Array 1 25065-22841 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJKS01000005.1 Thermodesulfovibrio sp. Kuro-1 kuro1_contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 25064 36 100.0 34 .................................... TTGTTTGACATTGTCAATTGTCTGACAATGTCAA 24994 36 100.0 32 .................................... AATAAAATAAAAAATATTATAATATCACCCCC 24926 36 100.0 35 .................................... GCTCCTCAATCTCCTCTTGTAGATTGAGGAGATTA 24855 36 100.0 31 .................................... TTTTATCTTTTTTAATTTTTGTTACCATTTT 24788 36 100.0 36 .................................... CTCCAGTTCCATCAAAATTAATCTTTGCTTTTATTT 24716 36 100.0 34 .................................... ATTGTTTTCATTTATTAGCTTAATTTGATTGTCA 24646 36 100.0 35 .................................... TTTTACTTCAGCAATGCATTTTTCAATCATATCAG 24575 36 100.0 35 .................................... TGTGTTTTTTTGCCCCTTCCATTCTCACTGTAAGG 24504 36 100.0 34 .................................... TTTGATATAAAGACCTAATTCTTGGCATACTTTT 24434 36 100.0 34 .................................... TGAGGAGATTTTCAAGAATAGACACAGGCAATTT 24364 36 100.0 36 .................................... TAAGCTCAAAATTTCATTTATCATTTACCCTCCAAT 24292 36 100.0 35 .................................... AAGCATCCTTTTTCAATTTTAAACTCCACTTTTCT 24221 36 100.0 34 .................................... AAGCAGTTGTTACTATTTCAAACAAAAGCCCCTC 24151 36 100.0 34 .................................... AGTTAACTGATTAATTAATTGGCTTGCTTCTTGA 24081 36 100.0 34 .................................... ACACATTTTGTTACTTTTAATGGATAAGGGTCTT 24011 36 100.0 33 .................................... GTCGTATATGGTGAGGAGTATTTGTTCCTCACC 23942 36 100.0 36 .................................... CTCATAAATCTTAAAGGATACATCAAAGCATCCTTT 23870 36 100.0 33 .................................... CTGCAACAGTCTGTTTTTTCTGTTTAACTATGT 23801 36 100.0 34 .................................... AAAAATTCCAGAGATTGCCTTCTTTCATAACTGA 23731 36 100.0 37 .................................... CAAAATCCAAAGCATAAGACCTTGAGTAAGTTTCTCT 23658 36 100.0 36 .................................... TTCAATCTCTGTCACGTTATCACAAAAAAAATAAAA 23586 36 100.0 33 .................................... AATGCAGGAATTACCCCACCCTGCAAAATAAAA 23517 36 100.0 34 .................................... TTGTTACAATTGAACACCTATTCTCATGATTATC 23447 36 100.0 36 .................................... TTTGATATATTGAAGTATGTTTTACAAATTCAATTC 23375 36 100.0 37 .................................... ACATGAAATTAGCCTTCTCATACTACAATGTCTCTTA 23302 36 100.0 34 .................................... CTGGACTTTTCTCATTTTAACACCACATTTTACA 23232 36 100.0 33 .................................... AATCATATTGATTACTTCTTCTATGAACCTTTT 23163 36 100.0 36 .................................... AGAAAAACCCTCTCTATCACTTGTAAAAAAAGCAGG 23091 36 100.0 35 .................................... AGTTGCATAATTTGATAGTTCTAAATCTTGTCCTA 23020 36 100.0 34 .................................... TTGTTTGACATGGGAAAGTTAGGTGGTGGTTTTT 22950 36 100.0 38 .................................... ATGATGAGCCGTCAACATCTATTTTCAACATTCCATCC 22876 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ====================================== ================== 32 36 99.9 35 GTAGGAAACAAGACCTCATTTAAAAGGGATTGCGAC # Left flank : ATTCCATATGTAAAGGCTGGTGAAATCCTGCATGTTGGCAAAGGAACAAGTTTTGGATTGGGCAAGTACGAGATTGTTGAGTTCTCAACTTGACAAACATACAATGGTTATGATTTGATTTAATAAATTGCTCTTTGACAAGGCTGGTTTGTTTTAATCTCTAATGATTAAAACATACGAATATTCACTCCGAGCTTGGCGCTTGGAAGAATATTATTTTGCATTATTTTAATGGAGAGCTAACACTGTTTATGAATAGTTATTCCGAGCCTGCGTAAACAGGCGATGAATCTCAATCTCTATTTTTGAAGAAAAGAGATTATTTTCAACCAACTATTGGATATATTCACGCAAAATATTGCAAATATTTGTTTTGCTGGGAATATAAAATTAAGCATTATCAATGTTTTGAACCTCATGCGGAGGTGGGAAAATGCGAAAAAATTTGCACACCCATTTTTATAACATGTTGAAAAATAAACAAAAAAATATGATAGGCA # Right flank : TTTCTAAAAAGGAGGTTTTAATGAACGTTGACAACAGCAATCAAGAGCCTTTATTAGGTTTTTTATCTCTTTATGAGACAACTTCGCATGATGGATATATTGGAAGCTTATTGATAACTGATCCTCATGGTATACCACAAGAATTTAGATGCACTCATCCTATTAAACCTACGGCAATCCAAAAGGATATTATACGGAGAGAGTTTAGAAACCTATGTTGGTGTCAATTTATGCGGATTTTCTTTGCTCAAATCTCTTCAAACTGTTCCATCAATTTTAATTGTTGGCAAGAATTACCTACTTGACACACGAAAAGTAACTTCTTATCCCGTTGTATATGTTAGAAAAGCTGGTGAAACAATAGATTTAAGTTCATCGGAAAGTTCAAAAATTGGTAAAAGGGAAAGAATTGAATGCCCTACCAGTAAATTTCAACCGATAATAGTTATCTCTCATCCAGATTTTAGTGATGATTTAGCAGTGGCAAAACAGATGCTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAAACAAGACCTCATTTAAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 362031-361391 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJKS01000002.1 Thermodesulfovibrio sp. Kuro-1 kuro1_contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 362030 37 100.0 39 ..................................... TATAAAAAAACTTAAAGAGATGCATCATAATGTAAACAT 361954 37 100.0 39 ..................................... ACAATAAAAATAAAAAAAGAGAAAATAAAAAATTTAACT 361878 37 100.0 40 ..................................... GAGAAGGATTGATCACAGCATACGAAGAATTAAGAAAAGA 361801 37 100.0 37 ..................................... TCAAAAGAATCGAAATGCTAAGAGAATTAATTAGAAA 361727 37 100.0 39 ..................................... GCAGAAAATGAGTTAGAAACAAAACAAATCATTGATTTA 361651 37 100.0 38 ..................................... AGATAGAATGCAAAAAAGAAGGCTTTGAGTTTATGGAA 361576 37 100.0 38 ..................................... ATGTTGCAGGCGAGTTTACCTACTCTTACTTGATGTAT 361501 37 100.0 37 ..................................... AATTTAGAGCAATTAGATGAATTAAGAGAAATCGTTA 361427 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 100.0 38 GTCGCAATCCCTTTTAAATGAGGTCTTGTTTTCCAAC # Left flank : TATATCTGAATCAATTATATAGTTAAACCCTTCTTGCAGCAAAGTTTCTACTTTTTTTACAGCCATTAATGCTGATTTGTTTTGTCTGTAACCATAAGAACAATTTAAAAAATCTTTTTCAAACTCTGGCTGAATGACAAGTAACACAGCTTCTTGAACGATTCTATCTTTTACTGTCGGGATTTTTAATAGTCTTTTTCTTCCATCGTGCTTATTTATTTCTTTTGCAATTAGAGGAGAAGGTTCATATAGTCCTTGTCTTAGAAGACTTCTTAATAAAACAAGGTTATTGTGTAAATTTGTCTCAAAGTCTTTTATTGATACATGGTCCACACCAGGACAACCACGATTGGCTTTGACTCTTTGCCATGCAAGATAAAAATTATCTTCGCTACATATTTTTTGCCAAAAATAACCCTCTGTATCCATGATTATGGATGATTTTTAAATTGGTTACTTGAATTTTAAACAAAATGAGAAATTTTGTTCAACAGCATTAT # Right flank : GGTAGCCTTTGTAACTTACTGATTTTTATGGCTTTTTAGTGCCTTTTTCCGTAACCTCTCTCAGAGAGGGCTAAAATGTAAGTGAATACTTTCAAATTTTTACCACTTTTTAAAGTCTAAAACTTGTCAAAGATCGTTGATACTGTAGCGAAAGCTAATTTAGCCTCTAACCTCTCACGAGATTGTAATTTTATACCACAATATATCCCTCTTCGTCAAGAGTAGAGAATAAGTATCTTGCATTTTGTTTCGGATTTTTATCTGGCTGAATGTAAAATGCTTTAAAAACTCTTGTAATGAAATTAATAATTTATTAAAATTAATGGAAATATTTTTTAAACATTTTTTATGATTCCTGTTTAATTATTAAATTAAGTAAGTAGTATTTAGAGAGGAATTTCATGATTACAGAGATTGAGGTTGTCGCAAAAGGAGGACTTCTTTACAATATTGGTAGGGTTGCTTTGAGAGCAGAAGGTAATTTTAATGAAGAAAATTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATCCCTTTTAAATGAGGTCTTGTTTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 91-1478 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJKS01000006.1 Thermodesulfovibrio sp. Kuro-1 kuro1_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 91 37 100.0 37 ..................................... ATTTTATCTTTTTTAATTTTTGTTACCATTTTCCCTC 165 37 100.0 40 ..................................... TTATTCTTCTTCTGAAAAAGAAAAAGGTAAGAGAGACTTA 242 37 100.0 38 ..................................... GATTTTTTTTCTGAATTTCCTCGTATTCGCCCCAAAGT 317 37 100.0 38 ..................................... CAATTCATTTTCTGCTCCATAACCGCTTACATAAAATT 392 37 100.0 38 ..................................... TCTAAGCACACTTTCTCTTACTTCTAAAGTTTTTTTTG 467 37 100.0 37 ..................................... TTTTTCAAACATCTGATAGCTTTTAATCATTTTCTCC 541 37 100.0 39 ..................................... ATATTACTATTGCTAACATAAAACGCATACCTTTTCTAT 617 37 100.0 38 ..................................... TTATCTTTATCTTTATCAAACCATCCATTTTTACATAT 692 37 100.0 37 ..................................... ACATCAATTTTATTTGGAATCAGATCTATTGCTTTTT 766 37 100.0 37 ..................................... AAACTTCAACTATAATGACATAGAAAGATTTCCATGT 840 37 100.0 41 ..................................... TGATTAAAAATAGGGCTATCAAACATCCCTTCTCTGCTAAA 918 37 100.0 37 ..................................... TTTGATCAAGCAACTCTTTTACTTTGTTGACTTCTAC 992 37 100.0 38 ..................................... TTTTCAAATACTTGAAAATTTTGGTAATCATTTTCCCC 1067 37 100.0 37 ..................................... TCTAAACCTCCTTAATTTTTGATTTTCTTAAATCCGT 1141 37 100.0 38 ..................................... TTGTTTTAAATGATGATGAATCTTTTGTTCTTTTTATT 1216 37 100.0 38 ..................................... GGAATTACACTGTAACTGCTCCAACTCCTTAACTGTTC 1291 37 100.0 40 ..................................... TCTCTCCCTGCCTTTGAGAGCCTCTTGTGGCTGTAAAGCC 1368 37 97.3 37 ....................................G AGATCTCTGAGCCATTTCGGCTCAAAGGGTTCTTTAT 1442 37 78.4 0 .........T.G..................CATTT.T | ========== ====== ====== ====== ===================================== ========================================= ================== 19 37 98.7 38 GTTGGAAAACAAGACCTCATTTAAAAGGGATTGCGAC # Left flank : AGTATTCACTTACATTTTAGCCCTCTCTGAGAGAGGTTACGGAAAAAGGCACTAAAAAGCCATAAAAATCAGTAAGTTACAAAGGCTACCG # Right flank : TACCTTCAGAATCATGAGAAAGAGTCTCCTTCCAAGTTAAAACAAGAAATTTGAGACTTCAGGACTTAATTTTTGGAATGATATTAGGAATATTTTAATTTCTCCCTAAAAAGTGTTATATTTTTATATGTTTTTTGATGTTGAACTCCTTTTTTAAAAATACTTAGGATTATAGAAAAATCAAGATGAAAAAGCATATTCTTCTATGCGTAATTGGTATGACTCCACAGATAATAACAGAAACAATTTATGCACTTGCTAAGAAAAAAATTAATATTGAAGAACTTCATGTAATTACTACCTTAGATGGTAAAAGAAAATTAACTGAAACCCTTATCAATAAAGGCATTCTCTCACAACTTATATATGAGTATAACTTACCATCTATAGATTTTTCTGAGAAATCAATTTACTTAATTAAAAATTTTAAAAATAAGCCCCTTTCAGATATAAGGACACCCCTTGATAATGAATCCGCTGGAGAAATAATCTGCAAAGTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAAAACAAGACCTCATTTAAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 44-666 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJKS01000007.1 Thermodesulfovibrio sp. Kuro-1 kuro1_contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 44 29 100.0 38 ............................. TCCTCAAAACACTGCATAACAGTTACCCCAATACTTTT 111 29 100.0 37 ............................. TGAATATACTTCAATTCCACATCCACCTCCAAATCCA 177 29 100.0 38 ............................. ACCGGGAGTATGCTGCAGTATCTTTACTATTTCTTCCT 244 29 100.0 37 ............................. TCTTGGAAAGATCTGAGGTTTAATTAAACCTCAGAGA 310 29 100.0 37 ............................. TGAGAAAAAGATTAAAAAATCTTGATTAAAACTCTAC 376 29 100.0 36 ............................. TCTGATTTGATTATTTCTTTGTTAGGACATAACAAT 441 29 96.6 36 ...G......................... AAACGTTTGCTTAATTTGAGTGAATACATAATAAGA 506 29 100.0 38 ............................. ACAGCAGGTATACAATCATACCAATTAGTTCCATCTGG 573 29 100.0 36 ............................. CTGTGTTAACTTTTTTGAATTCCACGTTCTTTAAAT 638 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 99.7 37 GTTTCATCTGAACCATGTGGGATATAAAG # Left flank : TAAAGCTTCAAGTGCTTGCATATACCTTCTCACTGGTTCAGTTG # Right flank : GGGGGTGAGCAATTTTACAGTATTTGTAAACTCATTATAATTTCTTATCTGAGACATGTTAGAGCCTTCTTTGACTGCGATTTAGACGAAGAATCTCCTCCTCTGTTAGGGGACTCTTGCAAGTCAGTTTCATCAAGGAAAGCCCTCGGGGTGACCCTTGCAATTAAGATTCCTTGATATTATAAGCCTCCTTCGGAACAACAACTATCAATTGCGAACCATTTTGTTTTATTTAAAAATTTTCTTGAAAGTGTCTTTAAGTTCATTTACTGCCTTTTCAAAGACGTTTCCCTCTGTGTTTTCAGAACCCTGACCCTGAGTTTTCTGCTCATCTATTTTTTTCAAATTTTCGTTGTTAAAATTCGCCTCTATGGGTTTATTTTTCGGCTGTTTTTCTTCCATTTTCTGTAATGCTTCTTCTGCTTCTTTGAAATCTATCAGAGCAGGTGCAATTAATTCACGATTGTACTCAAGTTTTTTAGCATCATGGTCTGGATTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCATGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 18286-22324 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJKS01000009.1 Thermodesulfovibrio sp. Kuro-1 kuro1_contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 18286 29 100.0 36 ............................. ATCCATTGCTATTATGTTAGCAAAAATTGATTACTA 18351 29 100.0 36 ............................. GTTGTTATCAATAATATAATATATGAGGTATTAGAT 18416 29 100.0 36 ............................. CATTATCACCTTTTTTTGATTGCTGATAGAGATTGT 18481 29 100.0 36 ............................. GCCACCTGCTCTTTATCATTTTGCTTCGCATAATAA 18546 29 100.0 36 ............................. GAGTAACCCCATGCCCAGTAAGATTGATCAGGGTAT 18611 29 100.0 38 ............................. GTAAGATCGGTCAGGGTATTTGATATAACAATTTTTGT 18678 29 100.0 37 ............................. AGATGACGATGATATTCAAAAAAGAAATATATGTCAT 18744 29 100.0 37 ............................. ACTTAATATTGCAGAAATTAGACCACCCATTTAATCA 18810 29 100.0 37 ............................. TATTGTTATTATTGTTATATATATTATACATATATAT 18876 29 100.0 39 ............................. GTATGATTTTTCTAAACTCCATCCTTTTCCTGAATTTAT 18944 29 100.0 36 ............................. TGTTTAAAATCAAAAATATGATAAGGGTTGCTTTTT 19009 29 100.0 37 ............................. TCAAGCCTTTTTTGTTGAATACTCTGCAATTGAGATA 19075 29 100.0 37 ............................. ATATTGTATTTACTTATATTATACATATATATATAGA 19141 29 100.0 38 ............................. GTTCAGAATCAGAAGACTCATTTTCACTTCTTGCAAAC 19208 29 100.0 35 ............................. ACTCAATGCAATGGTCGGAGGCACTCTTAAGCAGA 19272 29 100.0 36 ............................. TTTTAAAAATTATTGCAAGAAAAGTCATACATACAG 19337 29 100.0 36 ............................. TTTTAACGGTTGGCATAAATTTTTCAACTCCTTTTT 19402 29 100.0 36 ............................. TTATATCCACACTCAGCAGATTTGAATGTCCACTGA 19467 29 100.0 37 ............................. TAAGTCTTATATCTATAAGTTTCAAAGTTTCTGGAAG 19533 29 100.0 37 ............................. ATCTTCTTTACTCTCATTTTTCTTTTACACTCAACAC 19599 29 100.0 37 ............................. TCTTCTGCATCAAAGCTCCAACCAGAGCTCTTATCCA 19665 29 100.0 40 ............................. TCTAGTAAAGTTTTAATTTGCTTTTTTGTTAACTTCATTC 19734 29 100.0 41 ............................. TTCAAGAACAGCCTTAATGATATATCCCAACCTTTCTGTCA 19804 29 100.0 35 ............................. TATTTTGTCTATTCAGAGTGATTTTGCTGAACCTT 19868 29 100.0 37 ............................. AAAGCTTTGATATATCTTTTTTCTCAGGAACATCAAA 19934 29 100.0 36 ............................. GGGGCTCCTGCGTTTGATACTAAATTTGATGTTCCT 19999 29 100.0 37 ............................. GATGTAACTGCTGAAGTTGATTCTGCACCTCAACCTT 20065 29 100.0 37 ............................. TTTTCTAAGTCTGGTGTAATGAATTTTTGTCAGTATG 20131 29 100.0 37 ............................. GATGTGAGCTATTGGGCATGGGGTTGGTCAGGACTTC 20197 29 100.0 37 ............................. TGTATTCTTTAAATTTGTCTATCTTATAGAGTTGATA 20263 29 100.0 37 ............................. TTAGTTGCATAAGTATAAAAGAAGTGAATGTTAATTC 20329 29 100.0 35 ............................. AATGCCACCGAAGCCTTGATTTGGGTTCGTGCTCA 20393 29 100.0 37 ............................. AGAGGAATAGCCACCTTTTTATATGGAGTCCCAACAA 20459 29 100.0 35 ............................. ATTGTGATCCAAACAACACTACCAACTGATACGAA 20523 29 100.0 37 ............................. CTTTAATATACGGAATTATATTTTTATACCATTCTTT 20589 29 100.0 36 ............................. CCTGAATACCAAGAAGAGTATTAAAAGTTTTATTTA 20654 29 100.0 36 ............................. AACCATAGCACCTTCATCCTTCATAACAAACTCTGC 20719 29 100.0 36 ............................. ACTAACAAAACTGAACATACAACCAACTGATTTGGA 20784 29 100.0 36 ............................. GTAAAGCTCAAAACAAATGTCATCAGAACAAGTATT 20849 29 100.0 37 ............................. TTGTTAGTAGTCTTTGATGTTTATAATCTTAACCCAG 20915 29 100.0 35 ............................. TTTGGAATGGTGTATGTGTTTGAGAAGAGAGACGG 20979 29 100.0 38 ............................. CTTCAAGTGCTTGCATATACCTTCTCACTGGTTCAGAT 21046 29 100.0 37 ............................. GCTGAAGCCAATGCAATTGTGGAGAAGCGAGATTGGA 21112 29 96.6 37 ................T............ GATGTAACAGCAGATTTAAGTTCAAGTCCACAGCCTC 21178 29 100.0 36 ............................. TGCAAACTAAAGTTCATATTAGAGTTTTCTTTCACA 21243 29 100.0 38 ............................. GAAGCAAAATATGGTTCCAACACCTTTGAAATTTTTAG 21310 29 100.0 36 ............................. ACTGCATTGTCAGTGTTCAAAGGTGTTGCTAAGATA 21375 29 100.0 36 ............................. GAATTACAGAAATATAAAGAAAGAGGTATTTGGGGA 21440 29 100.0 37 ............................. TCATACTTGCCCCCATTATCCACTATTTATAAACTCT 21506 29 100.0 36 ............................. CCAAACAACACAGCATTAGTAAAACTCACAATGTCC 21571 29 100.0 35 ............................. GAGTTAAGGATGAGAGATATATTTGCTCTTGTGAG 21635 29 100.0 36 ............................. TGTTGTTGAATCAGGAAATGCAAGAGCATTGGGAAG 21700 29 100.0 36 ............................. TTTTTTTCAAAAAAAATCTTGAAAAATCAATGACTT 21765 29 100.0 37 ............................. TTTTTATGAAATTCTTGAGATTTTTATTAATAAGATT 21831 29 100.0 36 ............................. CCTTTTTGGATCTTGTATAAACTGTTATAAGACAAA 21896 29 100.0 37 ............................. CTTGTTTTAGGGTTTGTGTCATCTGCATTTGCTGAGG 21962 29 100.0 37 ............................. GAACTTATTTATAGCCCAAATGCACCAGTTATTGAAG 22028 29 100.0 38 ............................. ATTTATAGAGTAGATATCAAGGCATGCTTTTACAGCAT 22095 29 100.0 36 ............................. TGCTTTTCACATGGTATTTGAATTGAAATTGTAGAA 22160 29 100.0 39 ............................. AAACAGATTGTGCATTGGATTTCTTACATACCACATGTA 22228 29 100.0 39 ............................. GAGAAAAAGGATGTCTCAAGGCTCTTAGATAGATGGCTT 22296 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 62 29 99.9 37 GTTTCATCTGAACCATGTGGGATATAAAG # Left flank : AGCTTGTAAAATGTAAGCTTGAACTTGAAAAGGTCATAGACAAAGAAGTAGATTCAGTATACTTCTACAGTCTTGAAAACAGGCTAAATTACAGAAAAACCGTATTAGGCATCGAAAAAGAAATAACGGGTAATATTTTATAGATAAATTGTGAGTAAATACTTTGAACTAAGCGAAAATCTCTATTTATTTTTATTAATTCTCACATTTAGAATGAGCACATTGCTTATGCCGTCATTTCTTTCTGTCATTCTGAACGAAGTGAGGAATCTCTTTCTATTATTAAGTCTGCATCAAACCTGTTTTAAGTCGGAGGTTAGGCGAGAGATAATATTATCAATAATTTGAAAAGTGATTTTGGACATTTTTTAAAAATTGATTAAAGGTCTGATGCAAATAACTTGTTTTTTGAGGGGGTTCTCAGATGCGATAATTTTTTTGTAAAATTTAGAAATATAAAGAATTTTGGGAGCAATTCATTGTTCATTGACAAGCTGGGG # Right flank : TCCTCAAAACACTGCATAACAGTTACCCCAATACTTTTGTTTCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCATGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //