Array 1 271036-270709 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015106.1 Thermococcus radiotolerans strain EJ2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 271035 29 93.1 45 .....G..........A............ GCGTACCACTTCACCAAGCGCAGAACCCTGTTCCGCGGCACGCGA 270961 29 100.0 49 ............................. GGCCTGTACTCTATGAACAATACCTTGTCAATGTTTATCATATCGTCAC 270883 29 96.6 41 .......C..................... TCGATGTCCAGCCCGTTCTCCTCAATCACAGCCCTAAGAAT 270813 29 100.0 47 ............................. ATGGTCATGGACACTACAAAAGCACTTGTCGAAATGTCACAAGACCT 270737 29 89.7 0 .......................AAG... | ========== ====== ====== ====== ============================= ================================================= ================== 5 29 95.9 46 GTTTCAGTAGAACATAGTTGTGTGGAAAC # Left flank : CTCAGTTTTAATATATGAACTCTCCGGAAAATTCAAAGTTCACGTCATAGGCCACGAAAGAAACCCTCAGGAGAACATAATATAACCTGTAACACCAGCAAACCAAAATGCCTTGAGAGAAAACTCCAGAAAGAACAAAAGACTGTTCAAGGCCAAAATGATGATACAGGCCGTTTTGGAGGAACTAACGTACAGTTTGGGGGGATTCCGATTTGTTGTCCAAAAATGAGTGACAACGTGATCCCTCACTCAAAGCTTCTTTCATGATGAGAGACCATTACTCACACCACAGCCCCTTTTAACTACAACAAAACTATGTTCACTCTAAAAGACTAGTTGAGAGATGATGTAATGAAATTCTAGCCAAAAGAGATCCTAAAACGGAGTTCAACTCCAGCACGTATTTATAAAGAAAAGCCAGTAACACGGGTTTCATGAAGAAATGCTTAAATAGAGCAAGGAAAGAAGAGATATAACGAAACAGGACAAGAAACCGGAAA # Right flank : TGGCATAAACGGAAAGATTTTGCACGAAGAGCTTGTCAAAGGGTTCCACTTATAACATGGTTATACCGGGCGCATTGTCAAAACTTTCACCCCGTTTTCCCTCTTTGTTCGTACTTTCTCTAGCACTAACGCCCTTTCAGCATGATGCGCCCACATCTGGTATGCACCAGCATAGCGAAAATACGTGCTGGTGACACTCTCTCGGTGTGTACCCGCCCACTATGAGCACTGCATTCGGTGTCAACCCGTCAAGCCGCGTGAAACTTTCATGCGGCTTGATAGGGCTATATATTCATAGCCTCAAAATAGTGTGAGTACGCACGAGCACACAGAACACACAGAGCACAATCAGGCAAAAGTTTAAGTTAAATCGGCGAGAGTTTGCACTCTCCGCCGACCTCGCTCTCTTCGGGGGAGGAAGGTAAGAACACTCAAAACCTTCCCCGTTAGAAAGGTTTATGGGCATGGCCTTCAAACGCATAGGGTGGGAGGGGTCTATG # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTAGAACATAGTTGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 273628-272808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015106.1 Thermococcus radiotolerans strain EJ2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 273627 29 100.0 42 ............................. CTCCTCATCACATGTACCTCCTTTCTTGTATCTCCTCCCAAA 273556 29 100.0 41 ............................. AAACACCGCACGCCACAAGAAACCAGCCTCCTCAGAGCCCT 273486 29 100.0 47 ............................. TTGAATAACAACTTCGGCCAAATTATCCATTCTGACCAAACCCTTAA 273410 29 100.0 41 ............................. TCCGGGTTCTCCTCGGTATTCCGGCTCGGTATCGGGGCGTG 273340 29 100.0 43 ............................. TTGTTTCTTTCCTTTTATAAAACGAAAAGGAGGTTTGGAGATG 273268 29 100.0 44 ............................. TTGAGGAGATTCCTCGGGTACCGGTATTTGCCGGCGGGAATGAA 273195 29 100.0 40 ............................. TTCACGCCTACCGGTTACTTTCCGGTAGGTCTTCACTAAT 273126 29 100.0 42 ............................. TTTTCTAGGCTTGCGAGCGGGTAATTTTCGACTTGGAACACG 273055 29 93.1 45 .......................A....G TATCCTGCCAAATCTTCTCTGCTAAATGTTCATACATTTCCTTGA 272981 29 100.0 44 ............................. TACCGCCTGCATGTGAGGGGAACCTGGATCCTCGTCCTCCGCTT 272908 29 96.6 43 ...............A............. ATGAGCACTCTGACTGGGCTGTCCTTCCCGTAGTCAATTCCCG 272836 29 69.0 0 .......C......C.G....A.C.CTTA | ========== ====== ====== ====== ============================= =============================================== ================== 12 29 96.6 43 GTTTCCGTAGAACAGTATTGTGTGGAAAC # Left flank : AGGGTAGCACCGGTAAGAAAGGAAAAGGGAGAACGAGCCTGTCCGGGACAAATTAAGACCGTTCTTCCCTATTTCTCCTTAAGGAGTACTATTCAGGTGTTTCTTTCTTCTAAAAATGCTGAAAAGGGAGCTAGATTCTCAGGGATGAGTCCTTCGGAACCGAAGAGGGGGTGAGTTCCAAGAAAATTAAAGCCCGGAAAAACGCCCTTATGTGGAATAGAAAATCTCCCATCCCAGAAAAGCCTACCCGGATGGAGAACACAGGTTTTAGAGATTAAAAATCACGATAGCACGCTTAATCAGCCGTGATGTCACTGTTCGAGTTGGAATTTCCCCACAAAGGATTATAACAGGGCAGCTACGAAATCCCAGTGAAGAGCAATCTCCGTTATCCTGGCACCCCTTTATAAATGAGTGCCGGTGCTACCGATTTCCCAAGAAACAATTAAATAGAAGGAAGAAAATAATATTACACACCAAAAGAACTGAAAATCCTGAAA # Right flank : GTGGGAACCACAGAAGGCCTGATGGAAATGCTGGACTTACTCATCGGACTTATCGTCTGGTTGATTATCCTCTGGGTTATCTGGGCGATTTTTAGGGGCATGATGGAGGGGCTAGACCGGTTGATCAACGACCTCACGGGGAGATTAAGGTGAAAAGGCCCCTGTACATAACTAAACCAGGGATCCTCAGGTGCTTTAAGGGTACGCTCAGGTTCGAGGGGGAGGGTATTAAGAGGACTATTCCCGTAAAGGCCACGAGTGAGGTCTTTTGTCTTGCTCCTGTGACACTAACGAGCGGGGCATTGAGGCTGTTGTCCCGAGAAGGAATTCCCGTTCACTGCTACAGCACAAGGGGAAACTACCGGGGATCTTTCATTCCAGCCGACTCGAATCCTTGCGGTTCAACACTCATCGCCCAAGTTGATCACTATCTTGATGCGGAGAAGCGGTGCTACATAGCGACCCAGTTCATCGAGGGAATAAAGGCTTCGATGTTATCC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACAGTATTGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 282968-282115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015106.1 Thermococcus radiotolerans strain EJ2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================== ================== 282967 29 86.2 70 .......GG.T....G............. TAAAAGACGGTGTATCCTTCCTTCCTCCTCCTTATGTCTATTTGGTTGAGGTTCCAAGGCACTCCTCAAG 282868 29 100.0 44 ............................. TAGAAGTCTCCGGTGGTCGTGTGGATTACGACCATTTCTCCGAG 282795 29 96.6 55 ...............A............. GCCAGGCGCTCAGCCTCTAAAATGTTGCTTGCAGTTTCTACCTCGACCTTGTAGC 282711 29 100.0 40 ............................. CCCATGTAACTATTGATGAGTTTTGCCAAGTGCGCAACCT 282642 28 93.1 39 .....A........-.............. ACCCAAAGGTTGGACTTTATCCATCTCGGATACCACCCA G [282626] 282574 28 89.7 46 .......C......-......A....... TCGATTGCGATGTAGCCGCCGCTGAGGGTCCCGCTCTGAAAAGCTA G [282558] 282499 29 89.7 44 ...CT...........G............ TAAAGTTCCCCCCAGCCGTAACGCCAGCCTATTACTATGTCAGG 282426 29 89.7 40 .............GA.........A.... GCTTCATGGTATGAAACAAGGCCCTTCATACAGCCACCAG 282357 29 89.7 38 A......C......A.............. GGGTCTTTCTTGCCTTCTCTCCCCTTAAGCTCCTCCCA 282290 29 86.2 47 .....G........TG........A.... TCAACCGGGACGGCGCCCTTCAGGATTATCAACGCCGCAAACATGGG 282214 29 75.9 41 T.............CG.....A...G.GT TGGTTTGAATTCCTCGCCTGCTTAATCAAGTTAATCGAGAA 282144 29 72.4 0 .....T.C..T....G.....A.CCC... | C [282133] ========== ====== ====== ====== ============================= ====================================================================== ================== 12 29 89.1 46 GTTTCCGTAGAACAGTATTGTGTGGAAAC # Left flank : TCCTTATGGAGGCGGGCCTTCTCGGCCTGAAGGTCTACGGGGTGGACATACGGCCGGAGATGGTTGAGGGGGCCGAGATGAACCTCAGGCACTACGGGATAAGGGATTACGAGCTCAAACTTGGCGATGCGACAAAGCTGGAGGAGCTGTTTCCGGGGAAGAAGTTCGAGGCCGTGGCCACAGACCCGCCCTATGGAACCTCAGCGACGCTCGCGGGAAGAAAGAGGGACGAGCTGTACGAGAAGGTGCTGGAGAGCATCTACGGGGTTCTTGAGGAGGGCAGCAGGCTGGCGATAGCCTTTCCGGCGAGCTTTGATGGAGAGGCGGAGGCTGAAAAGGTGGGCTTCAAACTGGTAGGAAAGTACTATCAGCGCGTGCACAAGAGCCTGGAGAGGTACTTCTACGTGTTTGAGAAGCCTTAACACTCAAACAAGACTTTCAGAAAATTTAAATATTTCAGGCGTGTTACCTCCTTCTGGACAGCACCAAGAAGGCTGATT # Right flank : AAGACGGCACGTTCCGGAGAGATAACAGCTTCAATCGGCAGTTTCTGGGCACCCCCTGCATTGTGAACACTGATTACCTCGAAAGGGTTATAAACTTCATAACCCAAAAAGTTATACCGTTCAAATCTTCCGGTGACCCGGATGAGACTCAAACTGTCTTTTTATCCAAATGGGAACGGCAACTTCAGACCGAACAAACACGCTGTCCAGGGTTTCATCTACAACATGCTGAAGGGTACCAATTACGGTGATAGGCACGATGAGGCCAAGTTCAAGTTTTTCACGTTTTCAGACTTCTTCCTCGATCGCGACGGCAGGCCGACGTTCATAATATCCTCCCCGGACGAGGGTTTCATCAACGCCCTCCACTCTAACCTGAAGGATAGAGTCAGGGTCTATCTTGGCACCGAGGAGCTCGTGATTGCAGAGGTAAAGAAGTTCAAGTTGCCCCTAAGAAAGCGCTTCCAAACGGGCTCTCCCATTGTCATCTACAGGAACTC # Questionable array : NO Score: 4.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.28, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACAGTATTGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [23-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 465077-465975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015106.1 Thermococcus radiotolerans strain EJ2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 465077 30 100.0 37 .............................. CAGGCTCCGAAGCCTGACCGAGGCGCCAGGTCACCAC 465144 30 100.0 37 .............................. AAGAAGATCAACGTGGTCTACGATCCGTCGTTCTACA 465211 30 100.0 37 .............................. CTATCGTATCGTGTCTAACAGGGGCGTATTCGTGCGC 465278 30 100.0 36 .............................. CCGAACTTTGCCCCTCCTCGGGAGCCTCACACGGCC 465344 30 100.0 38 .............................. CGGTTAAATGGGCGAAAGCGGATAAAAGGGACGTTGGT 465412 30 100.0 38 .............................. TCGTCGTTTACCCGGCGATAAAGTGAGAGGTGGGTTAA 465480 30 100.0 36 .............................. TACGTGCCAAAGCTCGAAAAGCCCAAGTGGCCAAGG 465546 30 100.0 34 .............................. ATATTTCCATGCCTTTATTTGGGCGTCCATACTC 465610 30 96.7 36 ..............T............... GGACAGGAGGTGCTCAGGGAAACGGCGTTCGAAATC 465676 30 96.7 37 ..............T............... AGATCGAACCGGAGGAGATTCTGAATCTCATCGAGGA 465743 30 96.7 37 ..............T............... CGAAGAACATCCCCTCGTCAAAGTCTCCCTGCTGTCC 465810 30 96.7 38 ..............T............... TGGGATGTGAATGAGCCTGTTTGATGAGACCCTGACGA 465878 30 90.0 38 ..............TC.A............ AATTTCGACTTTTTCATGGCTATGGCTGAGGACCCGGT 465946 30 86.7 0 ...............C..A......A.G.. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 97.4 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GGAGTACAACCCGAGGATAAGGTACTGATTCTTTGGTATCATGCTAGGTTTATTCGTTTTTTGATTTCCTGCCCCATTAGGGCGATTTGTCCCGAAAGGAGACTTATTTGGACTTGGGAACTCGATTTCCATCGTTATATAAATGTAACCTTCCGTTTTGGATCATGTGGAGAACATAACGAATTTTATTCGGAGAACGTAACAGGAGTTCTAGGAGCGCGATATACGCTGTCATTGTATAGAAACCGATTCTTTTTGAGATTTCACGGATGAGAGGGGAACTAAAGCGATTTTAAGAAACCTCAATTGCCGGGAACTCGTGTGTACGCATATTGACATTTTCTAATGGCTGGTTATAATGGGTGTTCTCCCGATATCCACCTCCAAATTGGCCCCTTTAACAGTGTTCTCGTGGGTTCTAAAAGGGGGCTTCGTCAAAAAGGTTTTATATCGGAGCATGCATTAGAGTCTACTGAGGAAACGGGGCAAAAATGTGCCCT # Right flank : GGCAAAAATCAAAGGGAACTCACTCCCACTCCCCCATATCGAAGGGATACTTCGTCTTCAGCACCGCTATCGTCATCAGCCCTGCGCCGATGTACTCCATTATGATGTCCCTGATCTTGTTGTTTATCGGTTCGTCCACGTGGGGCAGTATCGTGAGCGAGGCAGCGAGCTCTATAAACTCCCACAGAATGCCAATGACGAGCAGGGCACCCATCGAGTACTTGACGATTGTCTTCGCGGTCCAGCCCTTGTTGTTGATTTTGGAGTATTCCAGGGCCGTCTTGGCGAATATCGTCCACATCATCAGGCCGCCGAGGGAATGGCCGATTATGTCACCGTTCTCGTAGACGTTGTAGAGGTCAACGTTGAGTATCGGGACGTTGAGGAGCGTCACGTGGAAGAGGAAGAACACCGCGACTATTATCATGACGCCGTTGTCGTATATCGAGCTGATCCACGGCCATACCTTTTTGCTCGGATTGGGATAGAACTTTCTGACT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : GTTGCAATAAGACTTTAGGAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //