACCGCTTCGAA 37870 28 100.0 32 ............................ TAGTTCTTCGCCAAGCCGGAAACCGAGGCCGT 37930 28 100.0 32 ............................ GACAAGGACCGTCGCGACAAGACCGAACCCGA 37990 28 100.0 32 ............................ CAGCACAAAGAGCAGGGCGGCAAGCCCGAAAA 38050 28 100.0 32 ............................ TCCACGGTCGGCTCGACGTACCAGTCGGGGCG 38110 28 100.0 32 ............................ TTACGGTGCGGCAATAACGAACCCCGCTCCGG 38170 28 100.0 32 ............................ TGGACGACTCGACGCATGACCAGGTCCAGGAC 38230 28 100.0 32 ............................ TACCACCACATGGCGGTCGGCATCGAAATGGC 38290 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38349 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 38408 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGAAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48310-46960 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUE01000033.1 Pseudomonas aeruginosa strain WH-SGI-V-07278 WH-SGI-V-07278_contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48309 28 100.0 32 ............................ ATATGCCGCTTCGAAATACGGACCTGGATAAC 48249 28 100.0 32 ............................ AGGACGAGCACCTGGTGCGCCAGGTCCTGGAC 48189 28 100.0 32 ............................ ACCACCCGTACCGCCACCATCACCGCCAGTAC 48129 28 100.0 32 ............................ TGCGATCACAAACGCGTTCTCCGGCTGGAGTT 48069 28 100.0 32 ............................ TGACCCCTGCCACCCGGCGAGGGGTTGAAGCG 48009 28 100.0 32 ............................ TTTTTGGTGCCACCCTGCCGACGTTGGTTTGC 47949 28 100.0 32 ............................ GGGTATCGTCGCCGCTAGCAGTTTTCGTTCTG 47889 28 100.0 32 ............................ CTCCAGCTCCATGACCCGGAACATCAGCCCGA 47829 28 100.0 32 ............................ AACAGAGGCCGATCTGCGGGCCATCTTCGCCA 47769 28 100.0 32 ............................ TCGATGCCGAGGCCCGTGGCTGCGATCTGTTC 47709 28 100.0 32 ............................ GACACGAAATATCGATTCGCAAGAAAGTGTCG 47649 28 100.0 32 ............................ TTGGCATTTCGCACCGGCTGAACACTCCAGCG 47589 28 100.0 32 ............................ AGGTTGCGACGGGCTCGCGCAGACCTGCGACG 47529 28 100.0 33 ............................ TGGATGGCCAGTACGCGGGTCCAGGCCCATCAA 47468 28 100.0 32 ............................ AATGAGCACGATCATCATGTCGGCCTGCTGGC 47408 28 100.0 32 ............................ AGCTCCGCCCAGACCTCTACGACGCGCCAGCA 47348 28 100.0 32 ............................ GGTCGAAGCGGTCGTTGCCGGCATCACCCCGA 47288 28 100.0 32 ............................ AGATTGCGCCAGTGCCAAACACGCCCATCTCA 47228 28 100.0 33 ............................ GCAGTGCTGCGCTGCTGTCGAGGAGATGCGCGA 47167 28 100.0 32 ............................ GAAGAGAAGTTGCTCGGTCCCAATGAGCAAGC 47107 28 100.0 32 ............................ TTCAAGGAAGCTCACCCCGCGCTGTTCGAGCA 47047 28 100.0 32 ............................ TTTCACACACCCGCCCGCACATAGGCGCGCAT 46987 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTAGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //